Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003634

Physical Location & Seq

Genomic Coordinates Forward (+)

57431108 .. 57431494

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G030720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAGTCTTCCCAAGTTGTTAGTGCTGAGAAGTGGAGTGGCAATGGTGAGTCTGGGTGGACAATGTACATTGCCTCCTCCATTCATGGTGAAAGACATGGTGTTTATTCCAGTACCCATGATGCAACCAAAGAAAATAAGGTGAGTGTTGAGCACAAAGACGACGGTGACGAGAGTGATGATTCCATGGCTTCGGATGCCTCCTCTGGCCCAAGTCACACTGAGAGAAGTCGCGGCGCAACTCGTCTCAGGCATGCAGAAAAGGAAGGGAATGTCAAGAAACACAGCACAAAGAAGAAGAAGAATGAAATTACAATGATCAAAGCGGAGAAAGCTGAGCAGGAAATATTGCTGCACAAGGCAGATAGTGCTGCCAGTCACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.02

Weight (kDa)

6.3

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08150
fragaria_vesca	FvH4_4g28720 FvH4_5g13090 FvH4_5g13090
prunus_persica	Prupe.1G298800_v2.0.a1 Prupe.1G298800_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1
pyrus_communis	pycom13g04770
rosa_chinensis	RchiOBHm_Chr4g0436841 RchiOBHm_Chr7g0184051
rosa_laevigata	RLG00000005006 RLG00000006492
rosa_multiflora	Rmu_co8463551.1_g000001 Rmu_sc0004712.1_g000012 Rmu_sc0007533.1_g000014
rosa_roxburghii	Rroxscaffold_3G00269950 Rroxscaffold_5G00377910
rosa_rugosa	Rorug04G0296600 Rorug06G0461700 Rorug06G0461700
rosa_samantha	Rh4AG351000 Rh4BG360000 Rh4CG374300 Rh4DG354000 Rh7AG063400 Rh7BG063500 Rh7CG064400 Rh7DG063900
rosa_wichuraiana	Rw0G022810 Rw4G030720 Rw7G005230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	234
AciI	CCGC	2 cut(s)	234, 326
AfaI	GTAC	2 cut(s)	68, 115
AluBI	AGCT	1 cut(s)	335
AluI	AGCT	1 cut(s)	335
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	251
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	2 cut(s)	352, 371
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	4 cut(s)	59, 101, 154, 179
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	339, 358
BclI	TGATCA	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	251
BisI	GCNGC	3 cut(s)	235, 353, 372
BlpI	GCTNAGC	1 cut(s)	336
BlsI	GCNGC	3 cut(s)	236, 354, 373
BmgT120I	GGNCC	1 cut(s)	209
BmsI	GCATC	2 cut(s)	112, 187
Bpu1102I	GCTNAGC	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bse1I	ACTGG	2 cut(s)	111, 375
Bse3DI	GCAATG	2 cut(s)	49, 69
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	202
BseMI	GCAATG	2 cut(s)	49, 69
BseMII	CTCAG	4 cut(s)	18, 213, 262, 327
BseNI	ACTGG	2 cut(s)	111, 375
BseRI	GAGGAG	2 cut(s)	67, 193
BseXI	GCAGC	2 cut(s)	339, 358
BsgI	GTGCAG	1 cut(s)	338
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	251
BsmBI	CGTCTC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	318
Bsp1720I	GCTNAGC	1 cut(s)	336
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	2 cut(s)	234, 326
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	4 cut(s)	19, 214, 261, 328
BspFNI	CGCG	1 cut(s)	234
BsrDI	GCAATG	2 cut(s)	49, 69
BsrGI	TGTACA	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	111, 375
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstAUI	TGTACA	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	4 cut(s)	27, 222, 248, 336
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 332, 368
BstNSI	RCATGY	1 cut(s)	257
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	339, 358
BsuRI	GGCC	1 cut(s)	210
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	255
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	67, 114
CviAII	CATG	5 cut(s)	86, 98, 119, 187, 254
CviJI	RGCY	3 cut(s)	191, 210, 335
CviKI_1	RGCY	3 cut(s)	191, 210, 335
CviQI	GTAC	2 cut(s)	67, 114
DdeI	CTNAG	4 cut(s)	27, 222, 248, 336
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	5 cut(s)	89, 101, 122, 190, 257
FaiI	YATR	5 cut(s)	87, 99, 120, 188, 255
FatI	CATG	5 cut(s)	85, 97, 118, 186, 253
FbaI	TGATCA	1 cut(s)	318
Fnu4HI	GCNGC	3 cut(s)	235, 353, 372
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	3 cut(s)	235, 353, 372
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	3 cut(s)	235, 353, 372
HaeIII	GGCC	1 cut(s)	210
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	5 cut(s)	89, 101, 122, 190, 257
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HinfI	GANTC	3 cut(s)	5, 50, 182
HphI	GGTGA	4 cut(s)	59, 101, 154, 179
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	1 cut(s)	60
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	3 cut(s)	125, 257, 355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 332, 368
HpyF3I	CTNAG	4 cut(s)	27, 222, 248, 336
Hsp92II	CATG	5 cut(s)	89, 101, 122, 190, 257
HspAI	GCGC	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	1 cut(s)	318
LpnPI	CCDG	5 cut(s)	39, 124, 192, 235, 326
Lsp1109I	GCAGC	2 cut(s)	339, 358
LweI	GCATC	2 cut(s)	112, 187
MaeIII	GTNAC	3 cut(s)	167, 215, 377
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	3 cut(s)	307, 310, 313
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	1 cut(s)	309
MlyI	GAGTC	2 cut(s)	14, 59
MnlI	CCTC	4 cut(s)	85, 88, 211, 214
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	3 cut(s)	197, 332, 368
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	5 cut(s)	89, 101, 122, 190, 257
NmuCI	GTSAC	3 cut(s)	167, 215, 377
NspI	RCATGY	1 cut(s)	257
PaeI	GCATGC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	3 cut(s)	236, 354, 373
PleI	GAGTC	2 cut(s)	13, 58
PpsI	GAGTC	2 cut(s)	13, 58
PspPI	GGNCC	1 cut(s)	209
RsaI	GTAC	2 cut(s)	68, 115
RsaNI	GTAC	2 cut(s)	67, 114
SatI	GCNGC	3 cut(s)	235, 353, 372
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	2 cut(s)	14, 59
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	2 cut(s)	144, 337
SfaNI	GCATC	2 cut(s)	112, 187
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	1 cut(s)	309
SsiI	CCGC	2 cut(s)	234, 326
SspI	AATATT	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	167
TasI	AATT	1 cut(s)	309
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	1 cut(s)	237
TfiI	GAWTC	1 cut(s)	182
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	3 cut(s)	167, 215, 377
TseI	GCWGC	2 cut(s)	352, 371
Tsp45I	GTSAC	3 cut(s)	167, 215, 377
TspDTI	ATGAA	2 cut(s)	74, 321
TspRI	CASTG	1 cut(s)	226
XceI	RCATGY	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.