Rw2G017980

RING-H2 finger protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
22732236 .. 22733530
1295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G017980.1

Sequence Viewer

Length: 1194 bp
ATGGGGTTTTCTCAGAGAAAGCTCCTCCCAGAAAACATCTTTAACAATCCAGGTGAAGCCATCTGTAAACTTAGTTGTGACCCAAATCTAAATAAACAAGGCTTGTGTGCTGAATCTTGCCGCAACATCTGCCCAAAAGTCTGTAAATTTTCTGTGGACTATACTGGCCAGAAGCATCTGATCCAAACGAGTATGATAGTTGGGTCCTGTATGATCGGGGTTTCTCTTTTTCTCTGTATTGTTTTTGCAATTTTGAGATACTATTCGAGGCGGAGAAATCCCAGACGGAGAAGCCCGCCGATTCTGTTTGCTACGGCGGAAGATTTTCTTGATGAGGATCATGGGCCTGTGCTTGATCACCCCATTTGGTACATCCACACTGTGGGTCTGCCTCAGGCTTTGATCGATTCCATTACAGTTTGTAAGTATAGAAAAGATGAGGGTTTGATTGAGGGGACGGATTGTTCTGTTTGCTTGAGTGAGTTTGAGGAAGATGAGAGTCTCAGGCTTTTGCCAAAGTGTAGTCATGCTTTTCACATCCCTTGTATTGATACATGGTTGAGATCACATAAGAATTGCCCTCTTTGCCGCGCTCCGATTGTTTGTGGTGCTGCTAGTAATCAAGTGAGTGTCCCGGATTCGATTGCGAGTGGTTCGGGTTCTGGGGAGAGCATTCGGGTGGAGAATTTGGAGAGTGTTGAAGGGATTGGAAGAGGGACTAGTGAGGTTGGAGGTACAGATGATGAGAATGTCGGTGCAATTTCTATTGATAGAACGAGTGTTGAAAGTTCAAAGGTTTTGCCTAATTCTATTTTGGCTGAGGGAAGTTCTGATCCAAGAGCATTGAGCGATTTGGCGGATAATAGACGAGTGACTGAAGATGATGTACAGCCAATGAGGAGGTCAGTGTCGGTGGATTCGGTGTCTGCTTCAAGAATATATCATGCTGTGGCCAATGCTGTTCCGGAACAAGGAAGTTCGAATTCCCAATTAGTACTTGTAAAGAATCCAAAGTTGGGGATTGTTCGGAAGCAGGACAGTGCAAGTTCTACCCTATCCAAGCATTGGAGAAGTTCTTCAAATGGTCTTTCTCTGCAGATGGCGCCAATGGCAATGAAAAGGCCTTTCCCCTCTGGCAGGAAGCTTTTCTCATCGAAACACAGAAGGACTCTTAGCTCAGTCCTTCCCTTATGA

Protein Analysis

397

Amino Acids

43.42

Weight (kDa)

8.11

Isoelectric Point (pI)

