Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012774

Physical Location & Seq

Genomic Coordinates Forward (+)

3267635 .. 3268813

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCGTTTAATCACAGAAAAATGCTTCTTTCATGTCTACAGTTTAAAGATTTACGCTTTTGTTTCCGGCAATACCCTCCCCCGCCACCACCACCACCGCCACCGAGGGAGCTCTCTCTCCTACTCCCCACCTCGATCTGCGTCGTCGGCTCAATCATACTCTTTCTATTTCTAGTCTTCTTCCTCTACCTCCACATCACGCAACAACGGCGGATTTCAGCCGCCAGCGTAACTCCCGGTGACACAAACCAACAGGAAGATGAGGACGAAACAGAGGAGAGAGATTTCTCCGACTTTCATCACGTTTGGCAAATCCCAACCGTCGGTCTCCACCGTTCCGCGATCAACTCGATCACAGTCGTTGGATTCAAAAAGGGAGAAGGGATAATCGACGGCACAGAATGCTCTGTCTGCTTAAACGAGTTTGAAGAAGACGAGTCGCTGAGACTGTTACCAAAGTGTAGCCATGCCTTTCATCTAAATTGCATCGACACTTGGTTGCTCTCTCACAAGAACTGTCCTTTATGTCGTGCCCCTGTACTTCTTATCACTGAACCACCTCATCAAGAAACAGAGACGAATCATCAACCAGATTCTGAATCGAGCAATGACCTCCGTGGAAGACAAGACAGTTCCAGATCTAGAAGAAACCATAACATTTTTCTTCCAAGGGCACAAAGTGATTTGGCAAACTACTGTGGCTCAGGAAGAGTAGAAAACGTGAGAAGATCGTTTTCAATTGGAGGAAGCTTATCACTTTGCGATGGTATTAACAATGCTACTAGAAGTGGAAGACAGTTCTATACCAGCTTCAGTGCTAACTTGTTCTCATCATCAAGAAGAGTAAGGAACGAACAACCGATTCCACAAAACCAAATGCCATCCGTAACTGGTAACACCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002238 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043067 GO:0043068 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051865 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

301

Amino Acids

34.04

Weight (kDa)

6.59

Isoelectric Point (pI)

