Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004697

Physical Location & Seq

Genomic Coordinates Forward (+)

10458434 .. 10460904

Gene Structure 2471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G071500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCTCGCCGATCAGGAGGTCGTTCTGCCCGTCCAGCTCCAGCTCCTCGTCATGCACCAGCACGCAACCCTCCTCAGACAGTCAAACAAGCTCCTCCTCCGGCTCCAGTTCAGGGTGGAGGTGGTGGAATTCTCTCAGGAATTGGATCAACCATAGTTCAAGGTATTGGTTTTGGGACTGGAAGTGCTGTGGCACACAGGGCCGTTGATGCTGTGATGGGTCCTCGCACTATTCAACATGAAACTGTAGTCTCTGAGGCTGCTGCTGCTGCTCCAGCACCCATTTCTAGCAGCATGAGTGGTTCTGATGCCTGCAGTAATCACTCCAAGGCCTTCCAAGATTGTGTCAACCACTTTGGAAGTGATATCAGCAAGTGCCAGTTCTACATGGATATGCTGTCTGAGTGCAAGAAGAACTCTGCCTCCGGCATGTTGAGTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CHCH

Protein Analysis

148

Amino Acids

14.84

Weight (kDa)

9.38

Isoelectric Point (pI)

65.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09570 AT5G64400 AT5G64400 AT5G64400
fragaria_vesca	FvH4_2g11490 FvH4_2g11500 FvH4_2g11500
malus_domestica	MD05G1048900.v1.1
prunus_persica	Prupe.8G071500_v2.0.a1 Prupe.8G071500_v2.0.a1
pyrus_communis	pycom05g04050 pycom10g04270
rosa_chinensis	RchiOBHm_Chr6g0270231 RchiOBHm_Chr6g0270481
rosa_laevigata	RLG00000013789
rosa_multiflora	Rmu_sc0002138.1_g000005 Rmu_sc0033942.1_g000002
rosa_roxburghii	Rroxscaffold_7G00197910 Rroxscaffold_7G00198030
rosa_rugosa	Rorug06G0053800 Rorug06G0053900 Rorug06G0054800
rosa_samantha	Rh6AG172400 Rh6AG173700 Rh6BG176700 Rh6BG177400 Rh6CG172400 Rh6CG173200 Rh6DG163700 Rh6DG165600
rosa_wichuraiana	Rw6G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	2 cut(s)	161, 236
AloI	GAACNNNNNNTCC	2 cut(s)	407, 439
AluBI	AGCT	3 cut(s)	38, 44, 92
AluI	AGCT	3 cut(s)	38, 44, 92
Alw26I	GTCTC	1 cut(s)	256
AlwI	GGATC	1 cut(s)	154
AoxI	GGCC	2 cut(s)	201, 330
ApeKI	GCWGC	5 cut(s)	260, 263, 266, 269, 291
ApoI	RAATTY	1 cut(s)	129
AspS9I	GGNCC	2 cut(s)	201, 221
AvaII	GGWCC	1 cut(s)	221
BbvI	GCAGC	5 cut(s)	247, 250, 253, 256, 303
BccI	CCATC	1 cut(s)	211
BceAI	ACGGC	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	2 cut(s)	246, 313
BisI	GCNGC	5 cut(s)	261, 264, 267, 270, 292
BlsI	GCNGC	5 cut(s)	262, 265, 268, 271, 293
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	201, 221
BmiI	GGNNCC	2 cut(s)	105, 222
BmsI	GCATC	2 cut(s)	199, 298
BpmI	CTGGAG	3 cut(s)	24, 90, 258
BsaJI	CCNNGG	1 cut(s)	327
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse1I	ACTGG	3 cut(s)	107, 184, 379
BseDI	CCNNGG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMII	CTCAG	4 cut(s)	89, 150, 246, 393
BseNI	ACTGG	3 cut(s)	107, 184, 379
BseRI	GAGGAG	4 cut(s)	36, 63, 84, 87
BseXI	GCAGC	5 cut(s)	247, 250, 253, 256, 303
BshFI	GGCC	2 cut(s)	203, 332
BsiSI	CCGG	2 cut(s)	101, 426
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	2 cut(s)	203, 332
Bsp143I	GATC	2 cut(s)	11, 146
BspANI	GGCC	2 cut(s)	203, 332
BspCNI	CTCAG	4 cut(s)	88, 149, 247, 394
BspLI	GGNNCC	2 cut(s)	105, 222
BspMAI	CTGCAG	1 cut(s)	317
BspPI	GGATC	1 cut(s)	154
BsrI	ACTGG	3 cut(s)	107, 184, 379
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	2 cut(s)	11, 146
BssT1I	CCWWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	82, 247
BstC8I	GCNNGC	3 cut(s)	7, 64, 313
BstDEI	CTNAG	4 cut(s)	75, 136, 255, 402
BstKTI	GATC	2 cut(s)	14, 149