57.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 154 - 197 2.9e-14 Ring finger domain
zf-RING_11 PF17123 154 - 183 1.1e-10 RING-like zinc finger
zf-C3HC4_2 PF13923 155 - 196 9.3e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 155 - 196 1.5e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 156 - 197 5e-09 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012774)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1102
AccB7I CCANNNNNTGG 2 cut(s) 382, 1065
AccII CGCG 1 cut(s) 591
AccIII TCCGGA 1 cut(s) 964
AciI CCGC 6 cut(s) 121, 271, 296, 317, 589, 857
AclWI GGATC 3 cut(s) 175, 345, 827
AcoI YGGCCR 2 cut(s) 166, 951
AcsI RAATTY 3 cut(s) 146, 685, 982
AcuI CTGAAG 1 cut(s) 897
AcyI GRCGYC 1 cut(s) 1103
AdeI CACNNNGTG 1 cut(s) 382
AfaI GTAC 4 cut(s) 371, 736, 888, 996
AfiI CCNNNNNNNGG 5 cut(s) 382, 971, 1016, 1065, 1137
AgsI TTSAA 5 cut(s) 701, 785, 792, 933, 1080
AhlI ACTAGT 1 cut(s) 719
AjnI CCWGG 1 cut(s) 49
AjuI GAANNNNNNNTTGG 2 cut(s) 998, 1030
AloI GAACNNNNNNTCC 2 cut(s) 448, 480
AluBI AGCT 3 cut(s) 22, 1144, 1176
AluI AGCT 3 cut(s) 22, 1144, 1176
Alw26I GTCTC 1 cut(s) 506
AlwI GGATC 3 cut(s) 175, 345, 827
Aor13HI TCCGGA 1 cut(s) 964
AoxI GGCC 4 cut(s) 166, 344, 951, 1121
ApeKI GCWGC 1 cut(s) 611
ApoI RAATTY 3 cut(s) 146, 685, 982
Asp700I GAANNNNTTC 3 cut(s) 324, 1075, 1145
AspLEI GCGC 2 cut(s) 593, 1105
AspS9I GGNCC 2 cut(s) 204, 344
AsuC2I CCSGG 1 cut(s) 635
AsuHPI GGTGA 2 cut(s) 65, 350
AsuII TTCGAA 1 cut(s) 980
AvaII GGWCC 1 cut(s) 204
AxyI CCTNAGG 1 cut(s) 393
BalI TGGCCA 2 cut(s) 168, 953
BanI GGYRCC 1 cut(s) 1102
BarI GAAGNNNNNNTAC 2 cut(s) 870, 902
BbvCI CCTCAGC 1 cut(s) 819
BbvI GCAGC 1 cut(s) 598
BccI CCATC 2 cut(s) 68, 1093
BceAI ACGGC 1 cut(s) 330
BciT130I CCWGG 1 cut(s) 51
BclI TGATCA 1 cut(s) 355
BcnI CCSGG 1 cut(s) 635
BcoDI GTCTC 1 cut(s) 506
BcuI ACTAGT 1 cut(s) 719
BfaI CTAG 2 cut(s) 615, 720
BfmI CTRYAG 1 cut(s) 1094
BfoI RGCGCY 1 cut(s) 1106
BisI GCNGC 3 cut(s) 121, 589, 612
BlsI GCNGC 3 cut(s) 122, 590, 613
BmcAI AGTACT 1 cut(s) 996
Bme1390I CCNGG 2 cut(s) 51, 635
Bme18I GGWCC 1 cut(s) 204
BmgT120I GGNCC 2 cut(s) 204, 344
BmiI GGNNCC 2 cut(s) 205, 1104
BmrFI CCNGG 2 cut(s) 51, 635
BmsI GCATC 1 cut(s) 184
Bpu10I CCTNAGC 1 cut(s) 819
Bpu14I TTCGAA 1 cut(s) 980
BpuEI CTTGAG 1 cut(s) 496
BpuMI CCSGG 1 cut(s) 635
Bsa29I ATCGAT 1 cut(s) 405
BsaBI GATNNNNATC 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 1103
BsaWI WCCGGW 1 cut(s) 964
Bsc4I CCNNNNNNNGG 5 cut(s) 382, 971, 1016, 1065, 1137
Bse1I ACTGG 1 cut(s) 169
Bse21I CCTNAGG 1 cut(s) 393
Bse3DI GCAATG 1 cut(s) 1119
Bse8I GATNNNNATC 1 cut(s) 336
BseAI TCCGGA 1 cut(s) 964
BseBI CCWGG 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 405
