Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004697

Physical Location & Seq

Genomic Coordinates Reverse (-)

23988562 .. 23992794

Gene Structure 4233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG172400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCTCGCAGAAGCTCAGGAGGTCGATCTGCCCGCCCAGCTCCTCGTCGGGCTCCAGCACCAGCACCAGTTCGTCAGGCTCCTCCCCCGGCTCCTGCACAAAGTGGAAGCGGTGGATCCATGCTTGGAGGGATCGGATCAACCATAGCCCAGGGAATGGCTTTTGGAGGTGGAAGTGCTGTTGCACACAGGGCCGTGGATGCTGTGATGGGTCCTCGCACCATTCAACATGAAACGGTAGCCTCTGAGGCCTCTGCTGCTCCAGCATCCATGGCTAGCTCTGATGCATGCAGTATTCACTCTAAGGCTTTCCAAGATGTATGCAATACTCTTCTACTTCCTTTATCTTTTATTTTCTTGCAACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHCH

Protein Analysis

122

Amino Acids

12.19

Weight (kDa)

11.14

Isoelectric Point (pI)

77.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09570 AT5G64400 AT5G64400 AT5G64400
fragaria_vesca	FvH4_2g11490 FvH4_2g11500 FvH4_2g11500
malus_domestica	MD05G1048900.v1.1
prunus_persica	Prupe.8G071500_v2.0.a1 Prupe.8G071500_v2.0.a1
pyrus_communis	pycom05g04050 pycom10g04270
rosa_chinensis	RchiOBHm_Chr6g0270231 RchiOBHm_Chr6g0270481
rosa_laevigata	RLG00000013789
rosa_multiflora	Rmu_sc0002138.1_g000005 Rmu_sc0033942.1_g000002
rosa_roxburghii	Rroxscaffold_7G00197910 Rroxscaffold_7G00198030
rosa_rugosa	Rorug06G0053800 Rorug06G0053900 Rorug06G0054800
rosa_samantha	Rh6AG172400 Rh6AG173700 Rh6BG176700 Rh6BG177400 Rh6CG172400 Rh6CG173200 Rh6DG163700 Rh6DG165600
rosa_wichuraiana	Rw6G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	157
AciI	CCGC	2 cut(s)	34, 111
AclWI	GGATC	4 cut(s)	111, 124, 140, 145
AdeI	CACNNNGTG	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	3 cut(s)	15, 41, 279
AluI	AGCT	3 cut(s)	15, 41, 279
AlwI	GGATC	4 cut(s)	111, 124, 140, 145
AoxI	GGCC	2 cut(s)	192, 249
ApeKI	GCWGC	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	192, 212
AsuC2I	CCSGG	1 cut(s)	89
AsuNHI	GCTAGC	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	202
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	152
BcnI	CCSGG	1 cut(s)	89
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	365
BglI	GCCNNNNNGGC	1 cut(s)	248
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	89, 152
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	2 cut(s)	192, 212
BmiI	GGNNCC	5 cut(s)	54, 81, 93, 118, 213
BmrFI	CCNGG	2 cut(s)	89, 152
BmsI	GCATC	3 cut(s)	190, 274, 275
BmtI	GCTAGC	1 cut(s)	279
BpmI	CTGGAG	2 cut(s)	39, 246
Bpu10I	CCTNAGC	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	89
BsaJI	CCNNGG	5 cut(s)	87, 150, 151, 195, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	5 cut(s)	87, 150, 151, 195, 270
BseGI	GGATG	2 cut(s)	205, 266
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMII	CTCAG	2 cut(s)	30, 237
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	2 cut(s)	33, 72
BseXI	GCAGC	1 cut(s)	244
BseYI	CCCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	194, 251
BsiSI	CCGG	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	157
BsnI	GGCC	2 cut(s)	194, 251
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	4 cut(s)	26, 116, 132, 137
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	2 cut(s)	34, 111
BspANI	GGCC	2 cut(s)	194, 251
BspCNI	CTCAG	2 cut(s)	29, 238
BspLI	GGNNCC	5 cut(s)	54, 81, 93, 118, 213
BspOI	GCTAGC	1 cut(s)	279
BspPI	GGATC	4 cut(s)	111, 124, 140, 145
BsrI	ACTGG	1 cut(s)	68
BssECI	CCNNGG	5 cut(s)	87, 150, 151, 195, 270
BssMI	GATC	4 cut(s)	26, 116, 132, 137
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	2 cut(s)	238, 366
Bst6I	CTCTTC	1 cut(s)	336
BstC8I	GCNNGC	4 cut(s)	7, 34, 277, 289
BstDEI	CTNAG	3 cut(s)	16, 246, 303
