Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004697

Physical Location & Seq

Genomic Coordinates Reverse (-)

25345767 .. 25348038

Gene Structure 2272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG165600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCTCGCCGCAGCTCAGGAGGTCGATCTGCTCGTCCGGCTCCTCGTCGTGCACCAGCCCCTGCACCAGTTCGCCAGGCTTCTGCTCCAGCTCCTGCTCAGAGTGGAAGCGGTGGGGGTATTGGATCAGTCATTGCTGAGGGAATGGCTTTCGGCGGTGGAAGCGCCATTGCACACAGAGCTGTGGATGGTTTGTTTGGTCCTCGCACTATTCAACATGAAACTGTAGTCTCTGCTGCTCCAACACCTACTTCTAAGAGTATGGGTGGCTCTGATGCTTGCAGTGTTCACTCCAAGGCATTCCAAGATGCATGCTGCAAAGCACCATCTGGGATAGTATATCTTAAAGTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHCH

Protein Analysis

118

Amino Acids

11.67

Weight (kDa)

10.58

Isoelectric Point (pI)

69.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09570 AT5G64400 AT5G64400 AT5G64400
fragaria_vesca	FvH4_2g11490 FvH4_2g11500 FvH4_2g11500
malus_domestica	MD05G1048900.v1.1
prunus_persica	Prupe.8G071500_v2.0.a1 Prupe.8G071500_v2.0.a1
pyrus_communis	pycom05g04050 pycom10g04270
rosa_chinensis	RchiOBHm_Chr6g0270231 RchiOBHm_Chr6g0270481
rosa_laevigata	RLG00000013789
rosa_multiflora	Rmu_sc0002138.1_g000005 Rmu_sc0033942.1_g000002
rosa_roxburghii	Rroxscaffold_7G00197910 Rroxscaffold_7G00198030
rosa_rugosa	Rorug06G0053800 Rorug06G0053900 Rorug06G0054800
rosa_samantha	Rh6AG172400 Rh6AG173700 Rh6BG176700 Rh6BG177400 Rh6CG172400 Rh6CG173200 Rh6DG163700 Rh6DG165600
rosa_wichuraiana	Rw6G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	10, 111, 156
AclWI	GGATC	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	75
AjuI	GAANNNNNNNTTGG	2 cut(s)	235, 267
AluBI	AGCT	3 cut(s)	15, 92, 182
AluI	AGCT	3 cut(s)	15, 92, 182
Alw21I	GWGCWC	1 cut(s)	55
Alw26I	GTCTC	1 cut(s)	235
Alw44I	GTGCAC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	133
AlwNI	CAGNNNCTG	2 cut(s)	62, 95
ApaLI	GTGCAC	1 cut(s)	51
ApeKI	GCWGC	3 cut(s)	12, 236, 315
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	55
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	3 cut(s)	24, 223, 302
BccI	CCATC	2 cut(s)	182, 334
BciT130I	CCWGG	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	235
BfmI	CTRYAG	1 cut(s)	225
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	4 cut(s)	10, 13, 237, 316
BlsI	GCNGC	4 cut(s)	11, 14, 238, 317
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	2 cut(s)	265, 298
BpmI	CTGGAG	1 cut(s)	72
Bpu10I	CCTNAGC	2 cut(s)	16, 138
BsaJI	CCNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	68
Bse3DI	GCAATG	2 cut(s)	132, 168
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	193
BseMI	GCAATG	2 cut(s)	132, 168
BseMII	CTCAG	3 cut(s)	30, 113, 129
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	33
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	3 cut(s)	24, 223, 302
BsgI	GTGCAG	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	235
BsmI	GAATGC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	2 cut(s)	26, 125
BspACI	CCGC	3 cut(s)	10, 111, 156
BspCNI	CTCAG	3 cut(s)	29, 112, 130
BspLI	GGNNCC	1 cut(s)	42
BspPI	GGATC	1 cut(s)	133
BsrDI	GCAATG	2 cut(s)	132, 168
BsrI	ACTGG	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	2 cut(s)	26, 125
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	226
BstC8I	GCNNGC	3 cut(s)	7, 280, 313
BstDEI	CTNAG	4 cut(s)	16, 99, 138, 255
BstF5I	GGATG	1 cut(s)	193
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	2 cut(s)	29, 128
