Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003634

Physical Location & Seq

Genomic Coordinates Forward (+)

29250796 .. 29251600

Gene Structure 805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAGTCTTCCCAAGTTGTTGGTGCTGAGGAGTGGACTGGCAGTGGTGAGTCTGGGTGGACAATATACATTGCCTCCTCCATTCATGGGGAAAGAGATGGTGTTTATTCCAGTAGTCATAATACAACCAAAGGAAGGAAGGTGATTTTTGAGCACGAAGACGACGGTGAAGAGAGTGATGATTCCATGGCTTCAGATGCCTCTTCTGGCCCAAGTCACCCTGAGAGAAGTCGCGGCGCAACTCGCCTCAGGCATGCAGAAAAGGAAGGGGCCAAGAAACACAGCACAGAGAAGAAGAGCAAGAACAAGCATGAAACTGCAATGATCAAAGGAGAGAAAGCTGTGGAGGATATATTGCAGCACAAGGCAGATAGTGCTGCCAGTCACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.13

Weight (kDa)

5.83

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08150
fragaria_vesca	FvH4_4g28720 FvH4_5g13090 FvH4_5g13090
prunus_persica	Prupe.1G298800_v2.0.a1 Prupe.1G298800_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1
pyrus_communis	pycom13g04770
rosa_chinensis	RchiOBHm_Chr4g0436841 RchiOBHm_Chr7g0184051
rosa_laevigata	RLG00000005006 RLG00000006492
rosa_multiflora	Rmu_co8463551.1_g000001 Rmu_sc0004712.1_g000012 Rmu_sc0007533.1_g000014
rosa_roxburghii	Rroxscaffold_3G00269950 Rroxscaffold_5G00377910
rosa_rugosa	Rorug04G0296600 Rorug06G0461700 Rorug06G0461700
rosa_samantha	Rh4AG351000 Rh4BG360000 Rh4CG374300 Rh4DG354000 Rh7AG063400 Rh7BG063500 Rh7CG064400 Rh7DG063900
rosa_wichuraiana	Rw0G022810 Rw4G030720 Rw7G005230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	234
AciI	CCGC	1 cut(s)	234
AcuI	CTGAAG	1 cut(s)	177
AfiI	CCNNNNNNNGG	2 cut(s)	87, 135
AluBI	AGCT	1 cut(s)	341
AluI	AGCT	1 cut(s)	341
Alw21I	GWGCWC	1 cut(s)	156
AoxI	GGCC	2 cut(s)	208, 270
ApeKI	GCWGC	2 cut(s)	358, 377
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	209, 270
AsuHPI	GGTGA	4 cut(s)	59, 154, 179, 209
AxyI	CCTNAGG	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	156
BbvCI	CCTCAGC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	364, 370
BccI	CCATC	1 cut(s)	92
BclI	TGATCA	1 cut(s)	324
BisI	GCNGC	3 cut(s)	235, 359, 378
BlsI	GCNGC	3 cut(s)	236, 360, 379
BmgT120I	GGNCC	2 cut(s)	209, 270
BmiI	GGNNCC	1 cut(s)	271
BmsI	GCATC	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 135
Bse1I	ACTGG	3 cut(s)	43, 111, 381
Bse21I	CCTNAGG	1 cut(s)	248
Bse3DI	GCAATG	2 cut(s)	69, 327
BseDI	CCNNGG	1 cut(s)	186
BseLI	CCNNNNNNNGG	2 cut(s)	87, 135
BseMI	GCAATG	2 cut(s)	69, 327
BseMII	CTCAG	3 cut(s)	18, 213, 262
BseNI	ACTGG	3 cut(s)	43, 111, 381
BseRI	GAGGAG	2 cut(s)	44, 67
BseXI	GCAGC	2 cut(s)	364, 370
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	2 cut(s)	210, 272
BsiHKAI	GWGCWC	1 cut(s)	156
BslI	CCNNNNNNNGG	2 cut(s)	87, 135
BsnI	GGCC	2 cut(s)	210, 272
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	324
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	2 cut(s)	210, 272
BspCNI	CTCAG	3 cut(s)	19, 214, 261
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	271
BspQI	GCTCTTC	1 cut(s)	290
BsrDI	GCAATG	2 cut(s)	69, 327
BsrI	ACTGG	3 cut(s)	43, 111, 381
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	3 cut(s)	165, 208, 290
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	3 cut(s)	27, 222, 248
BstDSI	CCRYGG	1 cut(s)	186
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	324
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 243, 374
