FvH4_2g11490

Hemiasterlin resistant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0004697
Physical Location & Seq
Forward (+)
10054849 .. 10056613
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g11490.t1

Sequence Viewer

Length: 414 bp
ATGGCTCGCAGAAGCTCCGGAGGTCGATCTGCCCGCCCAGCTCCTCGTCGTGCTCCAGCACCAGCCCCAGTTCGCCAGGCTCCTCCTCCAGCTCCTGTACAAAGTGGAGGTGGTGGATCTATGCTTGGGGGGATTGGATCAACCATAGCTCAGGGAATGGCTTTTGGAGGTGGAAGTGCTGTTGCACACAGGGCTGTGGATGCTGTGATGGGTCCTCGCACCATTCAACATGAAACGGTAGCCTCTGAGACCTCTGCTGCTCCAGCATCCATGGCTAGCTCTGATTCATGCAGTATTCACTCTAAGGCTTTCCAAGATTGTGTCAGCAACTTTGGAAGTGACATCAGCAAGTGCCAGTTCTACATGGATATGCTGTCCGAGTGCAGGAAGAACTCTGGCATGTTGAGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHCH

Protein Analysis

138

Amino Acids

13.86

Weight (kDa)

9.49

Isoelectric Point (pI)

76.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHCH PF06747 97 - 131 7.4e-09 CHCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 17
AciI CCGC 1 cut(s) 34
AclWI GGATC 2 cut(s) 124, 145
AfaI GTAC 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 384
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 5 cut(s) 15, 41, 92, 149, 279
AluI AGCT 5 cut(s) 15, 41, 92, 149, 279
Alw21I GWGCWC 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 2 cut(s) 124, 145
AlwNI CAGNNNCTG 1 cut(s) 95
Aor13HI TCCGGA 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 212
AsuNHI GCTAGC 1 cut(s) 275
AvaII GGWCC 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 244
BccI CCATC 1 cut(s) 202
BciT130I CCWGG 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 2 cut(s) 276, 412
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 77
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 2 cut(s) 81, 213
BmrFI CCNGG 1 cut(s) 77
BmrI ACTGGG 1 cut(s) 62
BmsI GCATC 2 cut(s) 190, 275
BmtI GCTAGC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 62
BpmI CTGGAG 3 cut(s) 39, 72, 246
Bpu10I CCTNAGC 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 270
BsaWI WCCGGW 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 384
Bse1I ACTGG 2 cut(s) 68, 355
BseAI TCCGGA 1 cut(s) 17
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 2 cut(s) 205, 266
BseLI CCNNNNNNNGG 1 cut(s) 384
BseMII CTCAG 2 cut(s) 164, 237
BseNI ACTGG 2 cut(s) 68, 355
BseRI GAGGAG 3 cut(s) 33, 72, 75
BseXI GCAGC 1 cut(s) 244
BseYI CCCAGC 1 cut(s) 37
BsgI GTGCAG 1 cut(s) 403
BsiHKAI GWGCWC 1 cut(s) 55
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 384
BsmAI GTCTC 1 cut(s) 242
Bso31I GGTCTC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 55
Bsp13I TCCGGA 1 cut(s) 17
Bsp1407I TGTACA 1 cut(s) 97
Bsp143I GATC 3 cut(s) 26, 116, 137
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 1 cut(s) 34
BspCNI CTCAG 2 cut(s) 163, 238
BspEI TCCGGA 1 cut(s) 17
BspLI GGNNCC 2 cut(s) 81, 213
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 2 cut(s) 124, 145
BspTNI GGTCTC 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 97
BsrI ACTGG 2 cut(s) 68, 355
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 3 cut(s) 26, 116, 137
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 238
BstAUI TGTACA 1 cut(s) 97
BstC8I GCNNGC 3 cut(s) 7, 34, 277
BstDEI CTNAG 3 cut(s) 150, 246, 303
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 2 cut(s) 205, 266
BstKTI GATC 3 cut(s) 29, 119, 140
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 3 cut(s) 26, 116, 137
