RLG00000017962

RING-H2 finger protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
23750089 .. 23752544
2456 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017962

Sequence Viewer

Length: 1335 bp
ATGCCTCAGTCTGCGACGCAGACCAAGGAATCTCCAAAAGCAACAATCTTTCTTTCGCTTTCTCGTAAACAAGGAAACATCTTTAACGATCCAGGTGAAGCCTTCTGTAAACCTAGTTGTGACCCAAATCTAAATAAACAAGGCTTGTGTTGTGAATCTTGCCTCAAAATCTGCCCAAAAGTCTGTAAATTTTCTGTAGGTGATGGTGATAATCTTCCACCACCAAATTTACCAACTTTGTTTCACTCACCTCCACTACTACCGCCGCCGCCGCCTGAGGTGGTTGAGACTACACCAGGCTATCCTAGCCAGAAGCATCTGATCCAAACGAGTATGATAGTTGGGTCCTGTATGATCGGGGCTTCTCTTTTTCTCTGTATTGTTTTTGCAATTATGAGATACTATTCGAGGCGGGGAAATCCCAGAAGGAGAAGCCCGCCGATTCTGTTTGCTACCGCTGAAGATTTTCTTGATGAGGATCATGGGCCTGTGCTTGATCACCCCATTTGGTACATCCACACTGTGGGTCTCTCTCAGTCTTTGATCGATTCCATTACAGTTTGTAAGTATAGAAAAGATGAGGGTTTGATTGAGGGGACGGATTGTTCTGTTTGCTTGAGTGAGTTTGTGGAAAATGAGAGTCTCAGGCTTTTGCCAAAGTGTAGTCATGCTTTTCACATCCCTTGTATTGATACATGGTTGAGATCACATAAGAATTGCCCTCTTTGCCGCGCTCCGATTGTTTGTGGTGCTGCTAGTGATCAAGTCGGTGTCCCGGATTCAGTTGCGAGTGGTTCGGGTTCTGGGGAGAGCATTCGGGTGGAGAATTTGGAGAGTGATGAACGGATTGGAAGAGGGACTAGTGAGGTTGGAGGTACAGATGATGAGAATGTCAGTGCAATTTCTATTGATGGATGGAGTGTTGAAAATTCAAAGGTCTTGCCCAATTCTATTTTGGCTGAGGGAAGTTCTGATCCAAGAGCATTGAGCGATTTGGCGGATAATAGACGAGTGACTGAAGATGATGTACAACCAATGAGGAGGTCAGTGTCGGTGGATTCAGTGTCTGCTACAAGAATATATAATGCTGTGGCCAATGCTATTCCAGAACAAGGAAGTTCGAATTCCCAATTAGTACTTGTGAAGAATCCAAAGCTGGGGATTGTTCCGAAGCAGGACAGTGCAAGTTCTAGCCTATCCAAGCATTGGAGAAGTTCTTCAAATGTTCTTTCTCTGCAGATGGTGCCAATGGCAATGAAAAGGCCTTTCCCCTCTGGCAGGAAGCTTTTCTCATCGAAACACAGAAGGACTCTTAGCTCAATCCTTCCCTTATGA

Protein Analysis

445

Amino Acids

48.27

Weight (kDa)

6.79

Isoelectric Point (pI)

