AT5G09570

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004697
Physical Location & Seq
Forward (+)
2970498 .. 2972222
1725 bp
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UTR
Exon/CDS
Intron
AT5G09570.1

Sequence Viewer

Length: 420 bp
ATGCCTCGAGGAAGCTCCGGAGGAAGATCTAGCTACCGTCCTTCTCGCCCTGCAGCTGCACGAAGCCCGCCTCCTCAATCTGTGAACCGTGCTCCTCCTCCAGCAACAGCTCAGCCTAGTAGCGGTGGTTCTTTCTTAGGCAATATTGGTGCATCCATAACTGAAGGTCTGGCTTGGGGTACTGGAACTGCATTTGGACACAGGGTTGTGGATTCTGTGATGGGTCCACGAACCTTTAAGCACGAAACCGTTGTTTCTCAGGTTCCATCTGCTGCAAATACCATGACTGCTTGTGACATTCACTCCAAGGCTTTCCAAGATTGCGTCAACCATTTTGGAAGCGACATCAGTAAGTGCCAGTTCTACATGGACATGCTGAGTGAATGCAAGAAGAATTCTGGTTCCGTGGTGGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHCH

Protein Analysis

139

Amino Acids

14.46

Weight (kDa)

9.34

Isoelectric Point (pI)