BstDSI	CCRYGG	2 cut(s)	195, 270
BstF5I	GGATG	2 cut(s)	205, 266
BstKTI	GATC	4 cut(s)	29, 119, 135, 140
BstMBI	GATC	4 cut(s)	26, 116, 132, 137
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 191, 200, 248, 257, 263, 272
BstNI	CCWGG	1 cut(s)	152
BstNSI	RCATGY	1 cut(s)	291
BstSCI	CCNGG	2 cut(s)	87, 150
BstSFI	CTRYAG	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	194, 251
BtgI	CCRYGG	2 cut(s)	195, 270
BtsCI	GGATG	2 cut(s)	205, 266
Cac8I	GCNNGC	4 cut(s)	7, 34, 277, 289
Cfr13I	GGNCC	2 cut(s)	192, 212
CviAII	CATG	4 cut(s)	121, 230, 271, 288
DdeI	CTNAG	3 cut(s)	16, 246, 303
DpnI	GATC	4 cut(s)	28, 118, 134, 139
DpnII	GATC	4 cut(s)	26, 116, 132, 137
DraIII	CACNNNGTG	1 cut(s)	104
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	270
Eco147I	AGGCCT	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	270
EcoT22I	ATGCAT	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	4 cut(s)	124, 233, 274, 291
FaiI	YATR	6 cut(s)	122, 146, 231, 272, 289, 322
FatI	CATG	4 cut(s)	120, 229, 270, 287
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	2 cut(s)	212, 253
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	1 cut(s)	258
GsaI	CCCAGC	1 cut(s)	41
GsuI	CTGGAG	2 cut(s)	39, 246
HaeIII	GGCC	2 cut(s)	194, 251
HapII	CCGG	1 cut(s)	89
Hin1II	CATG	4 cut(s)	124, 233, 274, 291
HpaII	CCGG	1 cut(s)	89
Hpy188I	TCNGA	3 cut(s)	137, 247, 283
Hpy188III	TCNNGA	1 cut(s)	18
Hpy99I	CGWCG	1 cut(s)	51
HpyCH4III	ACNGT	2 cut(s)	238, 366
HpyCH4V	TGCA	6 cut(s)	98, 185, 287, 291, 324, 361
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 191, 200, 248, 257, 263, 272
HpyF3I	CTNAG	3 cut(s)	16, 246, 303
Hsp92II	CATG	4 cut(s)	124, 233, 274, 291
Kzo9I	GATC	4 cut(s)	26, 116, 132, 137
LmnI	GCTCC	5 cut(s)	46, 58, 85, 97, 265
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	3 cut(s)	190, 274, 275
MaeI	CTAG	1 cut(s)	276
MalI	GATC	4 cut(s)	28, 118, 134, 139
MboI	GATC	4 cut(s)	26, 116, 132, 137
MboII	GAAGA	1 cut(s)	323
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	55
MnlI	CCTC	9 cut(s)	14, 54, 93, 122, 161, 225, 241, 253, 262
Mph1103I	ATGCAT	1 cut(s)	289
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	2 cut(s)	89, 152
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	7 cut(s)	38, 191, 200, 248, 257, 263, 272
NciI	CCSGG	1 cut(s)	89
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	4 cut(s)	26, 116, 132, 137
NheI	GCTAGC	1 cut(s)	275
NlaIII	CATG	4 cut(s)	124, 233, 274, 291
NlaIV	GGNNCC	5 cut(s)	54, 81, 93, 118, 213
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	1 cut(s)	291
PaeI	GCATGC	1 cut(s)	291
PasI	CCCWGGG	1 cut(s)	151
PceI	AGGCCT	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	212
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	5 cut(s)	54, 81, 93, 118, 213
PspPI	GGNCC	2 cut(s)	192, 212
PspPPI	RGGWCCY	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	116
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	4 cut(s)	26, 116, 132, 137
Sau96I	GGNCC	2 cut(s)	192, 212
ScrFI	CCNGG	2 cut(s)	89, 152
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	5 cut(s)	17, 25, 43, 172, 281
SfaNI	GCATC	3 cut(s)	190, 274, 275
SfcI	CTRYAG	1 cut(s)	365
SinI	GGWCC	1 cut(s)	212
SphI	GCATGC	1 cut(s)	291
SseBI	AGGCCT	1 cut(s)	251
SsiI	CCGC	2 cut(s)	34, 111
SspMI	CTAG	1 cut(s)	276
StuI	AGGCCT	1 cut(s)	251
StyD4I	CCNGG	2 cut(s)	87, 150
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	2 cut(s)	238, 366
TaqI	TCGA	1 cut(s)	25
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	246
Van91I	CCANNNNNTGG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	212
XceI	RCATGY	1 cut(s)	291
XspI	CTAG	1 cut(s)	276
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.