66.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	134 - 177	1.7e-14	Ring finger domain
zf-RING_11	PF17123	134 - 163	1.3e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	134 - 176	1.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	134 - 177	9e-06	zinc-RING finger domain
zf-C3HC4	PF00097	135 - 176	9.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11	PF12861	135 - 178	8.4e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1	PF12678	138 - 177	9.1e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0012774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10380
fragaria_vesca	FvH4_1g20164
malus_domestica	MD01G1036900.v1.1 MD15G1317400.v1.1
prunus_persica	Prupe.6G194300_v2.0.a1
pyrus_communis	pycom01g06390 pycom15g27980
rosa_chinensis	RchiOBHm_Chr2g0112241
rosa_laevigata	RLG00000017962
rosa_multiflora	Rmu_co8477273.1_g000001 Rmu_sc0001386.1_g000026
rosa_roxburghii	Rroxscaffold_2G00131620
rosa_rugosa	Rorug02G0179300
rosa_samantha	Rh2AG231700 Rh2BG245200 Rh2CG236100 Rh2DG239600
rosa_wichuraiana	Rw2G017980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	37
AccII	CGCG	1 cut(s)	341
AciI	CCGC	5 cut(s)	83, 98, 211, 222, 339
AcuI	CTGAAG	1 cut(s)	796
AdeI	CACNNNGTG	1 cut(s)	680
AfaI	GTAC	1 cut(s)	540
AfiI	CCNNNNNNNGG	1 cut(s)	323
AgsI	TTSAA	3 cut(s)	370, 428, 738
AluBI	AGCT	3 cut(s)	112, 750, 810
AluI	AGCT	3 cut(s)	112, 750, 810
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	3 cut(s)	332, 439, 569
AlwNI	CAGNNNCTG	1 cut(s)	596
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	251
BaeGI	GKGCMC	2 cut(s)	535, 676
BanII	GRGCYC	1 cut(s)	114
BbsI	GAAGAC	4 cut(s)	169, 438, 628, 799
Bbv12I	GWGCWC	1 cut(s)	114
BccI	CCATC	2 cut(s)	758, 889
BceAI	ACGGC	2 cut(s)	224, 409
BcnI	CCSGG	1 cut(s)	237
BcoDI	GTCTC	3 cut(s)	332, 439, 569
BfaI	CTAG	3 cut(s)	173, 642, 783
BfmI	CTRYAG	1 cut(s)	38
BglII	AGATCT	1 cut(s)	638
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	495
BpiI	GAAGAC	4 cut(s)	169, 438, 628, 799
Bpu10I	CCTNAGC	1 cut(s)	703
BpuMI	CCSGG	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	104, 616, 668
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse1I	ACTGG	2 cut(s)	895, 900
Bse3DI	GCAATG	1 cut(s)	613
BseDI	CCNNGG	3 cut(s)	104, 616, 668
BseGI	GGATG	1 cut(s)	881
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMI	GCAATG	1 cut(s)	613
BseMII	CTCAG	2 cut(s)	434, 717
BseNI	ACTGG	2 cut(s)	895, 900
BseRI	GAGGAG	1 cut(s)	290
BseSI	GKGCMC	2 cut(s)	535, 676
Bsh1236I	CGCG	1 cut(s)	341
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	67, 237
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	3 cut(s)	332, 439, 569
BsmBI	CGTCTC	1 cut(s)	569
BsmI	GAATGC	1 cut(s)	407
Bso31I	GGTCTC	1 cut(s)	332
Bsp1286I	GDGCHC	3 cut(s)	114, 535, 676
Bsp143I	GATC	5 cut(s)	135, 342, 351, 638, 728
BspACI	CCGC	5 cut(s)	83, 98, 211, 222, 339
BspCNI	CTCAG	2 cut(s)	435, 716
BspFNI	CGCG	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	613
BsrI	ACTGG	2 cut(s)	895, 900
BssECI	CCNNGG	3 cut(s)	104, 616, 668
BssMI	GATC	5 cut(s)	135, 342, 351, 638, 728
BssT1I	CCWWGG	1 cut(s)	668
Bst4CI	ACNGT	9 cut(s)	42, 322, 335, 358, 450, 518, 632, 698, 798
Bst6I	CTCTTC	2 cut(s)	703, 835
BstAPI	GCANNNNNTGC	1 cut(s)	402
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	2 cut(s)	443, 703
BstDSI	CCRYGG	1 cut(s)	616
BstF5I	GGATG	1 cut(s)	881
BstFNI	CGCG	1 cut(s)	341
BstKTI	GATC	5 cut(s)	138, 345, 354, 641, 731
BstMAI	GTCTC	3 cut(s)	332, 439, 569
BstMBI	GATC	5 cut(s)	135, 342, 351, 638, 728
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 208, 402, 411
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	38
BstSLI	GKGCMC	2 cut(s)	535, 676
BstUI	CGCG	1 cut(s)	341
BstV2I	GAAGAC	4 cut(s)	169, 438, 628, 799
BstX2I	RGATCY	1 cut(s)	638
BstYI	RGATCY	1 cut(s)	638
BtgI	CCRYGG	1 cut(s)	616
BtgZI	GCGATG	1 cut(s)	777
BtsCI	GGATG	1 cut(s)	881
BtsIMutI	CAGTG	2 cut(s)	549, 820
Cac8I	GCNNGC	1 cut(s)	226
CaiI	CAGNNNCTG	1 cut(s)	596
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	539
CviAII	CATG	2 cut(s)	33, 467
CviJI	RGCY	7 cut(s)	112, 150, 221, 465, 702, 750, 810