BstNSI	RCATGY	1 cut(s)	257
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	364, 370
BstV2I	GAAGAC	1 cut(s)	165
BstXI	CCANNNNNNTGG	1 cut(s)	20
Bsu36I	CCTNAGG	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	210, 272
BtgI	CCRYGG	1 cut(s)	186
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	255
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	209, 270
CviAII	CATG	4 cut(s)	86, 187, 254, 311
CviJI	RGCY	4 cut(s)	191, 210, 272, 341
CviKI_1	RGCY	4 cut(s)	191, 210, 272, 341
DdeI	CTNAG	3 cut(s)	27, 222, 248
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
Eam1104I	CTCTTC	3 cut(s)	165, 208, 290
EarI	CTCTTC	3 cut(s)	165, 208, 290
Eco130I	CCWWGG	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	177
Eco81I	CCTNAGG	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	4 cut(s)	89, 190, 257, 314
FaiI	YATR	7 cut(s)	67, 87, 120, 188, 255, 312, 353
FatI	CATG	4 cut(s)	85, 186, 253, 310
FbaI	TGATCA	1 cut(s)	324
Fnu4HI	GCNGC	3 cut(s)	235, 359, 378
Fsp4HI	GCNGC	3 cut(s)	235, 359, 378
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	3 cut(s)	235, 359, 378
HaeIII	GGCC	2 cut(s)	210, 272
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	4 cut(s)	89, 190, 257, 314
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HinfI	GANTC	3 cut(s)	5, 50, 182
HphI	GGTGA	4 cut(s)	59, 154, 179, 209
Hpy166II	GTNNAC	2 cut(s)	36, 60
Hpy188I	TCNGA	1 cut(s)	196
Hpy8I	GTNNAC	2 cut(s)	36, 60
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	3 cut(s)	129, 133, 260
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	3 cut(s)	257, 320, 358
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 243, 374
HpyF3I	CTNAG	3 cut(s)	27, 222, 248
Hsp92II	CATG	4 cut(s)	89, 190, 257, 314
HspAI	GCGC	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	324
LguI	GCTCTTC	1 cut(s)	290
LpnPI	CCDG	6 cut(s)	24, 39, 124, 192, 234, 235
Lsp1109I	GCAGC	2 cut(s)	364, 370
LweI	GCATC	1 cut(s)	187
MaeIII	GTNAC	2 cut(s)	215, 383
MalI	GATC	1 cut(s)	326
MboI	GATC	1 cut(s)	324
MboII	GAAGA	5 cut(s)	170, 182, 195, 304, 307
MhlI	GDGCHC	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	14, 59
MnlI	CCTC	6 cut(s)	22, 85, 88, 211, 257, 340
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	3 cut(s)	197, 243, 374
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	324
NlaIII	CATG	4 cut(s)	89, 190, 257, 314
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	2 cut(s)	215, 383
NspI	RCATGY	1 cut(s)	257
PaeI	GCATGC	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	3 cut(s)	236, 360, 379
PleI	GAGTC	2 cut(s)	13, 58
PpsI	GAGTC	2 cut(s)	13, 58
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	2 cut(s)	209, 270
SapI	GCTCTTC	1 cut(s)	290
SatI	GCNGC	3 cut(s)	235, 359, 378
Sau3AI	GATC	1 cut(s)	324
Sau96I	GGNCC	2 cut(s)	209, 270
SchI	GAGTC	2 cut(s)	14, 59
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	2 cut(s)	144, 343
SfaNI	GCATC	1 cut(s)	187
SphI	GCATGC	1 cut(s)	257
SsiI	CCGC	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	167
TauI	GCSGC	1 cut(s)	237
TfiI	GAWTC	1 cut(s)	182
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	2 cut(s)	215, 383
TseI	GCWGC	2 cut(s)	358, 377
Tsp45I	GTSAC	2 cut(s)	215, 383
TspDTI	ATGAA	2 cut(s)	74, 327
TspRI	CASTG	1 cut(s)	49
XceI	RCATGY	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.