Prupe.5G211600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0003634
Physical Location & Seq
Reverse (-)
16785713 .. 16791161
5449 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G211600.5

Sequence Viewer

Length: 366 bp
ATGGAGTCTTCCAAAGTCTTTGGAGGTGCAGAAGAATGTCACAGCAGTGAATCAGGGTGGACAATGTACATTGGCTCCTGCACAGATGGTGAAAATGAAGATGGCACTGGCATGACCCATGAAAACAGTAAAGATGATGGAGAAAATGATGGTCATAAGGATGACCACAGTGATGATTCTATGGTTTCTGATGCTTCCTCTGGCCCAAGCCATCACCACCATGGAGGAGAGAGATCCAGAGGTCATGGCTTGGCTGTTGACAAAAAGGCCAAGAAGAAACCAAAGGAGAAGCAGCAACCTAGAGCTGGAAGGAGAAAGGAAGAGAAGAAAGACAAGGTTTTATTGACTCATGCCAAGAAACGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.28

Weight (kDa)

6.55

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 228
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 1 cut(s) 305
AleI CACNNNNGTG 1 cut(s) 45
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
AlwI GGATC 1 cut(s) 228
AoxI GGCC 2 cut(s) 202, 267
ApeKI GCWGC 1 cut(s) 292
AspS9I GGNCC 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 101, 206
BbvI GCAGC 1 cut(s) 304
BccI CCATC 5 cut(s) 80, 95, 131, 143, 219
BfaI CTAG 1 cut(s) 300
BisI GCNGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 294
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 76
BmsI GCATC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 220
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse1I ACTGG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 304
BsgI GTGCAG 2 cut(s) 48, 64
BshFI GGCC 2 cut(s) 204, 269
BslI CCNNNNNNNGG 1 cut(s) 305
BsnI GGCC 2 cut(s) 204, 269
Bsp1407I TGTACA 1 cut(s) 66
Bsp143I GATC 1 cut(s) 233
Bsp19I CCATGG 1 cut(s) 220
BspANI GGCC 2 cut(s) 204, 269
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 1 cut(s) 228
BsrGI TGTACA 1 cut(s) 66
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 1 cut(s) 233
BssT1I CCWWGG 1 cut(s) 220
Bst4CI ACNGT 2 cut(s) 128, 170
Bst6I CTCTTC 1 cut(s) 315
BstAUI TGTACA 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 1 cut(s) 236
BstMBI GATC 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BsuRI GGCC 2 cut(s) 204, 269
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 3 cut(s) 52, 105, 175
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 67
CviAII CATG 5 cut(s) 112, 119, 221, 245, 350
CviJI RGCY 7 cut(s) 75, 204, 210, 249, 254, 269, 305
CviKI_1 RGCY 7 cut(s) 75, 204, 210, 249, 254, 269, 305
CviQI GTAC 1 cut(s) 67
DpnI GATC 1 cut(s) 235
DpnII GATC 1 cut(s) 233
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 5 cut(s) 115, 122, 224, 248, 353
FaiI YATR 7 cut(s) 113, 120, 156, 182, 222, 246, 351
FatI CATG 5 cut(s) 111, 118, 220, 244, 349
Fnu4HI GCNGC 1 cut(s) 293
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 293
FspBI CTAG 1 cut(s) 300
GluI GCNGC 1 cut(s) 293
HaeIII GGCC 2 cut(s) 204, 269
Hin1II CATG 5 cut(s) 115, 122, 224, 248, 353
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 4 cut(s) 5, 50, 176, 346
HphI GGTGA 2 cut(s) 101, 206
Hpy166II GTNNAC 2 cut(s) 60, 259
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 1 cut(s) 237
Hpy8I GTNNAC 2 cut(s) 60, 259
HpyAV CCTTC 1 cut(s) 303
HpyCH4III ACNGT 2 cut(s) 128, 170
HpyCH4V TGCA 2 cut(s) 29, 81
Hsp92II CATG 5 cut(s) 115, 122, 224, 248, 353
Kzo9I GATC 1 cut(s) 233
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 6 cut(s) 39, 91, 93, 186, 250, 291
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 38
MalI GATC 1 cut(s) 235
MboI GATC 1 cut(s) 233
MboII GAAGA 5 cut(s) 44, 110, 286, 332, 337
MflI RGATCY 1 cut(s) 233
MlyI GAGTC 2 cut(s) 14, 340
MnlI CCTC 4 cut(s) 17, 208, 218, 233
MslI CAYNNNNRTG 5 cut(s) 45, 110, 159, 171, 219
NcoI CCATGG 1 cut(s) 220
NdeII GATC 1 cut(s) 233
NlaIII CATG 5 cut(s) 115, 122, 224, 248, 353
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 38
OliI CACNNNNGTG 1 cut(s) 45
PfeI GAWTC 2 cut(s) 50, 176
PkrI GCNGC 1 cut(s) 294
PleI GAGTC 2 cut(s) 13, 340
PpsI GAGTC 2 cut(s) 13, 340
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 203
PsuI RGATCY 1 cut(s) 233
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 5 cut(s) 45, 110, 159, 171, 219
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 1 cut(s) 233
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 2 cut(s) 14, 340
SetI ASST 5 cut(s) 28, 244, 301, 307, 339
SfaNI GCATC 1 cut(s) 181
SmiMI CAYNNNNRTG 5 cut(s) 45, 110, 159, 171, 219
SspMI CTAG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 128, 170
TatI WGTACW 1 cut(s) 66
TfiI GAWTC 2 cut(s) 50, 176
TscAI CASTG 3 cut(s) 52, 112, 175
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 111, 135
TspRI CASTG 3 cut(s) 52, 112, 175
XcmI CCANNNNNNNNNTGG 1 cut(s) 218
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.