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	2 cut(s)	11, 146
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 200, 209, 266, 269, 275
BstNSI	RCATGY	1 cut(s)	433
BstSFI	CTRYAG	2 cut(s)	246, 313
BstV1I	GCAGC	5 cut(s)	247, 250, 253, 256, 303
BsuRI	GGCC	2 cut(s)	203, 332
Cac8I	GCNNGC	3 cut(s)	7, 64, 313
Cfr13I	GGNCC	2 cut(s)	201, 221
CviAII	CATG	5 cut(s)	53, 239, 295, 388, 430
CviJI	RGCY	8 cut(s)	5, 38, 44, 92, 104, 203, 260, 332
CviKI_1	RGCY	8 cut(s)	5, 38, 44, 92, 104, 203, 260, 332
DdeI	CTNAG	4 cut(s)	75, 136, 255, 402
DpnI	GATC	2 cut(s)	13, 148
DpnII	GATC	2 cut(s)	11, 146
Eco130I	CCWWGG	1 cut(s)	327
Eco147I	AGGCCT	1 cut(s)	332
Eco32I	GATATC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	129
EcoRV	GATATC	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	5 cut(s)	56, 242, 298, 391, 433
FaiI	YATR	7 cut(s)	54, 155, 240, 296, 389, 395, 431
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	5 cut(s)	52, 238, 294, 387, 429
Fnu4HI	GCNGC	5 cut(s)	261, 264, 267, 270, 292
Fsp4HI	GCNGC	5 cut(s)	261, 264, 267, 270, 292
FspBI	CTAG	1 cut(s)	288
GluI	GCNGC	5 cut(s)	261, 264, 267, 270, 292
GsuI	CTGGAG	3 cut(s)	24, 90, 258
HaeIII	GGCC	2 cut(s)	203, 332
HapII	CCGG	2 cut(s)	101, 426
Hin1II	CATG	5 cut(s)	56, 242, 298, 391, 433
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HpaII	CCGG	2 cut(s)	101, 426
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	4 cut(s)	78, 256, 307, 403
Hpy188III	TCNNGA	2 cut(s)	15, 138
Hpy8I	GTNNAC	1 cut(s)	349
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	2 cut(s)	82, 247
HpyCH4V	TGCA	3 cut(s)	56, 315, 408
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 200, 209, 266, 269, 275
HpyF3I	CTNAG	4 cut(s)	75, 136, 255, 402
Hsp92II	CATG	5 cut(s)	56, 242, 298, 391, 433
Kzo9I	GATC	2 cut(s)	11, 146
LmnI	GCTCC	5 cut(s)	43, 49, 97, 109, 277
Lsp1109I	GCAGC	5 cut(s)	247, 250, 253, 256, 303
LweI	GCATC	2 cut(s)	199, 298
MaeI	CTAG	1 cut(s)	288
MalI	GATC	2 cut(s)	13, 148
MboI	GATC	2 cut(s)	11, 146
MboII	GAAGA	1 cut(s)	424
MluCI	AATT	2 cut(s)	129, 141
MslI	CAYNNNNRTG	1 cut(s)	392
MspI	CCGG	2 cut(s)	101, 426
MwoI	GCNNNNNNNGC	6 cut(s)	35, 200, 209, 266, 269, 275
NdeII	GATC	2 cut(s)	11, 146
NlaIII	CATG	5 cut(s)	56, 242, 298, 391, 433
NlaIV	GGNNCC	2 cut(s)	105, 222
NspI	RCATGY	1 cut(s)	433
PceI	AGGCCT	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PkrI	GCNGC	5 cut(s)	262, 265, 268, 271, 293
PpuMI	RGGWCCY	1 cut(s)	221
Psp5II	RGGWCCY	1 cut(s)	221
PspN4I	GGNNCC	2 cut(s)	105, 222
PspPI	GGNCC	2 cut(s)	201, 221
PspPPI	RGGWCCY	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	317
RseI	CAYNNNNRTG	1 cut(s)	392
SatI	GCNGC	5 cut(s)	261, 264, 267, 270, 292
Sau3AI	GATC	2 cut(s)	11, 146
Sau96I	GGNCC	2 cut(s)	201, 221
SetI	ASST	6 cut(s)	22, 40, 46, 94, 124, 166
SfaNI	GCATC	2 cut(s)	199, 298
SfcI	CTRYAG	2 cut(s)	246, 313
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	392
Sse9I	AATT	2 cut(s)	129, 141
SseBI	AGGCCT	1 cut(s)	332
SspMI	CTAG	1 cut(s)	288
StuI	AGGCCT	1 cut(s)	332
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	82, 247
TasI	AATT	2 cut(s)	129, 141
TseI	GCWGC	5 cut(s)	260, 263, 266, 269, 291
TspDTI	ATGAA	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	129
XceI	RCATGY	1 cut(s)	433
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.