59.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 201 - 244 1.3e-13 Ring finger domain
zf-RING_11 PF17123 201 - 230 2.2e-10 RING-like zinc finger
zf-C3HC4 PF00097 202 - 243 1.6e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 202 - 243 2.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 214 - 244 2.1e-08 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012774)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1243
AccB7I CCANNNNNTGG 2 cut(s) 523, 1206
AccII CGCG 1 cut(s) 732
AciI CCGC 9 cut(s) 263, 266, 269, 272, 412, 437, 456, 730, 998
AclWI GGATC 4 cut(s) 83, 316, 486, 968
AcoI YGGCCR 1 cut(s) 1092
AcsI RAATTY 5 cut(s) 188, 226, 826, 928, 1123
AcuI CTGAAG 2 cut(s) 480, 1038
AdeI CACNNNGTG 1 cut(s) 523
AfaI GTAC 4 cut(s) 512, 877, 1029, 1137
AfiI CCNNNNNNNGG 5 cut(s) 523, 1112, 1157, 1206, 1278
AgsI TTSAA 3 cut(s) 926, 933, 1221
AhlI ACTAGT 1 cut(s) 860
AjnI CCWGG 2 cut(s) 91, 295
AloI GAACNNNNNNTCC 2 cut(s) 589, 621
AluBI AGCT 3 cut(s) 1156, 1285, 1317
AluI AGCT 3 cut(s) 1156, 1285, 1317
Alw26I GTCTC 3 cut(s) 281, 533, 647
AlwI GGATC 4 cut(s) 83, 316, 486, 968
AlwNI CAGNNNCTG 1 cut(s) 1067
AoxI GGCC 3 cut(s) 485, 1092, 1262
ApeKI GCWGC 1 cut(s) 752
ApoI RAATTY 5 cut(s) 188, 226, 826, 928, 1123
Asp700I GAANNNNTTC 3 cut(s) 465, 1216, 1286
AspLEI GCGC 1 cut(s) 734
AspS9I GGNCC 2 cut(s) 345, 485
AsuC2I CCSGG 1 cut(s) 776
AsuHPI GGTGA 5 cut(s) 107, 212, 218, 240, 491
AsuII TTCGAA 1 cut(s) 1121
AvaII GGWCC 1 cut(s) 345
AxyI CCTNAGG 1 cut(s) 276
BalI TGGCCA 1 cut(s) 1094
BanI GGYRCC 1 cut(s) 1243
BarI GAAGNNNNNNTAC 2 cut(s) 1011, 1043
BbvCI CCTCAGC 1 cut(s) 960
BbvI GCAGC 1 cut(s) 739
BccI CCATC 4 cut(s) 197, 905, 909, 1234
BciT130I CCWGG 2 cut(s) 93, 297
BclI TGATCA 2 cut(s) 496, 760
BcnI CCSGG 1 cut(s) 776
BcoDI GTCTC 3 cut(s) 281, 533, 647
BcuI ACTAGT 1 cut(s) 860
BfaI CTAG 5 cut(s) 114, 306, 756, 861, 1191
BfmI CTRYAG 2 cut(s) 195, 1235
BisI GCNGC 5 cut(s) 266, 269, 272, 730, 753
BlsI GCNGC 5 cut(s) 267, 270, 273, 731, 754
BmcAI AGTACT 1 cut(s) 1137
Bme1390I CCNGG 3 cut(s) 93, 297, 776
Bme18I GGWCC 1 cut(s) 345
BmgT120I GGNCC 2 cut(s) 345, 485
BmiI GGNNCC 2 cut(s) 346, 1245
BmrFI CCNGG 3 cut(s) 93, 297, 776
BmsI GCATC 1 cut(s) 325
Bpu10I CCTNAGC 1 cut(s) 960
Bpu14I TTCGAA 1 cut(s) 1121
BpuEI CTTGAG 1 cut(s) 637
BpuMI CCSGG 1 cut(s) 776
Bsa29I ATCGAT 1 cut(s) 546
BsaBI GATNNNNATC 1 cut(s) 477
BsaI GGTCTC 1 cut(s) 533
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 5 cut(s) 523, 1112, 1157, 1206, 1278
Bse21I CCTNAGG 1 cut(s) 276
Bse3DI GCAATG 1 cut(s) 1260
Bse8I GATNNNNATC 1 cut(s) 477
BseBI CCWGG 2 cut(s) 93, 297
BseCI ATCGAT 1 cut(s) 546
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 3 cut(s) 513, 678, 920