BstMWI GCNNNNNNNGC 5 cut(s) 38, 191, 200, 263, 272
BstNI CCWGG 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 403
BstSCI CCNGG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BtgI CCRYGG 1 cut(s) 270
BtsCI GGATG 2 cut(s) 205, 266
Cac8I GCNNGC 3 cut(s) 7, 34, 277
CaiI CAGNNNCTG 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 98
CviAII CATG 5 cut(s) 230, 271, 288, 364, 400
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 3 cut(s) 150, 246, 303
DpnI GATC 3 cut(s) 28, 118, 139
DpnII GATC 3 cut(s) 26, 116, 137
Eco130I CCWWGG 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 5 cut(s) 233, 274, 291, 367, 403
FaiI YATR 8 cut(s) 122, 146, 231, 272, 289, 365, 371, 401
FatI CATG 5 cut(s) 229, 270, 287, 363, 399
FauI CCCGC 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 2 cut(s) 212, 253
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 2 cut(s) 276, 412
GluI GCNGC 1 cut(s) 258
GsaI CCCAGC 1 cut(s) 41
GsuI CTGGAG 3 cut(s) 39, 72, 246
HapII CCGG 1 cut(s) 18
Hin1II CATG 5 cut(s) 233, 274, 291, 367, 403
HinfI GANTC 1 cut(s) 284
HpaII CCGG 1 cut(s) 18
Hpy188I TCNGA 3 cut(s) 247, 283, 379
Hpy188III TCNNGA 1 cut(s) 18
Hpy99I CGWCG 1 cut(s) 51
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 3 cut(s) 185, 291, 384
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 191, 200, 263, 272
HpyF3I CTNAG 3 cut(s) 150, 246, 303
Hsp92II CATG 5 cut(s) 233, 274, 291, 367, 403
Kpn2I TCCGGA 1 cut(s) 17
Kzo9I GATC 3 cut(s) 26, 116, 137
LmnI GCTCC 6 cut(s) 20, 46, 58, 85, 97, 265
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 2 cut(s) 190, 275
MaeI CTAG 2 cut(s) 276, 412
MaeIII GTNAC 1 cut(s) 338
MalI GATC 3 cut(s) 28, 118, 139
MboI GATC 3 cut(s) 26, 116, 137
MboII GAAGA 1 cut(s) 400
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 55
MnlI CCTC 9 cut(s) 14, 54, 93, 96, 101, 161, 225, 253, 262
MroI TCCGGA 1 cut(s) 17
MslI CAYNNNNRTG 1 cut(s) 368
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 77
MvaI CCWGG 1 cut(s) 77
MwoI GCNNNNNNNGC 5 cut(s) 38, 191, 200, 263, 272
NcoI CCATGG 1 cut(s) 270
NdeII GATC 3 cut(s) 26, 116, 137
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 5 cut(s) 233, 274, 291, 367, 403
NlaIV GGNNCC 2 cut(s) 81, 213
NmuCI GTSAC 1 cut(s) 338
NspI RCATGY 1 cut(s) 403
PfeI GAWTC 1 cut(s) 284
PkrI GCNGC 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 212
Psp5II RGGWCCY 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 75
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 2 cut(s) 81, 213
PspPI GGNCC 1 cut(s) 212
PspPPI RGGWCCY 1 cut(s) 212
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
RseI CAYNNNNRTG 1 cut(s) 368
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 3 cut(s) 26, 116, 137
Sau96I GGNCC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 77
SduI GDGCHC 1 cut(s) 55
SetI ASST 9 cut(s) 17, 25, 43, 94, 112, 151, 172, 254, 281
SfaNI GCATC 2 cut(s) 190, 275
SinI GGWCC 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 368
SsiI CCGC 1 cut(s) 34
SspMI CTAG 2 cut(s) 276, 412
StyD4I CCNGG 1 cut(s) 75
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 238
TaqI TCGA 1 cut(s) 25
TatI WGTACW 1 cut(s) 97
TfiI GAWTC 1 cut(s) 284
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 2 cut(s) 246, 276
VpaK11BI GGWCC 1 cut(s) 212
XceI RCATGY 1 cut(s) 403
XspI CTAG 2 cut(s) 276, 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.