Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004697

Physical Location & Seq

Genomic Coordinates Reverse (-)

4680399 .. 4683069

Gene Structure 2671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04050.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAAGAAAATCACAGATAAAATAGGAAAAATTTATCTATTAGAACTTGTTTGGGCCCAGATTAATGGATTTGGGCCGAGTAAGGTTATAAGTTTGGCCATGATAGTTTTTCCCAGACGCTTTCTTCTTCAATTTGTTAAGCTCTCCCCGATATTCGCTGCCATGGCTCGCCGCTCAGGAGGTCGATCTGCCCGCCCAGCTCCCCGTCATGCACCTGCACGCAACCCTCCTCAGCCTGTTCGCCAAGCTCCTCCTCCAGCTCCAGCTCAGTCTGGAAGTGGTGGATCGATCCTTTCCGGAATTGGATCAACCATAGCACAGGGTATGGCTTTTGGTACTGGAAGTGCCGTGGCACACAGAGCTGTGGATGCTGTGATGGGTCCTCGCACTATTCAACATGAAACTGTAGTCTCTGAGGCCACTGCTGGTGCTCCAGTCCCCATGGCTAGCAGCATGGGTGGCTCAGATGCATGCAGTAATCACTCCAAGGCATTCCAAGATTGTGTCAACCACTTTGGAAGTGATATAAGCAAGTGCCAGTTCTACATGGATATGCTGTCCGAGTGCAAGAAGAACTCCGGCATGTTGAATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHCH

Protein Analysis

199

Amino Acids

20.84

Weight (kDa)

10.03

Isoelectric Point (pI)