CviKI_1	RGCY	7 cut(s)	112, 150, 221, 465, 702, 750, 810
CviQI	GTAC	1 cut(s)	539
DdeI	CTNAG	2 cut(s)	443, 703
DpnI	GATC	5 cut(s)	137, 344, 353, 640, 730
DpnII	GATC	5 cut(s)	135, 342, 351, 638, 728
DraI	TTTAAA	1 cut(s)	46
DraIII	CACNNNGTG	1 cut(s)	680
Eam1104I	CTCTTC	2 cut(s)	703, 835
EarI	CTCTTC	2 cut(s)	703, 835
EciI	GGCGGA	1 cut(s)	226
Ecl136II	GAGCTC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	668
Eco24I	GRGCYC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	332
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	796
EcoICRI	GAGCTC	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	668
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	668
Esp3I	CGTCTC	1 cut(s)	569
FaeI	CATG	2 cut(s)	36, 470
FaiI	YATR	6 cut(s)	34, 158, 468, 526, 654, 804
FatI	CATG	2 cut(s)	32, 466
FauI	CCCGC	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	868
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	3 cut(s)	173, 642, 783
GluI	GCNGC	1 cut(s)	222
HapII	CCGG	2 cut(s)	67, 237
HgaI	GACGC	1 cut(s)	130
Hin1II	CATG	2 cut(s)	36, 470
HindIII	AAGCTT	1 cut(s)	748
HinfI	GANTC	6 cut(s)	366, 437, 580, 593, 599, 862
HpaII	CCGG	2 cut(s)	67, 237
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	2 cut(s)	292, 598
Hpy188III	TCNNGA	5 cut(s)	566, 636, 642, 705, 837
Hpy8I	GTNNAC	1 cut(s)	38
Hpy99I	CGWCG	4 cut(s)	146, 149, 326, 395
HpyAV	CCTTC	1 cut(s)	374
HpyCH4III	ACNGT	9 cut(s)	42, 322, 335, 358, 450, 518, 632, 698, 798
HpyCH4IV	ACGT	2 cut(s)	303, 720
HpyCH4V	TGCA	1 cut(s)	486
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 208, 402, 411
HpyF3I	CTNAG	2 cut(s)	443, 703
HpySE526I	ACGT	2 cut(s)	303, 720
Hsp92II	CATG	2 cut(s)	36, 470
Kzo9I	GATC	5 cut(s)	135, 342, 351, 638, 728
LmnI	GCTCC	1 cut(s)	109
LweI	GCATC	1 cut(s)	495
MaeI	CTAG	3 cut(s)	173, 642, 783
MaeII	ACGT	2 cut(s)	303, 720
MaeIII	GTNAC	5 cut(s)	229, 239, 450, 886, 893
MalI	GATC	5 cut(s)	137, 344, 353, 640, 730
MboI	GATC	5 cut(s)	135, 342, 351, 638, 728
MfeI	CAATTG	1 cut(s)	738
MflI	RGATCY	1 cut(s)	638
MhlI	GDGCHC	3 cut(s)	114, 535, 676
MluCI	AATT	2 cut(s)	481, 738
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	2 cut(s)	315, 343
MseI	TTAA	5 cut(s)	9, 45, 416, 771, 904
MspI	CCGG	2 cut(s)	67, 237
MspR9I	CCNGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	738
Mva1269I	GAATGC	1 cut(s)	407
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	4 cut(s)	147, 208, 402, 411
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	5 cut(s)	135, 342, 351, 638, 728
NlaIII	CATG	2 cut(s)	36, 470
NmuCI	GTSAC	1 cut(s)	239
PctI	GAATGC	1 cut(s)	407
PfeI	GAWTC	5 cut(s)	366, 580, 593, 599, 862
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
Psp124BI	GAGCTC	1 cut(s)	114
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	638
RsaI	GTAC	1 cut(s)	540
RsaNI	GTAC	1 cut(s)	539
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	5 cut(s)	9, 45, 416, 771, 904
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	5 cut(s)	135, 342, 351, 638, 728
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	3 cut(s)	114, 535, 676
SetI	ASST	9 cut(s)	114, 134, 192, 306, 562, 615, 723, 752, 812
SfaNI	GCATC	1 cut(s)	495
SfcI	CTRYAG	1 cut(s)	38
Sse9I	AATT	2 cut(s)	481, 738
SsiI	CCGC	5 cut(s)	83, 98, 211, 222, 339
SspMI	CTAG	3 cut(s)	173, 642, 783
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	668
TaaI	ACNGT	9 cut(s)	42, 322, 335, 358, 450, 518, 632, 698, 798
TaiI	ACGT	2 cut(s)	306, 723
TaqI	TCGA	5 cut(s)	134, 350, 390, 489, 602
TaqII	GACCGA	1 cut(s)	314
TasI	AATT	2 cut(s)	481, 738
TatI	WGTACW	1 cut(s)	538
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	5 cut(s)	366, 580, 593, 599, 862
Tru1I	TTAA	5 cut(s)	9, 45, 416, 771, 904
Tru9I	TTAA	5 cut(s)	9, 45, 416, 771, 904
TscAI	CASTG	2 cut(s)	556, 820
TseFI	GTSAC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	3 cut(s)	21, 287, 464
TspGWI	ACGGA	2 cut(s)	605, 874
TspRI	CASTG	2 cut(s)	556, 820
XbaI	TCTAGA	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	37
XspI	CTAG	3 cut(s)	173, 642, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.