Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012774

Physical Location & Seq

Genomic Coordinates Forward (+)

20130969 .. 20133075

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G194300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGGGTTTGATCACAGAAAACTCATCCTCCAAACCAATTTCAGTGAGGAAGATTTCTGTCCAATTCAGTGTAAGCAAGCTCCGATCCAGGGGGGTTTCTGTTTTCTTTCTTGTTTCAAAAGATGCCGTGATGTATGTAAGAATCTTATAGTCTATGGTGGTAGTGAACTTCGTCCTCCACTTTTGCCAGACCCTACTCTTCCACCACCACCACCATCACCACCATCACCACCATTACCACCACTGATTGATTATCAGCCCCCATCTGAACAGAAACATATACTTGAAACAAGCATGAAAATTACAGGTTGTATGATTGGGGTTGCTCTTCTTGTTGCTATTGTTTTCTCTATTGTAAGATTTTATTGGCGCCGCAGCAATTCCAGGAGGAGGAGGAGTAGTTCTTTACCAATTTTGTTTGATACCCAACAAGATTTTCTTGATGAAGATCATGGACCTGTTCTTGATCATCCCATTTGGTACATCTACACTGTTGGGCTCCCGCAATCTGTAATTGACTCCATAACAGTCTGCAAGTATAAAAAAGATGAGGGGTTGATTGAAGGAACAGATTGTTCTGTTTGCTTGAGTGAGTTTGAAGAAGATGAGAGTCTTAGGCTTTTGGCCAAGTGCAGTCATGCCTTCCACATCCCTTGTATTGATACCTGGTTGAGATCGCATAAAAATTGCCCTCTTTGCCGCGCTCCAATTGTTTGTGACATTGCTAGGGATCAAGAAAGTGTCCCTGAGCCTATTTCGAGGGATTCAGGTTCGAGGGAAAGCATTGAGGTAGAGAATTTGGAGAATAATGGAGGGGTCGGAAGCCTTGGAAGTGGGACTAGTGAGGTTGGGATTACAGATGATGAGAATGTTTTTGCAATTCCAACTGAGGGAAGAACTGCTGAAAATTCAGGAAAGGTTTTGCCAAGTTCTACTGTGGCTGCTGGTAGTCGTGATCCAAGAGCATTAAGTGATTTGACTGACAATCGCCGTGTTACTGAAGAGGACATACAACCAATTAGGAGGTCAGTTTCGATGGATTCGTCATCTGCTTCGCGAATATACCGTGATGTGGCCAATGTCATTCCTGAAGAAGGAAGTTCAAATTCCCAATTAGTACATGTTAAGAATCCGAATTCGGGGATTGTTTCCAAGTATGGCAGTTCAAGTTCTAGCCTTGCCAAGCTAATGAGGAGTTCTTCAATTGGGTTTTCTCTGCAGATGGGGCCAATATCAATGAAAAGGCCTTTCTCATCTGGCAGGAAGTTTTTCTCATCCAAACATGGAAGGAGTCAAAGCTCAATCCTTCCGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

439

Amino Acids

48.25

Weight (kDa)

6.18

Isoelectric Point (pI)