53.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09570 AT5G64400 AT5G64400 AT5G64400
fragaria_vesca	FvH4_2g11490 FvH4_2g11500 FvH4_2g11500
malus_domestica	MD05G1048900.v1.1
prunus_persica	Prupe.8G071500_v2.0.a1 Prupe.8G071500_v2.0.a1
pyrus_communis	pycom05g04050 pycom10g04270
rosa_chinensis	RchiOBHm_Chr6g0270231 RchiOBHm_Chr6g0270481
rosa_laevigata	RLG00000013789
rosa_multiflora	Rmu_sc0002138.1_g000005 Rmu_sc0033942.1_g000002
rosa_roxburghii	Rroxscaffold_7G00197910 Rroxscaffold_7G00198030
rosa_rugosa	Rorug06G0053800 Rorug06G0053900 Rorug06G0054800
rosa_samantha	Rh6AG172400 Rh6AG173700 Rh6BG176700 Rh6BG177400 Rh6CG172400 Rh6CG173200 Rh6DG163700 Rh6DG165600
rosa_wichuraiana	Rw6G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AarI	CACCTGC	1 cut(s)	223
Acc36I	ACCTGC	1 cut(s)	223
AccBSI	CCGCTC	1 cut(s)	174
AccIII	TCCGGA	1 cut(s)	296
AciI	CCGC	2 cut(s)	172, 193
AclWI	GGATC	3 cut(s)	283, 292, 313
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	30
AfaI	GTAC	1 cut(s)	337
AgsI	TTSAA	3 cut(s)	131, 395, 589
AluBI	AGCT	6 cut(s)	142, 200, 248, 260, 266, 362
AluI	AGCT	6 cut(s)	142, 200, 248, 260, 266, 362
Alw21I	GWGCWC	1 cut(s)	433
Alw26I	GTCTC	1 cut(s)	415
AlwI	GGATC	3 cut(s)	283, 292, 313
Aor13HI	TCCGGA	1 cut(s)	296
AoxI	GGCC	4 cut(s)	54, 74, 96, 417
ApaI	GGGCCC	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	158, 450
ApoI	RAATTY	1 cut(s)	30
AseI	ATTAAT	1 cut(s)	63
AspS9I	GGNCC	4 cut(s)	54, 55, 74, 380
AsuNHI	GCTAGC	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	58
BalI	TGGCCA	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	433
BbvCI	CCTCAGC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	145, 462
BccI	CCATC	1 cut(s)	370
BceAI	ACGGC	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	415
BfaI	CTAG	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	405
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	3 cut(s)	159, 172, 451
BlsI	GCNGC	3 cut(s)	160, 173, 452
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	4 cut(s)	54, 55, 74, 380
BmiI	GGNNCC	2 cut(s)	56, 381
BmsI	GCATC	2 cut(s)	358, 457
BmtI	GCTAGC	1 cut(s)	450
BpmI	CTGGAG	3 cut(s)	240, 246, 417
Bpu10I	CCTNAGC	2 cut(s)	175, 231
Bsa29I	ATCGAT	1 cut(s)	287
BsaJI	CCNNGG	4 cut(s)	162, 348, 441, 486
BsaWI	WCCGGW	1 cut(s)	296
Bse1I	ACTGG	3 cut(s)	343, 434, 538
BseAI	TCCGGA	1 cut(s)	296
BseCI	ATCGAT	1 cut(s)	287
BseDI	CCNNGG	4 cut(s)	162, 348, 441, 486
BseGI	GGATG	1 cut(s)	373
BseMII	CTCAG	5 cut(s)	189, 245, 281, 405, 477
BseNI	ACTGG	3 cut(s)	343, 434, 538
BseRI	GAGGAG	3 cut(s)	219, 240, 243
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	145, 462
BseYI	CCCAGC	1 cut(s)	196
BsgI	GTGCAG	1 cut(s)	201
BshFI	GGCC	4 cut(s)	56, 76, 98, 419
BshVI	ATCGAT	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	433
BsiSI	CCGG	2 cut(s)	297, 579
BslFI	GGGAC	1 cut(s)	422
BsmAI	GTCTC	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	422
BsmI	GAATGC	2 cut(s)	491, 595
BsnI	GGCC	4 cut(s)	56, 76, 98, 419
Bsp120I	GGGCCC	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	58, 433
Bsp13I	TCCGGA	1 cut(s)	296
Bsp143I	GATC	4 cut(s)	185, 284, 288, 305
Bsp19I	CCATGG	2 cut(s)	162, 441
BspACI	CCGC	2 cut(s)	172, 193
BspANI	GGCC	4 cut(s)	56, 76, 98, 419
BspCNI	CTCAG	5 cut(s)	188, 244, 280, 406, 476
BspDI	ATCGAT	1 cut(s)	287
BspEI	TCCGGA	1 cut(s)	296
BspLI	GGNNCC	2 cut(s)	56, 381
BspMI	ACCTGC	1 cut(s)	223
BspOI	GCTAGC	1 cut(s)	450
BspPI	GGATC	3 cut(s)	283, 292, 313
BsrBI	CCGCTC	1 cut(s)	174
BsrI	ACTGG	3 cut(s)	343, 434, 538
BssECI	CCNNGG	4 cut(s)	162, 348, 441, 486
BssMI	GATC	4 cut(s)	185, 284, 288, 305
BssT1I	CCWWGG	3 cut(s)	162, 441, 486
Bst4CI	ACNGT	1 cut(s)	406
BstC8I	GCNNGC	5 cut(s)	169, 193, 220, 448, 472
BstDEI	CTNAG	5 cut(s)	175, 231, 267, 414, 463
BstDSI	CCRYGG	3 cut(s)	162, 348, 441
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	4 cut(s)	188, 287, 291, 308
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	4 cut(s)	185, 284, 288, 305
BstMWI	GCNNNNNNNGC	5 cut(s)	164, 197, 359, 368, 459
BstNSI	RCATGY	2 cut(s)	474, 586
BstSFI	CTRYAG	1 cut(s)	405
BstSLI	GKGCMC	1 cut(s)	58
BstV1I	GCAGC	2 cut(s)	145, 462
BstXI	CCANNNNNNTGG	1 cut(s)	65
Bsu15I	ATCGAT	1 cut(s)	287
BsuRI	GGCC	4 cut(s)	56, 76, 98, 419
BsuTUI	ATCGAT	1 cut(s)	287
BtgI	CCRYGG	3 cut(s)	162, 348, 441
BtsCI	GGATG	1 cut(s)	373
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	1 cut(s)	420