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	2 cut(s)	26, 125
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 162, 179
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	225
BstSLI	GKGCMC	1 cut(s)	55
BstV1I	GCAGC	3 cut(s)	24, 223, 302
BtsCI	GGATG	1 cut(s)	193
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	3 cut(s)	7, 280, 313
CaiI	CAGNNNCTG	2 cut(s)	62, 95
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	200
CviAII	CATG	2 cut(s)	218, 312
CviJI	RGCY	9 cut(s)	5, 15, 41, 59, 80, 92, 149, 182, 270
CviKI_1	RGCY	9 cut(s)	5, 15, 41, 59, 80, 92, 149, 182, 270
DdeI	CTNAG	4 cut(s)	16, 99, 138, 255
DpnI	GATC	2 cut(s)	28, 127
DpnII	GATC	2 cut(s)	26, 125
Eco130I	CCWWGG	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	294
EcoT22I	ATGCAT	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	2 cut(s)	221, 315
FaiI	YATR	4 cut(s)	219, 263, 313, 340
FatI	CATG	2 cut(s)	217, 311
Fnu4HI	GCNGC	4 cut(s)	10, 13, 237, 316
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	4 cut(s)	10, 13, 237, 316
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	4 cut(s)	10, 13, 237, 316
GsuI	CTGGAG	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	168
HapII	CCGG	1 cut(s)	38
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	2 cut(s)	221, 315
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HpaII	CCGG	1 cut(s)	38
Hpy166II	GTNNAC	2 cut(s)	53, 289
Hpy188I	TCNGA	2 cut(s)	102, 274
Hpy188III	TCNNGA	1 cut(s)	18
Hpy8I	GTNNAC	2 cut(s)	53, 289
Hpy99I	CGWCG	1 cut(s)	51
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	6 cut(s)	53, 65, 173, 282, 311, 318
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 162, 179
HpyF3I	CTNAG	4 cut(s)	16, 99, 138, 255
Hsp92II	CATG	2 cut(s)	221, 315
HspAI	GCGC	1 cut(s)	165
Kzo9I	GATC	2 cut(s)	26, 125
LmnI	GCTCC	4 cut(s)	46, 91, 97, 244
Lsp1109I	GCAGC	3 cut(s)	24, 223, 302
LweI	GCATC	2 cut(s)	265, 298
MalI	GATC	2 cut(s)	28, 127
MboI	GATC	2 cut(s)	26, 125
MhlI	GDGCHC	1 cut(s)	55
MmeI	TCCRAC	1 cut(s)	266
MnlI	CCTC	4 cut(s)	14, 54, 133, 213
Mph1103I	ATGCAT	1 cut(s)	313
MseI	TTAA	1 cut(s)	345
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	77
Mva1269I	GAATGC	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	38, 162, 179
NdeII	GATC	2 cut(s)	26, 125
NlaIII	CATG	2 cut(s)	221, 315
NlaIV	GGNNCC	1 cut(s)	42
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	1 cut(s)	315
PaeI	GCATGC	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PctI	GAATGC	1 cut(s)	299
PkrI	GCNGC	4 cut(s)	11, 14, 238, 317
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	200
PstNI	CAGNNNCTG	2 cut(s)	62, 95
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	4 cut(s)	10, 13, 237, 316
Sau3AI	GATC	2 cut(s)	26, 125
Sau96I	GGNCC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	5 cut(s)	17, 25, 94, 184, 250
SfaNI	GCATC	2 cut(s)	265, 298
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	200
SphI	GCATGC	1 cut(s)	315
SsiI	CCGC	3 cut(s)	10, 111, 156
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	226
TaqI	TCGA	1 cut(s)	25
TauI	GCSGC	1 cut(s)	12
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	289
TseI	GCWGC	3 cut(s)	12, 236, 315
TspDTI	ATGAA	1 cut(s)	234
TspRI	CASTG	1 cut(s)	289
VneI	GTGCAC	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	200
XceI	RCATGY	1 cut(s)	315
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.