BseGI GGATG 2 cut(s) 372, 537
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 5 cut(s) 382, 971, 1016, 1065, 1137
BseMI GCAATG 1 cut(s) 1119
BseMII CTCAG 5 cut(s) 26, 407, 517, 810, 1191
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 2 cut(s) 14, 913
BseXI GCAGC 1 cut(s) 598
Bsh1236I CGCG 1 cut(s) 591
BshFI GGCC 4 cut(s) 168, 346, 953, 1123
BshNI GGYRCC 1 cut(s) 1102
BshVI ATCGAT 1 cut(s) 405
BsiSI CCGG 2 cut(s) 635, 965
BslFI GGGAC 3 cut(s) 469, 617, 730
BslI CCNNNNNNNGG 5 cut(s) 382, 971, 1016, 1065, 1137
BsmAI GTCTC 1 cut(s) 506
BsmFI GGGAC 3 cut(s) 469, 617, 730
BsmI GAATGC 1 cut(s) 672
BsnI GGCC 4 cut(s) 168, 346, 953, 1123
Bsp119I TTCGAA 1 cut(s) 980
Bsp13I TCCGGA 1 cut(s) 964
Bsp1407I TGTACA 1 cut(s) 886
Bsp143I GATC 7 cut(s) 180, 213, 337, 355, 402, 563, 832
BspACI CCGC 6 cut(s) 121, 271, 296, 317, 589, 857
BspANI GGCC 4 cut(s) 168, 346, 953, 1123
BspCNI CTCAG 5 cut(s) 25, 406, 516, 811, 1190
BspDI ATCGAT 1 cut(s) 405
BspEI TCCGGA 1 cut(s) 964
BspFNI CGCG 1 cut(s) 591
BspLI GGNNCC 2 cut(s) 205, 1104
BspMAI CTGCAG 1 cut(s) 1098
BspPI GGATC 3 cut(s) 175, 345, 827
BspT104I TTCGAA 1 cut(s) 980
BspT107I GGYRCC 1 cut(s) 1102
BsrDI GCAATG 1 cut(s) 1119
BsrGI TGTACA 1 cut(s) 886
BsrI ACTGG 1 cut(s) 169
BssMI GATC 7 cut(s) 180, 213, 337, 355, 402, 563, 832
BssNI GRCGYC 1 cut(s) 1103
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 3 cut(s) 382, 418, 1040
Bst6I CTCTTC 1 cut(s) 706
BstACI GRCGYC 1 cut(s) 1103
BstAPI GCANNNNNTGC 1 cut(s) 129
BstAUI TGTACA 1 cut(s) 886
BstBI TTCGAA 1 cut(s) 980
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 7 cut(s) 12, 71, 393, 503, 819, 1172, 1177
BstENI CCTNNNNNAGG 1 cut(s) 1135
BstF5I GGATG 2 cut(s) 372, 537
BstFNI CGCG 1 cut(s) 591
BstH2I RGCGCY 1 cut(s) 1106
BstHHI GCGC 2 cut(s) 593, 1105
BstKTI GATC 7 cut(s) 183, 216, 340, 358, 405, 566, 835
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 7 cut(s) 180, 213, 337, 355, 402, 563, 832
BstMWI GCNNNNNNNGC 4 cut(s) 129, 585, 1102, 1109
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 49, 633
BstSFI CTRYAG 1 cut(s) 1094
BstUI CGCG 1 cut(s) 591
BstV1I GCAGC 1 cut(s) 598
Bsu15I ATCGAT 1 cut(s) 405
Bsu36I CCTNAGG 1 cut(s) 393
BsuRI GGCC 4 cut(s) 168, 346, 953, 1123
BsuTUI ATCGAT 1 cut(s) 405
BtsCI GGATG 2 cut(s) 372, 537
BtsIMutI CAGTG 3 cut(s) 378, 912, 1045
Cac8I GCNNGC 1 cut(s) 296
CfoI GCGC 2 cut(s) 593, 1105
Cfr13I GGNCC 2 cut(s) 204, 344
ClaI ATCGAT 1 cut(s) 405
Csp6I GTAC 4 cut(s) 370, 735, 887, 995
CviAII CATG 4 cut(s) 341, 527, 555, 944
CviQI GTAC 4 cut(s) 370, 735, 887, 995
DdeI CTNAG 7 cut(s) 12, 71, 393, 503, 819, 1172, 1177
DinI GGCGCC 1 cut(s) 1104
