Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004697

Physical Location & Seq

Genomic Coordinates Forward (+)

25747856 .. 25750830

Gene Structure 2975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGTCGCCGTAGCTCAGGAGGAAGATCTGCCCCTCGCCCTCGTCCTGCTGCTGCACGCAGCCCAGCTCCTCAACCTGTACACCGTGCACCTCCTCCAGCTCCAGCTCAGGCCAGCGGTGGTGGTGGTGGCATGTTCTCAGGCATTGGTTCAACCATTGCTCAGGGTATGGCTTTTGGTACTGGAAGTGCAGTTGCACACAGGGCTGTTGATTCTGTGATGGGTCCACGAACCATTCAGCATGAGGCTGTTGAGGCTGCTTCTGCATCTGCAGCCCCTGCTGGAAGCGCCATGCTTTCTAGCACCTGTGACATTCATGCTAAGGCTTTCCAAGATTGCATCGGCAGCTATGGAAGCGAGATTAGCAAATGTCAGTTCTACATGGACATGTTGTCCGAGTGCAGGAAGAACTCTGGTTCCGTGATTGGTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHCH

Protein Analysis

144

Amino Acids

14.4

Weight (kDa)

9.43

Isoelectric Point (pI)

66.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09570 AT5G64400 AT5G64400 AT5G64400
fragaria_vesca	FvH4_2g11490 FvH4_2g11500 FvH4_2g11500
malus_domestica	MD05G1048900.v1.1
prunus_persica	Prupe.8G071500_v2.0.a1 Prupe.8G071500_v2.0.a1
pyrus_communis	pycom05g04050 pycom10g04270
rosa_chinensis	RchiOBHm_Chr6g0270231 RchiOBHm_Chr6g0270481
rosa_laevigata	RLG00000013789
rosa_multiflora	Rmu_sc0002138.1_g000005 Rmu_sc0033942.1_g000002
rosa_roxburghii	Rroxscaffold_7G00197910 Rroxscaffold_7G00198030
rosa_rugosa	Rorug06G0053800 Rorug06G0053900 Rorug06G0054800
rosa_samantha	Rh6AG172400 Rh6AG173700 Rh6BG176700 Rh6BG177400 Rh6CG172400 Rh6CG173200 Rh6DG163700 Rh6DG165600
rosa_wichuraiana	Rw6G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	428
AciI	CCGC	1 cut(s)	117
AfaI	GTAC	2 cut(s)	81, 181
AfiI	CCNNNNNNNGG	1 cut(s)	402
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	1 cut(s)	153
AhdI	GACNNNNNGTC	1 cut(s)	391
AloI	GAACNNNNNNTCC	2 cut(s)	401, 433
AluBI	AGCT	5 cut(s)	15, 68, 101, 107, 348
AluI	AGCT	5 cut(s)	15, 68, 101, 107, 348
Alw21I	GWGCWC	1 cut(s)	91
Alw44I	GTGCAC	1 cut(s)	87
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	1 cut(s)	111
ApaLI	GTGCAC	1 cut(s)	87
ApeKI	GCWGC	6 cut(s)	50, 53, 60, 257, 272, 345
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	6 cut(s)	37, 40, 72, 244, 284, 357
BccI	CCATC	1 cut(s)	214
BfaI	CTAG	2 cut(s)	300, 433
BfmI	CTRYAG	1 cut(s)	270
BfoI	RGCGCY	1 cut(s)	291
BglII	AGATCT	1 cut(s)	26
BisI	GCNGC	6 cut(s)	51, 54, 61, 258, 273, 346
BlsI	GCNGC	6 cut(s)	52, 55, 62, 259, 274, 347
Bme18I	GGWCC	1 cut(s)	224
BmeRI	GACNNNNNGTC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	3 cut(s)	225, 418, 430
BmsI	GCATC	2 cut(s)	275, 348
BpmI	CTGGAG	2 cut(s)	81, 87
Bpu10I	CCTNAGC	4 cut(s)	16, 108, 162, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	402
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	402
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	4 cut(s)	30, 122, 153, 176
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	2 cut(s)	60, 84
BseSI	GKGCMC	1 cut(s)	91
BseXI	GCAGC	6 cut(s)	37, 40, 72, 244, 284, 357
BseYI	CCCAGC	1 cut(s)	64
BsgI	GTGCAG	3 cut(s)	39, 210, 421
BshFI	GGCC	1 cut(s)	113
BshNI	GGYRCC	1 cut(s)	428
BsiHKAI	GWGCWC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	402
BsnI	GGCC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp1407I	TGTACA	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	26
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	4 cut(s)	29, 121, 152, 175
BspLI	GGNNCC	3 cut(s)	225, 418, 430
BspMAI	CTGCAG	1 cut(s)	274
BspT107I	GGYRCC	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	156
BsrGI	TGTACA	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	187
BssMI	GATC	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstAUI	TGTACA	1 cut(s)	79
BstC8I	GCNNGC	2 cut(s)	58, 115