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	5 cut(s)	169, 193, 220, 448, 472
Cfr13I	GGNCC	4 cut(s)	54, 55, 74, 380
ClaI	ATCGAT	1 cut(s)	287
CseI	GACGC	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	9 cut(s)	100, 163, 209, 398, 442, 454, 471, 547, 583
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	5 cut(s)	175, 231, 267, 414, 463
DpnI	GATC	4 cut(s)	187, 286, 290, 307
DpnII	GATC	4 cut(s)	185, 284, 288, 305
EaeI	YGGCCR	1 cut(s)	96
Eco130I	CCWWGG	3 cut(s)	162, 441, 486
Eco24I	GRGCYC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	380
EcoO109I	RGGNCCY	1 cut(s)	380
EcoT14I	CCWWGG	3 cut(s)	162, 441, 486
EcoT22I	ATGCAT	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	58
ErhI	CCWWGG	3 cut(s)	162, 441, 486
FaeI	CATG	9 cut(s)	103, 166, 212, 401, 445, 457, 474, 550, 586
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	9 cut(s)	99, 162, 208, 397, 441, 453, 470, 546, 582
FauI	CCCGC	1 cut(s)	200
Fnu4HI	GCNGC	3 cut(s)	159, 172, 451
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	3 cut(s)	159, 172, 451
FspBI	CTAG	1 cut(s)	447
GluI	GCNGC	3 cut(s)	159, 172, 451
GsaI	CCCAGC	1 cut(s)	200
GsuI	CTGGAG	3 cut(s)	240, 246, 417
HaeIII	GGCC	4 cut(s)	56, 76, 98, 419
HapII	CCGG	2 cut(s)	297, 579
HgaI	GACGC	1 cut(s)	126
Hin1II	CATG	9 cut(s)	103, 166, 212, 401, 445, 457, 474, 550, 586
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HpaII	CCGG	2 cut(s)	297, 579
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	3 cut(s)	415, 466, 562
Hpy188III	TCNNGA	3 cut(s)	177, 273, 297
Hpy8I	GTNNAC	1 cut(s)	508
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4V	TGCA	5 cut(s)	212, 218, 470, 474, 567
HpyF10VI	GCNNNNNNNGC	5 cut(s)	164, 197, 359, 368, 459
HpyF3I	CTNAG	5 cut(s)	175, 231, 267, 414, 463
Hsp92II	CATG	9 cut(s)	103, 166, 212, 401, 445, 457, 474, 550, 586
Kpn2I	TCCGGA	1 cut(s)	296
Kzo9I	GATC	4 cut(s)	185, 284, 288, 305
LmnI	GCTCC	4 cut(s)	205, 253, 265, 436
Lsp1109I	GCAGC	2 cut(s)	145, 462
LweI	GCATC	2 cut(s)	358, 457
MaeI	CTAG	1 cut(s)	447
MalI	GATC	4 cut(s)	187, 286, 290, 307
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	4 cut(s)	185, 284, 288, 305
MboII	GAAGA	4 cut(s)	16, 116, 119, 583
MhlI	GDGCHC	2 cut(s)	58, 433
MlsI	TGGCCA	1 cut(s)	98
MluCI	AATT	3 cut(s)	30, 131, 300
MluNI	TGGCCA	1 cut(s)	98
MnlI	CCTC	7 cut(s)	173, 237, 240, 261, 264, 393, 409
Mox20I	TGGCCA	1 cut(s)	98
Mph1103I	ATGCAT	1 cut(s)	472
MroI	TCCGGA	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	98
MseI	TTAA	2 cut(s)	63, 138
MslI	CAYNNNNRTG	1 cut(s)	551
Msp20I	TGGCCA	1 cut(s)	98
MspI	CCGG	2 cut(s)	297, 579
Mva1269I	GAATGC	2 cut(s)	491, 595
MwoI	GCNNNNNNNGC	5 cut(s)	164, 197, 359, 368, 459
NcoI	CCATGG	2 cut(s)	162, 441
NdeII	GATC	4 cut(s)	185, 284, 288, 305
NheI	GCTAGC	1 cut(s)	446
NlaIII	CATG	9 cut(s)	103, 166, 212, 401, 445, 457, 474, 550, 586
NlaIV	GGNNCC	2 cut(s)	56, 381
NmeAIII	GCCGAG	1 cut(s)	102
NsiI	ATGCAT	1 cut(s)	472
NspI	RCATGY	2 cut(s)	474, 586
PaeI	GCATGC	1 cut(s)	474
PaqCI	CACCTGC	1 cut(s)	223
PctI	GAATGC	2 cut(s)	491, 595
PkrI	GCNGC	3 cut(s)	160, 173, 452
PpuMI	RGGWCCY	1 cut(s)	380
PshBI	ATTAAT	1 cut(s)	63
PsiI	TTATAA	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	380
PspFI	CCCAGC	1 cut(s)	196
PspN4I	GGNNCC	2 cut(s)	56, 381
PspOMI	GGGCCC	1 cut(s)	54
PspPI	GGNCC	4 cut(s)	54, 55, 74, 380
PspPPI	RGGWCCY	1 cut(s)	380
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
RseI	CAYNNNNRTG	1 cut(s)	551
SaqAI	TTAA	2 cut(s)	63, 138
SatI	GCNGC	3 cut(s)	159, 172, 451
Sau3AI	GATC	4 cut(s)	185, 284, 288, 305
Sau96I	GGNCC	4 cut(s)	54, 55, 74, 380
SduI	GDGCHC	2 cut(s)	58, 433
SetI	ASST	9 cut(s)	87, 144, 184, 202, 217, 250, 262, 268, 364
SfaNI	GCATC	2 cut(s)	358, 457
SfcI	CTRYAG	1 cut(s)	405
SinI	GGWCC	1 cut(s)	380
SmiMI	CAYNNNNRTG	1 cut(s)	551
SphI	GCATGC	1 cut(s)	474
Sse9I	AATT	3 cut(s)	30, 131, 300
SsiI	CCGC	2 cut(s)	172, 193
SspMI	CTAG	1 cut(s)	447
StyI	CCWWGG	3 cut(s)	162, 441, 486
TaaI	ACNGT	1 cut(s)	406
TaqI	TCGA	2 cut(s)	184, 287
TasI	AATT	3 cut(s)	30, 131, 300
TauI	GCSGC	1 cut(s)	174
Tru1I	TTAA	2 cut(s)	63, 138
Tru9I	TTAA	2 cut(s)	63, 138
TscAI	CASTG	1 cut(s)	427
TseI	GCWGC	2 cut(s)	158, 450
TspDTI	ATGAA	2 cut(s)	17, 414
TspRI	CASTG	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	380
VspI	ATTAAT	1 cut(s)	63
XapI	RAATTY	1 cut(s)	30
XceI	RCATGY	2 cut(s)	474, 586
XspI	CTAG	1 cut(s)	447
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.