Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033942.1

Orthogroup ID

OG0004697

Physical Location & Seq

Genomic Coordinates Reverse (-)

1773 .. 2656

Gene Structure 884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033942.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgactgtgaggtcgatctgcccgtccagctcctcgtcgtgcaccagcccctgcaccagtttgtttgtttctgccgcagttcgccaggctcctgctccagctcctgctcagagtggacgcggtgggggtattggatcagtcattgctgagggaatggctttcggtggtggaagtgccattgcacacagagctgtggatggtttgtttggtcctcgcactattcaacatgaaactgtagtctctgctgctccaacacctactgctaacagtatgggtgcctctgatgcttgcagtgttcactccaaggcattccaagattgtgtcaacaactttggaagtgatatcagcaagtgccagttctacatggatatgctctctgagtgcaagaggaacaactctggcatgctgagtgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHCH

Protein Analysis

138

Amino Acids

13.98

Weight (kDa)

7.59

Isoelectric Point (pI)

60.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09570 AT5G64400 AT5G64400 AT5G64400
fragaria_vesca	FvH4_2g11490 FvH4_2g11500 FvH4_2g11500
malus_domestica	MD05G1048900.v1.1
prunus_persica	Prupe.8G071500_v2.0.a1 Prupe.8G071500_v2.0.a1
pyrus_communis	pycom05g04050 pycom10g04270
rosa_chinensis	RchiOBHm_Chr6g0270231 RchiOBHm_Chr6g0270481
rosa_laevigata	RLG00000013789
rosa_multiflora	Rmu_sc0002138.1_g000005 Rmu_sc0033942.1_g000002
rosa_roxburghii	Rroxscaffold_7G00197910 Rroxscaffold_7G00198030
rosa_rugosa	Rorug06G0053800 Rorug06G0053900 Rorug06G0054800
rosa_samantha	Rh6AG172400 Rh6AG173700 Rh6BG176700 Rh6BG177400 Rh6CG172400 Rh6CG173200 Rh6DG163700 Rh6DG165600
rosa_wichuraiana	Rw6G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AccB1I	GGYRCC	1 cut(s)	275
AccII	CGCG	1 cut(s)	120
AciI	CCGC	2 cut(s)	75, 120
AclWI	GGATC	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	3 cut(s)	30, 101, 191
AluI	AGCT	3 cut(s)	30, 101, 191
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	244
Alw44I	GTGCAC	1 cut(s)	40
AlwI	GGATC	1 cut(s)	142
AlwNI	CAGNNNCTG	2 cut(s)	51, 104
ApaLI	GTGCAC	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	44
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	244
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	2 cut(s)	75, 246
BlsI	GCNGC	2 cut(s)	76, 247
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	90, 277
BmrFI	CCNGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	274
BpmI	CTGGAG	1 cut(s)	81
Bpu10I	CCTNAGC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	303
Bse1I	ACTGG	2 cut(s)	57, 355
Bse3DI	GCAATG	2 cut(s)	141, 177
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	1 cut(s)	202
BseMI	GCAATG	2 cut(s)	141, 177
BseMII	CTCAG	4 cut(s)	122, 138, 369, 398
BseNI	ACTGG	2 cut(s)	57, 355
BseRI	GAGGAG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	120
BshNI	GGYRCC	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	244
BsmI	GAATGC	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	15, 134
BspACI	CCGC	2 cut(s)	75, 120
BspCNI	CTCAG	4 cut(s)	121, 139, 370, 399
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	90, 277
BspPI	GGATC	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	275
BsrDI	GCAATG	2 cut(s)	141, 177
BsrI	ACTGG	2 cut(s)	57, 355
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	2 cut(s)	15, 134
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	3 cut(s)	7, 235, 269
BstC8I	GCNNGC	2 cut(s)	289, 404
BstDEI	CTNAG	4 cut(s)	108, 147, 378, 407
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	2 cut(s)	18, 137
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	2 cut(s)	15, 134
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 188, 284
BstNI	CCWGG	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	44
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	298
Cac8I	GCNNGC	2 cut(s)	289, 404
CaiI	CAGNNNCTG	2 cut(s)	51, 104
Cfr13I	GGNCC	1 cut(s)	209
CseI	GACGC	1 cut(s)	126
CviAII	CATG	3 cut(s)	227, 364, 403
CviJI	RGCY	6 cut(s)	30, 48, 89, 101, 158, 191
CviKI_1	RGCY	6 cut(s)	30, 48, 89, 101, 158, 191
DdeI	CTNAG	4 cut(s)	108, 147, 378, 407
DpnI	GATC	2 cut(s)	17, 136
DpnII	GATC	2 cut(s)	15, 134
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	303
Eco32I	GATATC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	84
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	3 cut(s)	230, 367, 406
FaiI	YATR	5 cut(s)	228, 272, 365, 371, 404
FatI	CATG	3 cut(s)	226, 363, 402
Fnu4HI	GCNGC	2 cut(s)	75, 246
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	75, 246
GluI	GCNGC	2 cut(s)	75, 246
GsuI	CTGGAG	1 cut(s)	81
HgaI	GACGC	1 cut(s)	126
Hin1II	CATG	3 cut(s)	230, 367, 406
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
Hpy166II	GTNNAC	4 cut(s)	42, 116, 298, 325
Hpy188I	TCNGA	3 cut(s)	111, 283, 379
Hpy8I	GTNNAC	4 cut(s)	42, 116, 298, 325
Hpy99I	CGWCG	1 cut(s)	40
HpyCH4III	ACNGT	3 cut(s)	7, 235, 269
HpyCH4V	TGCA	5 cut(s)	42, 54, 182, 291, 384
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 188, 284
HpyF3I	CTNAG	4 cut(s)	108, 147, 378, 407
Hsp92II	CATG	3 cut(s)	230, 367, 406
Kzo9I	GATC	2 cut(s)	15, 134
LmnI	GCTCC	5 cut(s)	35, 94, 100, 106, 253
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	1 cut(s)	274
MalI	GATC	2 cut(s)	17, 136
MboI	GATC	2 cut(s)	15, 134
MhlI	GDGCHC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	275
MnlI	CCTC	6 cut(s)	3, 43, 142, 222, 289, 381
MslI	CAYNNNNRTG	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	86
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	3 cut(s)	27, 188, 284
NdeII	GATC	2 cut(s)	15, 134
NlaIII	CATG	3 cut(s)	230, 367, 406
NlaIV	GGNNCC	2 cut(s)	90, 277
NspI	RCATGY	1 cut(s)	406
PaeI	GCATGC	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PctI	GAATGC	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	76, 247
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	90, 277
PspPI	GGNCC	1 cut(s)	209
PstNI	CAGNNNCTG	2 cut(s)	51, 104
RseI	CAYNNNNRTG	1 cut(s)	368
SatI	GCNGC	2 cut(s)	75, 246
Sau3AI	GATC	2 cut(s)	15, 134
Sau96I	GGNCC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	5 cut(s)	14, 32, 103, 193, 259
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	368
SphI	GCATGC	1 cut(s)	406
SsiI	CCGC	2 cut(s)	75, 120
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	3 cut(s)	7, 235, 269
TaqI	TCGA	1 cut(s)	14
TauI	GCSGC	1 cut(s)	77
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	298
VneI	GTGCAC	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	209
XceI	RCATGY	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.