BstDEI	CTNAG	5 cut(s)	16, 108, 139, 162, 321
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	9 cut(s)	203, 254, 263, 272, 278, 287, 345, 354, 363
BstNSI	RCATGY	2 cut(s)	136, 391
BstSFI	CTRYAG	1 cut(s)	270
BstSLI	GKGCMC	1 cut(s)	91
BstV1I	GCAGC	6 cut(s)	37, 40, 72, 244, 284, 357
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	113
Cac8I	GCNNGC	2 cut(s)	58, 115
CaiI	CAGNNNCTG	1 cut(s)	278
CfoI	GCGC	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	80, 180
CviAII	CATG	6 cut(s)	133, 242, 292, 317, 382, 388
CviQI	GTAC	2 cut(s)	80, 180
DdeI	CTNAG	5 cut(s)	16, 108, 139, 162, 321
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
DriI	GACNNNNNGTC	1 cut(s)	391
Eam1105I	GACNNNNNGTC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	224
FaeI	CATG	6 cut(s)	136, 245, 295, 320, 385, 391
FaiI	YATR	8 cut(s)	134, 170, 243, 293, 318, 351, 383, 389
FatI	CATG	6 cut(s)	132, 241, 291, 316, 381, 387
Fnu4HI	GCNGC	6 cut(s)	51, 54, 61, 258, 273, 346
Fsp4HI	GCNGC	6 cut(s)	51, 54, 61, 258, 273, 346
FspBI	CTAG	2 cut(s)	300, 433
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	6 cut(s)	51, 54, 61, 258, 273, 346
GsaI	CCCAGC	1 cut(s)	68
GsuI	CTGGAG	2 cut(s)	81, 87
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	113
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	6 cut(s)	136, 245, 295, 320, 385, 391
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HinfI	GANTC	1 cut(s)	212
Hpy166II	GTNNAC	3 cut(s)	82, 89, 227
Hpy188I	TCNGA	1 cut(s)	397
Hpy188III	TCNNGA	1 cut(s)	18
Hpy8I	GTNNAC	3 cut(s)	82, 89, 227
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4V	TGCA	8 cut(s)	56, 89, 191, 197, 266, 272, 339, 402
HpyF10VI	GCNNNNNNNGC	9 cut(s)	203, 254, 263, 272, 278, 287, 345, 354, 363
HpyF3I	CTNAG	5 cut(s)	16, 108, 139, 162, 321
Hsp92II	CATG	6 cut(s)	136, 245, 295, 320, 385, 391
HspAI	GCGC	1 cut(s)	288
Kzo9I	GATC	1 cut(s)	26
LmnI	GCTCC	2 cut(s)	73, 106
Lsp1109I	GCAGC	6 cut(s)	37, 40, 72, 244, 284, 357
LweI	GCATC	2 cut(s)	275, 348
MaeI	CTAG	2 cut(s)	300, 433
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	2 cut(s)	36, 418
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	91
MnlI	CCTC	8 cut(s)	14, 45, 51, 81, 102, 105, 238, 247
MslI	CAYNNNNRTG	1 cut(s)	386
MspA1I	CMGCKG	1 cut(s)	117
MwoI	GCNNNNNNNGC	9 cut(s)	203, 254, 263, 272, 278, 287, 345, 354, 363
NdeII	GATC	1 cut(s)	26
NlaIII	CATG	6 cut(s)	136, 245, 295, 320, 385, 391
NlaIV	GGNNCC	3 cut(s)	225, 418, 430
NmuCI	GTSAC	1 cut(s)	308
NspI	RCATGY	2 cut(s)	136, 391
PciI	ACATGT	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	6 cut(s)	52, 55, 62, 259, 274, 347
PscI	ACATGT	1 cut(s)	387
PspFI	CCCAGC	1 cut(s)	64
PspN4I	GGNNCC	3 cut(s)	225, 418, 430
PspPI	GGNCC	1 cut(s)	224
PstI	CTGCAG	1 cut(s)	274
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	26
RsaI	GTAC	2 cut(s)	81, 181
RsaNI	GTAC	2 cut(s)	80, 180
RseI	CAYNNNNRTG	1 cut(s)	386
SatI	GCNGC	6 cut(s)	51, 54, 61, 258, 273, 346
Sau3AI	GATC	1 cut(s)	26
Sau96I	GGNCC	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	8 cut(s)	17, 70, 79, 94, 103, 109, 308, 350
SfaNI	GCATC	2 cut(s)	275, 348
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	386
SsiI	CCGC	1 cut(s)	117
SspMI	CTAG	2 cut(s)	300, 433
TaaI	ACNGT	1 cut(s)	86
TatI	WGTACW	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	212
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	6 cut(s)	50, 53, 60, 257, 272, 345
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	1 cut(s)	305
TspGWI	ACGGA	1 cut(s)	409
VneI	GTGCAC	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	224
XceI	RCATGY	2 cut(s)	136, 391
XspI	CTAG	2 cut(s)	300, 433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.