DpnI GATC 7 cut(s) 182, 215, 339, 357, 404, 565, 834
DpnII GATC 7 cut(s) 180, 213, 337, 355, 402, 563, 832
DraIII CACNNNGTG 1 cut(s) 382
EaeI YGGCCR 2 cut(s) 166, 951
Eam1104I CTCTTC 1 cut(s) 706
EarI CTCTTC 1 cut(s) 706
EciI GGCGGA 3 cut(s) 286, 332, 872
Eco147I AGGCCT 1 cut(s) 1123
Eco47I GGWCC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 897
Eco81I CCTNAGG 1 cut(s) 393
EcoNI CCTNNNNNAGG 1 cut(s) 1135
EcoO109I RGGNCCY 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 982
EcoRII CCWGG 1 cut(s) 49
EgeI GGCGCC 1 cut(s) 1104
EheI GGCGCC 1 cut(s) 1104
FaeI CATG 4 cut(s) 344, 530, 558, 947
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 3 cut(s) 469, 617, 730
FatI CATG 4 cut(s) 340, 526, 554, 943
FauI CCCGC 1 cut(s) 303
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 3 cut(s) 121, 589, 612
FokI GGATG 2 cut(s) 359, 524
Fsp4HI GCNGC 3 cut(s) 121, 589, 612
FspBI CTAG 2 cut(s) 615, 720
GlaI GCGC 2 cut(s) 592, 1104
GluI GCNGC 3 cut(s) 121, 589, 612
HaeII RGCGCY 1 cut(s) 1106
HaeIII GGCC 4 cut(s) 168, 346, 953, 1123
HapII CCGG 2 cut(s) 635, 965
HhaI GCGC 2 cut(s) 593, 1105
Hin1I GRCGYC 1 cut(s) 1103
Hin1II CATG 4 cut(s) 344, 530, 558, 947
Hin6I GCGC 2 cut(s) 591, 1103
HinP1I GCGC 2 cut(s) 591, 1103
HindIII AAGCTT 1 cut(s) 1142
HinfI GANTC 8 cut(s) 113, 301, 407, 499, 638, 917, 1006, 1168
HpaII CCGG 2 cut(s) 635, 965
HphI GGTGA 2 cut(s) 65, 350
Hpy166II GTNNAC 2 cut(s) 68, 157
Hpy188I TCNGA 5 cut(s) 15, 180, 597, 832, 1029
Hpy188III TCNNGA 3 cut(s) 329, 933, 965
Hpy8I GTNNAC 2 cut(s) 68, 157
HpyAV CCTTC 3 cut(s) 695, 1158, 1193
HpyCH4III ACNGT 3 cut(s) 382, 418, 1040
HpyCH4V TGCA 4 cut(s) 248, 758, 1043, 1096
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 585, 1102, 1109
HpyF3I CTNAG 7 cut(s) 12, 71, 393, 503, 819, 1172, 1177
Hsp92I GRCGYC 1 cut(s) 1103
Hsp92II CATG 4 cut(s) 344, 530, 558, 947
HspAI GCGC 2 cut(s) 591, 1103
KasI GGCGCC 1 cut(s) 1102
Kpn2I TCCGGA 1 cut(s) 964
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 7 cut(s) 180, 213, 337, 355, 402, 563, 832
LmnI GCTCC 2 cut(s) 27, 598
Lsp1109I GCAGC 1 cut(s) 598
LweI GCATC 1 cut(s) 184
MaeI CTAG 2 cut(s) 615, 720
MaeIII GTNAC 2 cut(s) 77, 871
MalI GATC 7 cut(s) 182, 215, 339, 357, 404, 565, 834
MboI GATC 7 cut(s) 180, 213, 337, 355, 402, 563, 832
MboII GAAGA 5 cut(s) 332, 503, 723, 890, 1068
MlsI TGGCCA 2 cut(s) 168, 953
MluCI AATT 8 cut(s) 146, 249, 574, 685, 759, 805, 982, 989
MluNI TGGCCA 2 cut(s) 168, 953
Mly113I GGCGCC 1 cut(s) 1103
MlyI GAGTC 2 cut(s) 508, 1162
MmeI TCCRAC 1 cut(s) 709
Mox20I TGGCCA 2 cut(s) 168, 953
MroI TCCGGA 1 cut(s) 964
MroXI GAANNNNTTC 3 cut(s) 324, 1075, 1145
MscI TGGCCA 2 cut(s) 168, 953