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 5 cut(s) 523, 1112, 1157, 1206, 1278
BseMI GCAATG 1 cut(s) 1260
BseMII CTCAG 5 cut(s) 20, 267, 548, 658, 951
BseRI GAGGAG 1 cut(s) 1054
BseXI GCAGC 1 cut(s) 739
BseYI CCCAGC 1 cut(s) 1156
Bsh1236I CGCG 1 cut(s) 732
BshFI GGCC 3 cut(s) 487, 1094, 1264
BshNI GGYRCC 1 cut(s) 1243
BshVI ATCGAT 1 cut(s) 546
BsiSI CCGG 1 cut(s) 776
BslFI GGGAC 3 cut(s) 610, 758, 871
BslI CCNNNNNNNGG 5 cut(s) 523, 1112, 1157, 1206, 1278
BsmAI GTCTC 3 cut(s) 281, 533, 647
BsmFI GGGAC 3 cut(s) 610, 758, 871
BsmI GAATGC 1 cut(s) 813
BsnI GGCC 3 cut(s) 487, 1094, 1264
Bso31I GGTCTC 1 cut(s) 533
Bsp119I TTCGAA 1 cut(s) 1121
Bsp1407I TGTACA 1 cut(s) 1027
Bsp143I GATC 9 cut(s) 88, 321, 354, 478, 496, 543, 704, 760, 973
BspACI CCGC 9 cut(s) 263, 266, 269, 272, 412, 437, 456, 730, 998
BspANI GGCC 3 cut(s) 487, 1094, 1264
BspCNI CTCAG 5 cut(s) 19, 268, 547, 657, 952
BspDI ATCGAT 1 cut(s) 546
BspFNI CGCG 1 cut(s) 732
BspLI GGNNCC 2 cut(s) 346, 1245
BspMAI CTGCAG 1 cut(s) 1239
BspPI GGATC 4 cut(s) 83, 316, 486, 968
BspT104I TTCGAA 1 cut(s) 1121
BspT107I GGYRCC 1 cut(s) 1243
BspTNI GGTCTC 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 1260
BsrGI TGTACA 1 cut(s) 1027
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 9 cut(s) 88, 321, 354, 478, 496, 543, 704, 760, 973
BssT1I CCWWGG 1 cut(s) 24
Bst2UI CCWGG 2 cut(s) 93, 297
Bst4CI ACNGT 3 cut(s) 523, 559, 1181
Bst6I CTCTTC 1 cut(s) 847
BstAPI GCANNNNNTGC 1 cut(s) 1243
BstAUI TGTACA 1 cut(s) 1027
BstBI TTCGAA 1 cut(s) 1121
BstC8I GCNNGC 1 cut(s) 437
BstDEI CTNAG 6 cut(s) 6, 276, 534, 644, 960, 1313
BstENI CCTNNNNNAGG 1 cut(s) 1276
BstF5I GGATG 3 cut(s) 513, 678, 920
BstFNI CGCG 1 cut(s) 732
BstHHI GCGC 1 cut(s) 734
BstKTI GATC 9 cut(s) 91, 324, 357, 481, 499, 546, 707, 763, 976
BstMAI GTCTC 3 cut(s) 281, 533, 647
BstMBI GATC 9 cut(s) 88, 321, 354, 478, 496, 543, 704, 760, 973
BstMWI GCNNNNNNNGC 4 cut(s) 271, 306, 726, 1243
BstNI CCWGG 2 cut(s) 93, 297
BstSCI CCNGG 3 cut(s) 91, 295, 774
BstSFI CTRYAG 2 cut(s) 195, 1235
BstUI CGCG 1 cut(s) 732
BstV1I GCAGC 1 cut(s) 739
Bsu15I ATCGAT 1 cut(s) 546
Bsu36I CCTNAGG 1 cut(s) 276
BsuRI GGCC 3 cut(s) 487, 1094, 1264
BsuTUI ATCGAT 1 cut(s) 546
BtsCI GGATG 3 cut(s) 513, 678, 920
BtsIMutI CAGTG 5 cut(s) 519, 901, 1053, 1068, 1186
Cac8I GCNNGC 1 cut(s) 437
CaiI CAGNNNCTG 1 cut(s) 1067
CfoI GCGC 1 cut(s) 734
Cfr13I GGNCC 2 cut(s) 345, 485
ClaI ATCGAT 1 cut(s) 546
CseI GACGC 1 cut(s) 25
Csp6I GTAC 4 cut(s) 511, 876, 1028, 1136
CviAII CATG 3 cut(s) 482, 668, 696
CviQI GTAC 4 cut(s) 511, 876, 1028, 1136
DdeI CTNAG 6 cut(s) 6, 276, 534, 644, 960, 1313