66.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHCH PF06747 98 - 132 2.1e-08 CHCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 6
AccIII TCCGGA 1 cut(s) 17
AciI CCGC 2 cut(s) 68, 123
AcsI RAATTY 1 cut(s) 394
AcuI CTGAAG 1 cut(s) 183
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 122
AluBI AGCT 4 cut(s) 15, 33, 56, 110
AluI AGCT 4 cut(s) 15, 33, 56, 110
Alw21I GWGCWC 1 cut(s) 94
Ama87I CYCGRG 1 cut(s) 6
Aor13HI TCCGGA 1 cut(s) 17
ApeKI GCWGC 4 cut(s) 53, 56, 272, 413
ApoI RAATTY 1 cut(s) 394
AspS9I GGNCC 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 6
AvaII GGWCC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 4 cut(s) 43, 65, 259, 400
BccI CCATC 2 cut(s) 214, 274
BfaI CTAG 2 cut(s) 30, 117
BfmI CTRYAG 1 cut(s) 51
BglII AGATCT 1 cut(s) 26
BisI GCNGC 4 cut(s) 54, 57, 273, 414
BlpI GCTNAGC 1 cut(s) 111
BlsI GCNGC 4 cut(s) 55, 58, 274, 415
Bme18I GGWCC 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 3 cut(s) 225, 264, 403
BmsI GCATC 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 84
Bpu1102I GCTNAGC 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 306, 405
BsaWI WCCGGW 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse1I ACTGG 2 cut(s) 187, 358
BseAI TCCGGA 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 306, 405
BseGI GGATG 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMII CTCAG 3 cut(s) 125, 272, 368
BseNI ACTGG 2 cut(s) 187, 358
BseRI GAGGAG 3 cut(s) 63, 84, 87
BseXI GCAGC 4 cut(s) 43, 65, 259, 400
BsgI GTGCAG 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 6
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 122
BsmI GAATGC 1 cut(s) 389
BsoBI CYCGRG 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 94
Bsp13I TCCGGA 1 cut(s) 17
Bsp143I GATC 1 cut(s) 26
Bsp1720I GCTNAGC 1 cut(s) 111
BspACI CCGC 2 cut(s) 68, 123
BspCNI CTCAG 3 cut(s) 124, 271, 369
BspEI TCCGGA 1 cut(s) 17
BspLI GGNNCC 3 cut(s) 225, 264, 403
BspMAI CTGCAG 1 cut(s) 55
BsrI ACTGG 2 cut(s) 187, 358
BssECI CCNNGG 2 cut(s) 306, 405
BssMI GATC 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 306
Bst4CI ACNGT 3 cut(s) 38, 89, 250
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 4 cut(s) 111, 136, 258, 377
BstDSI CCRYGG 1 cut(s) 405
BstF5I GGATG 1 cut(s) 152
BstKTI GATC 1 cut(s) 29
BstMBI GATC 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 376
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 4 cut(s) 43, 65, 259, 400
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 405
BtsCI GGATG 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 224
CseI GACGC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 180
CviAII CATG 3 cut(s) 283, 367, 373
CviJI RGCY 9 cut(s) 15, 33, 56, 66, 110, 115, 173, 311, 413
CviKI_1 RGCY 9 cut(s) 15, 33, 56, 66, 110, 115, 173, 311, 413
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 4 cut(s) 111, 136, 258, 377
DpnI GATC 1 cut(s) 28
DpnII GATC 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 6
EcoRI GAATTC 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 286, 370, 376
FaiI YATR 4 cut(s) 158, 284, 368, 374
FatI CATG 3 cut(s) 282, 366, 372
FauI CCCGC 1 cut(s) 75
Fnu4HI GCNGC 4 cut(s) 54, 57, 273, 414
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 4 cut(s) 54, 57, 273, 414
FspBI CTAG 2 cut(s) 30, 117
GluI GCNGC 4 cut(s) 54, 57, 273, 414
GsuI CTGGAG 1 cut(s) 84
HapII CCGG 1 cut(s) 18
HgaI GACGC 1 cut(s) 313
Hin1II CATG 3 cut(s) 286, 370, 376
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 1 cut(s) 212
HpaII CCGG 1 cut(s) 18
Hpy166II GTNNAC 3 cut(s) 85, 227, 328
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 3 cut(s) 85, 227, 328
HpyAV CCTTC 2 cut(s) 51, 158
HpyCH4III ACNGT 3 cut(s) 38, 89, 250
HpyCH4V TGCA 6 cut(s) 53, 59, 152, 191, 275, 387
HpyF3I CTNAG 4 cut(s) 111, 136, 258, 377
Hsp92II CATG 3 cut(s) 286, 370, 376
Kpn2I TCCGGA 1 cut(s) 17
Kzo9I GATC 1 cut(s) 26
LmnI GCTCC 2 cut(s) 20, 97
LpnPI CCDG 9 cut(s) 31, 63, 114, 155, 168, 187, 245, 371, 384
Lsp1109I GCAGC 4 cut(s) 43, 65, 259, 400
LweI GCATC 1 cut(s) 161
MaeI CTAG 2 cut(s) 30, 117
MaeIII GTNAC 1 cut(s) 293
MalI GATC 1 cut(s) 28
MboI GATC 1 cut(s) 26
MboII GAAGA 2 cut(s) 36, 403
MflI RGATCY 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 1 cut(s) 394
MnlI CCTC 6 cut(s) 14, 15, 81, 84, 105, 108
MroI TCCGGA 1 cut(s) 17
MseI TTAA 2 cut(s) 237, 418
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 1 cut(s) 18
Mva1269I GAATGC 1 cut(s) 389
NdeII GATC 1 cut(s) 26
NlaIII CATG 3 cut(s) 286, 370, 376
NlaIV GGNNCC 3 cut(s) 225, 264, 403
NmuCI GTSAC 1 cut(s) 293
NspI RCATGY 1 cut(s) 376
PaeR7I CTCGAG 1 cut(s) 6
PctI GAATGC 1 cut(s) 389
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 4 cut(s) 55, 58, 274, 415
PspN4I GGNNCC 3 cut(s) 225, 264, 403
PspPI GGNCC 1 cut(s) 224
PspXI VCTCGAGB 1 cut(s) 6
PsrI GAACNNNNNNTAC 2 cut(s) 112, 144
PstI CTGCAG 1 cut(s) 55
PsuI RGATCY 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
RseI CAYNNNNRTG 1 cut(s) 371
SaqAI TTAA 2 cut(s) 237, 418
SatI GCNGC 4 cut(s) 54, 57, 273, 414
Sau3AI GATC 1 cut(s) 26
Sau96I GGNCC 1 cut(s) 224
SduI GDGCHC 1 cut(s) 94
SetI ASST 7 cut(s) 17, 35, 58, 112, 169, 236, 264
SfaNI GCATC 1 cut(s) 161
SfcI CTRYAG 1 cut(s) 51
Sfr274I CTCGAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 224
SlaI CTCGAG 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 1 cut(s) 394
SsiI CCGC 2 cut(s) 68, 123
SspI AATATT 1 cut(s) 145
SspMI CTAG 2 cut(s) 30, 117
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 3 cut(s) 38, 89, 250
TaqI TCGA 1 cut(s) 7
TasI AATT 1 cut(s) 394
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 2 cut(s) 237, 418
Tru9I TTAA 2 cut(s) 237, 418
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 4 cut(s) 53, 56, 272, 413
Tsp45I GTSAC 1 cut(s) 293
TspGWI ACGGA 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 1 cut(s) 394
XceI RCATGY 1 cut(s) 376
XhoI CTCGAG 1 cut(s) 6
XspI CTAG 2 cut(s) 30, 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.