71.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10380
fragaria_vesca	FvH4_1g20164
malus_domestica	MD01G1036900.v1.1 MD15G1317400.v1.1
prunus_persica	Prupe.6G194300_v2.0.a1
pyrus_communis	pycom01g06390 pycom15g27980
rosa_chinensis	RchiOBHm_Chr2g0112241
rosa_laevigata	RLG00000017962
rosa_multiflora	Rmu_co8477273.1_g000001 Rmu_sc0001386.1_g000026
rosa_roxburghii	Rroxscaffold_2G00131620
rosa_rugosa	Rorug02G0179300
rosa_samantha	Rh2AG231700 Rh2BG245200 Rh2CG236100 Rh2DG239600
rosa_wichuraiana	Rw2G017980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	369
AccII	CGCG	2 cut(s)	702, 1057
AciI	CCGC	3 cut(s)	373, 503, 700
AclWI	GGATC	3 cut(s)	79, 738, 950
AcoI	YGGCCR	2 cut(s)	624, 1074
AcsI	RAATTY	4 cut(s)	796, 907, 1105, 1135
AcuI	CTGAAG	2 cut(s)	1020, 1110
AcyI	GRCGYC	1 cut(s)	370
AfaI	GTAC	2 cut(s)	482, 1119
AfiI	CCNNNNNNNGG	6 cut(s)	89, 390, 890, 1072, 1094, 1139
AflIII	ACRYGT	1 cut(s)	1120
AgsI	TTSAA	7 cut(s)	118, 287, 563, 599, 1104, 1167, 1203
AhlI	ACTAGT	1 cut(s)	839
AjnI	CCWGG	3 cut(s)	87, 383, 665
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AloI	GAACNNNNNNTCC	2 cut(s)	385, 417
AluBI	AGCT	3 cut(s)	80, 1186, 1299
AluI	AGCT	3 cut(s)	80, 1186, 1299
AlwI	GGATC	3 cut(s)	79, 738, 950
AoxI	GGCC	4 cut(s)	624, 1074, 1226, 1244
ApeKI	GCWGC	2 cut(s)	375, 941
ApoI	RAATTY	4 cut(s)	796, 907, 1105, 1135
Asp700I	GAANNNNTTC	1 cut(s)	1268
AspLEI	GCGC	2 cut(s)	372, 704
AspS9I	GGNCC	2 cut(s)	455, 1226
AsuHPI	GGTGA	2 cut(s)	210, 219
AvaII	GGWCC	1 cut(s)	455
BalI	TGGCCA	2 cut(s)	626, 1076
BanI	GGYRCC	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	501
BarI	GAAGNNNNNNTAC	2 cut(s)	993, 1025
BbvI	GCAGC	2 cut(s)	387, 928
BccI	CCATC	5 cut(s)	223, 232, 271, 1030, 1216
BceAI	ACGGC	2 cut(s)	111, 975
BciT130I	CCWGG	3 cut(s)	89, 385, 667
BclI	TGATCA	2 cut(s)	10, 466
BcuI	ACTAGT	1 cut(s)	839
BfaI	CTAG	3 cut(s)	726, 840, 1173
BfmI	CTRYAG	1 cut(s)	1217
BfoI	RGCGCY	1 cut(s)	373
BisI	GCNGC	4 cut(s)	373, 376, 700, 942
BlsI	GCNGC	4 cut(s)	374, 377, 701, 943
Bme1390I	CCNGG	3 cut(s)	89, 385, 667
Bme18I	GGWCC	1 cut(s)	455
BmgT120I	GGNCC	2 cut(s)	455, 1226
BmiI	GGNNCC	3 cut(s)	371, 500, 1227
BmrFI	CCNGG	3 cut(s)	89, 385, 667
BmsI	GCATC	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	607
BsaBI	GATNNNNATC	1 cut(s)	447
BsaHI	GRCGYC	1 cut(s)	370
BsaJI	CCNNGG	2 cut(s)	88, 826
BsaXI	ACNNNNNCTCC	6 cut(s)	12, 42, 382, 385, 412, 415
Bsc4I	CCNNNNNNNGG	6 cut(s)	89, 390, 890, 1072, 1094, 1139
Bse3DI	GCAATG	1 cut(s)	720
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	3 cut(s)	89, 385, 667
BseDI	CCNNGG	2 cut(s)	88, 826
BseGI	GGATG	4 cut(s)	24, 469, 648, 1274
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	6 cut(s)	89, 390, 890, 1072, 1094, 1139
BseMI	GCAATG	1 cut(s)	720
BseMII	CTCAG	2 cut(s)	738, 879
BseRI	GAGGAG	4 cut(s)	403, 406, 409, 1207
BseXI	GCAGC	2 cut(s)	387, 928
BsgI	GTGCAG	1 cut(s)	652
Bsh1236I	CGCG	2 cut(s)	702, 1057
BshFI	GGCC	4 cut(s)	626, 1076, 1228, 1246
BshNI	GGYRCC	1 cut(s)	369
BslFI	GGGAC	2 cut(s)	728, 850
BslI	CCNNNNNNNGG	6 cut(s)	89, 390, 890, 1072, 1094, 1139
BsmFI	GGGAC	2 cut(s)	728, 850
BsnI	GGCC	4 cut(s)	626, 1076, 1228, 1246