DpnI GATC 9 cut(s) 90, 323, 356, 480, 498, 545, 706, 762, 975
DpnII GATC 9 cut(s) 88, 321, 354, 478, 496, 543, 704, 760, 973
DraIII CACNNNGTG 1 cut(s) 523
EaeI YGGCCR 1 cut(s) 1092
Eam1104I CTCTTC 1 cut(s) 847
EarI CTCTTC 1 cut(s) 847
EciI GGCGGA 1 cut(s) 1013
Eco130I CCWWGG 1 cut(s) 24
Eco147I AGGCCT 1 cut(s) 1264
Eco31I GGTCTC 1 cut(s) 533
Eco47I GGWCC 1 cut(s) 345
Eco57I CTGAAG 2 cut(s) 480, 1038
Eco81I CCTNAGG 1 cut(s) 276
EcoNI CCTNNNNNAGG 1 cut(s) 1276
EcoO109I RGGNCCY 1 cut(s) 345
EcoRI GAATTC 1 cut(s) 1123
EcoRII CCWGG 2 cut(s) 91, 295
EcoT14I CCWWGG 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 3 cut(s) 485, 671, 699
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 3 cut(s) 610, 758, 871
FatI CATG 3 cut(s) 481, 667, 695
FauI CCCGC 2 cut(s) 405, 444
FbaI TGATCA 2 cut(s) 496, 760
Fnu4HI GCNGC 5 cut(s) 266, 269, 272, 730, 753
FokI GGATG 3 cut(s) 500, 665, 927
Fsp4HI GCNGC 5 cut(s) 266, 269, 272, 730, 753
FspBI CTAG 5 cut(s) 114, 306, 756, 861, 1191
GlaI GCGC 1 cut(s) 733
GluI GCNGC 5 cut(s) 266, 269, 272, 730, 753
GsaI CCCAGC 1 cut(s) 1160
HaeIII GGCC 3 cut(s) 487, 1094, 1264
HapII CCGG 1 cut(s) 776
HgaI GACGC 1 cut(s) 25
HhaI GCGC 1 cut(s) 734
Hin1II CATG 3 cut(s) 485, 671, 699
Hin6I GCGC 1 cut(s) 732
HinP1I GCGC 1 cut(s) 732
HindIII AAGCTT 1 cut(s) 1283
HinfI GANTC 9 cut(s) 29, 155, 442, 548, 640, 779, 1058, 1147, 1309
HpaII CCGG 1 cut(s) 776
HphI GGTGA 5 cut(s) 107, 212, 218, 240, 491
Hpy166II GTNNAC 2 cut(s) 68, 110
Hpy188I TCNGA 4 cut(s) 321, 738, 973, 1170
Hpy188III TCNNGA 2 cut(s) 470, 1106
Hpy8I GTNNAC 2 cut(s) 68, 110
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 4 cut(s) 112, 420, 1299, 1334
HpyCH4III ACNGT 3 cut(s) 523, 559, 1181
HpyCH4V TGCA 4 cut(s) 389, 899, 1184, 1237
HpyF10VI GCNNNNNNNGC 4 cut(s) 271, 306, 726, 1243
HpyF3I CTNAG 6 cut(s) 6, 276, 534, 644, 960, 1313
Hsp92II CATG 3 cut(s) 485, 671, 699
HspAI GCGC 1 cut(s) 732
Ksp22I TGATCA 2 cut(s) 496, 760
Kzo9I GATC 9 cut(s) 88, 321, 354, 478, 496, 543, 704, 760, 973
LmnI GCTCC 1 cut(s) 739
Lsp1109I GCAGC 1 cut(s) 739
LweI GCATC 1 cut(s) 325
MaeI CTAG 5 cut(s) 114, 306, 756, 861, 1191
MaeIII GTNAC 2 cut(s) 119, 1012
MalI GATC 9 cut(s) 90, 323, 356, 480, 498, 545, 706, 762, 975
MboI GATC 9 cut(s) 88, 321, 354, 478, 496, 543, 704, 760, 973
MboII GAAGA 6 cut(s) 206, 473, 864, 1031, 1156, 1209
MlsI TGGCCA 1 cut(s) 1094
MluNI TGGCCA 1 cut(s) 1094
MlyI GAGTC 2 cut(s) 649, 1303
MmeI TCCRAC 1 cut(s) 850
Mox20I TGGCCA 1 cut(s) 1094
MroXI GAANNNNTTC 3 cut(s) 465, 1216, 1286
MscI TGGCCA 1 cut(s) 1094
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 818
Msp20I TGGCCA 1 cut(s) 1094
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 1 cut(s) 776