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 677
Msp20I TGGCCA 2 cut(s) 168, 953
MspI CCGG 2 cut(s) 635, 965
MspR9I CCNGG 2 cut(s) 51, 635
Mva1269I GAATGC 1 cut(s) 672
MvaI CCWGG 1 cut(s) 51
MvnI CGCG 1 cut(s) 591
MwoI GCNNNNNNNGC 4 cut(s) 129, 585, 1102, 1109
NarI GGCGCC 1 cut(s) 1103
NciI CCSGG 1 cut(s) 635
NdeII GATC 7 cut(s) 180, 213, 337, 355, 402, 563, 832
NlaIII CATG 4 cut(s) 344, 530, 558, 947
NlaIV GGNNCC 2 cut(s) 205, 1104
NmuCI GTSAC 2 cut(s) 77, 871
NspV TTCGAA 1 cut(s) 980
PceI AGGCCT 1 cut(s) 1123
PctI GAATGC 1 cut(s) 672
PdmI GAANNNNTTC 3 cut(s) 324, 1075, 1145
PfeI GAWTC 6 cut(s) 113, 301, 407, 638, 917, 1006
PflMI CCANNNNNTGG 2 cut(s) 382, 1065
PfoI TCCNGGA 1 cut(s) 633
PkrI GCNGC 3 cut(s) 122, 590, 613
PleI GAGTC 2 cut(s) 507, 1162
PluTI GGCGCC 1 cut(s) 1106
PpsI GAGTC 2 cut(s) 507, 1162
PpuMI RGGWCCY 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 205, 1104
PspPI GGNCC 2 cut(s) 204, 344
PspPPI RGGWCCY 1 cut(s) 204
PstI CTGCAG 1 cut(s) 1098
RsaI GTAC 4 cut(s) 371, 736, 888, 996
RsaNI GTAC 4 cut(s) 370, 735, 887, 995
RseI CAYNNNNRTG 1 cut(s) 677
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 3 cut(s) 121, 589, 612
Sau3AI GATC 7 cut(s) 180, 213, 337, 355, 402, 563, 832
Sau96I GGNCC 2 cut(s) 204, 344
ScaI AGTACT 1 cut(s) 996
SchI GAGTC 2 cut(s) 508, 1162
ScrFI CCNGG 2 cut(s) 51, 635
SetI ASST 8 cut(s) 24, 55, 729, 736, 798, 905, 1146, 1178
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 1094
SfoI GGCGCC 1 cut(s) 1104
SfuI TTCGAA 1 cut(s) 980
SinI GGWCC 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 677
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
SpeI ACTAGT 1 cut(s) 719
Sse9I AATT 8 cut(s) 146, 249, 574, 685, 759, 805, 982, 989
SseBI AGGCCT 1 cut(s) 1123
SsiI CCGC 6 cut(s) 121, 271, 296, 317, 589, 857
SspDI GGCGCC 1 cut(s) 1102
SspMI CTAG 2 cut(s) 615, 720
StuI AGGCCT 1 cut(s) 1123
StyD4I CCNGG 2 cut(s) 49, 633
TaaI ACNGT 3 cut(s) 382, 418, 1040
TaqI TCGA 5 cut(s) 266, 405, 641, 980, 1154
TasI AATT 8 cut(s) 146, 249, 574, 685, 759, 805, 982, 989
TatI WGTACW 2 cut(s) 886, 994
TauI GCSGC 2 cut(s) 123, 591
TfiI GAWTC 6 cut(s) 113, 301, 407, 638, 917, 1006
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 3 cut(s) 385, 912, 1045
TseFI GTSAC 2 cut(s) 77, 871
TseI GCWGC 1 cut(s) 611
Tsp45I GTSAC 2 cut(s) 77, 871
TspDTI ATGAA 1 cut(s) 1130
TspGWI ACGGA 2 cut(s) 301, 473
TspRI CASTG 3 cut(s) 385, 912, 1045
Van91I CCANNNNNTGG 2 cut(s) 382, 1065
VpaK11BI GGWCC 1 cut(s) 204
XagI CCTNNNNNAGG 1 cut(s) 1135
XapI RAATTY 3 cut(s) 146, 685, 982
XmnI GAANNNNTTC 3 cut(s) 324, 1075, 1145
XspI CTAG 2 cut(s) 615, 720
ZrmI AGTACT 1 cut(s) 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.