MspR9I CCNGG 3 cut(s) 93, 297, 776
Mva1269I GAATGC 1 cut(s) 813
MvaI CCWGG 2 cut(s) 93, 297
MvnI CGCG 1 cut(s) 732
MwoI GCNNNNNNNGC 4 cut(s) 271, 306, 726, 1243
NciI CCSGG 1 cut(s) 776
NdeII GATC 9 cut(s) 88, 321, 354, 478, 496, 543, 704, 760, 973
NlaIII CATG 3 cut(s) 485, 671, 699
NlaIV GGNNCC 2 cut(s) 346, 1245
NmuCI GTSAC 2 cut(s) 119, 1012
NspV TTCGAA 1 cut(s) 1121
PceI AGGCCT 1 cut(s) 1264
PctI GAATGC 1 cut(s) 813
PdmI GAANNNNTTC 3 cut(s) 465, 1216, 1286
PfeI GAWTC 7 cut(s) 29, 155, 442, 548, 779, 1058, 1147
PflMI CCANNNNNTGG 2 cut(s) 523, 1206
PfoI TCCNGGA 1 cut(s) 774
PkrI GCNGC 5 cut(s) 267, 270, 273, 731, 754
PleI GAGTC 2 cut(s) 648, 1303
PpsI GAGTC 2 cut(s) 648, 1303
PpuMI RGGWCCY 1 cut(s) 345
Psp5II RGGWCCY 1 cut(s) 345
Psp6I CCWGG 2 cut(s) 91, 295
PspFI CCCAGC 1 cut(s) 1156
PspGI CCWGG 2 cut(s) 91, 295
PspN4I GGNNCC 2 cut(s) 346, 1245
PspPI GGNCC 2 cut(s) 345, 485
PspPPI RGGWCCY 1 cut(s) 345
PstI CTGCAG 1 cut(s) 1239
PstNI CAGNNNCTG 1 cut(s) 1067
RsaI GTAC 4 cut(s) 512, 877, 1029, 1137
RsaNI GTAC 4 cut(s) 511, 876, 1028, 1136
RseI CAYNNNNRTG 1 cut(s) 818
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 5 cut(s) 266, 269, 272, 730, 753
Sau3AI GATC 9 cut(s) 88, 321, 354, 478, 496, 543, 704, 760, 973
Sau96I GGNCC 2 cut(s) 345, 485
ScaI AGTACT 1 cut(s) 1137
SchI GAGTC 2 cut(s) 649, 1303
ScrFI CCNGG 3 cut(s) 93, 297, 776
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 2 cut(s) 195, 1235
SfuI TTCGAA 1 cut(s) 1121
SinI GGWCC 1 cut(s) 345
SmiMI CAYNNNNRTG 1 cut(s) 818
SmlI CTYRAG 1 cut(s) 616
SmoI CTYRAG 1 cut(s) 616
SpeI ACTAGT 1 cut(s) 860
SseBI AGGCCT 1 cut(s) 1264
SsiI CCGC 9 cut(s) 263, 266, 269, 272, 412, 437, 456, 730, 998
SspMI CTAG 5 cut(s) 114, 306, 756, 861, 1191
StuI AGGCCT 1 cut(s) 1264
StyD4I CCNGG 3 cut(s) 91, 295, 774
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 3 cut(s) 523, 559, 1181
TaqI TCGA 4 cut(s) 407, 546, 1121, 1295
TatI WGTACW 2 cut(s) 1027, 1135
TauI GCSGC 4 cut(s) 268, 271, 274, 732
TfiI GAWTC 7 cut(s) 29, 155, 442, 548, 779, 1058, 1147
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 5 cut(s) 526, 901, 1053, 1068, 1186
TseFI GTSAC 2 cut(s) 119, 1012
TseI GCWGC 1 cut(s) 752
Tsp45I GTSAC 2 cut(s) 119, 1012
TspDTI ATGAA 2 cut(s) 855, 1271
TspGWI ACGGA 2 cut(s) 614, 859
TspRI CASTG 5 cut(s) 526, 901, 1053, 1068, 1186
Van91I CCANNNNNTGG 2 cut(s) 523, 1206
VpaK11BI GGWCC 1 cut(s) 345
XagI CCTNNNNNAGG 1 cut(s) 1276
XapI RAATTY 5 cut(s) 188, 226, 826, 928, 1123
XcmI CCANNNNNNNNNTGG 1 cut(s) 952
XmnI GAANNNNTTC 3 cut(s) 465, 1216, 1286
XspI CTAG 5 cut(s) 114, 306, 756, 861, 1191
ZrmI AGTACT 1 cut(s) 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.