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp143I	GATC	7 cut(s)	10, 84, 448, 466, 674, 730, 955
Bsp68I	TCGCGA	1 cut(s)	1057
BspACI	CCGC	3 cut(s)	373, 503, 700
BspANI	GGCC	4 cut(s)	626, 1076, 1228, 1246
BspCNI	CTCAG	2 cut(s)	739, 880
BspFNI	CGCG	2 cut(s)	702, 1057
BspHI	TCATGA	1 cut(s)	1313
BspLI	GGNNCC	3 cut(s)	371, 500, 1227
BspMAI	CTGCAG	1 cut(s)	1221
BspPI	GGATC	3 cut(s)	79, 738, 950
BspQI	GCTCTTC	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	720
BssECI	CCNNGG	2 cut(s)	88, 826
BssMI	GATC	7 cut(s)	10, 84, 448, 466, 674, 730, 955
BssNI	GRCGYC	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	826
Bst2UI	CCWGG	3 cut(s)	89, 385, 667
Bst4CI	ACNGT	4 cut(s)	493, 529, 937, 1067
Bst6I	CTCTTC	3 cut(s)	204, 333, 996
BstACI	GRCGYC	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	3 cut(s)	614, 747, 888
BstENI	CCTNNNNNAGG	1 cut(s)	1092
BstF5I	GGATG	4 cut(s)	24, 469, 648, 1274
BstFNI	CGCG	2 cut(s)	702, 1057
BstH2I	RGCGCY	1 cut(s)	373
BstHHI	GCGC	2 cut(s)	372, 704
BstKTI	GATC	7 cut(s)	13, 87, 451, 469, 677, 733, 958
BstMBI	GATC	7 cut(s)	10, 84, 448, 466, 674, 730, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	696, 1225
BstNI	CCWGG	3 cut(s)	89, 385, 667
BstNSI	RCATGY	1 cut(s)	1124
BstSCI	CCNGG	3 cut(s)	87, 383, 665
BstSFI	CTRYAG	1 cut(s)	1217
BstUI	CGCG	2 cut(s)	702, 1057
BstV1I	GCAGC	2 cut(s)	387, 928
BsuRI	GGCC	4 cut(s)	626, 1076, 1228, 1246
BtsCI	GGATG	4 cut(s)	24, 469, 648, 1274
BtsIMutI	CAGTG	4 cut(s)	49, 74, 242, 489
BtuMI	TCGCGA	1 cut(s)	1057
Cac8I	GCNNGC	1 cut(s)	78
CciI	TCATGA	1 cut(s)	1313
CfoI	GCGC	2 cut(s)	372, 704
Cfr13I	GGNCC	2 cut(s)	455, 1226
CsiI	ACCWGGT	1 cut(s)	665
Csp6I	GTAC	2 cut(s)	481, 1118
CspCI	CAANNNNNGTGG	2 cut(s)	635, 670
CviAII	CATG	6 cut(s)	295, 452, 638, 1121, 1283, 1314
CviQI	GTAC	2 cut(s)	481, 1118
DdeI	CTNAG	3 cut(s)	614, 747, 888
DinI	GGCGCC	1 cut(s)	371
DpnI	GATC	7 cut(s)	12, 86, 450, 468, 676, 732, 957
DpnII	GATC	7 cut(s)	10, 84, 448, 466, 674, 730, 955
EaeI	YGGCCR	2 cut(s)	624, 1074
Eam1104I	CTCTTC	3 cut(s)	204, 333, 996
EarI	CTCTTC	3 cut(s)	204, 333, 996
Eco130I	CCWWGG	1 cut(s)	826
Eco147I	AGGCCT	1 cut(s)	1246
Eco24I	GRGCYC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	455
Eco57I	CTGAAG	2 cut(s)	1020, 1110
EcoNI	CCTNNNNNAGG	1 cut(s)	1092
EcoRI	GAATTC	1 cut(s)	1135
EcoRII	CCWGG	3 cut(s)	87, 383, 665
EcoT14I	CCWWGG	1 cut(s)	826
EcoT38I	GRGCYC	1 cut(s)	501
EgeI	GGCGCC	1 cut(s)	371
EheI	GGCGCC	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	826
FaeI	CATG	6 cut(s)	298, 455, 641, 1124, 1286, 1317
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	2 cut(s)	728, 850
FatI	CATG	6 cut(s)	294, 451, 637, 1120, 1282, 1313
FauI	CCCGC	1 cut(s)	510
FbaI	TGATCA	2 cut(s)	10, 466
Fnu4HI	GCNGC	4 cut(s)	373, 376, 700, 942
FokI	GGATG	4 cut(s)	11, 456, 635, 1261
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	4 cut(s)	373, 376, 700, 942
FspBI	CTAG	3 cut(s)	726, 840, 1173
GlaI	GCGC	2 cut(s)	371, 703
GluI	GCNGC	4 cut(s)	373, 376, 700, 942
HaeII	RGCGCY	1 cut(s)	373
HaeIII	GGCC	4 cut(s)	626, 1076, 1228, 1246
HhaI	GCGC	2 cut(s)	372, 704
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	6 cut(s)	298, 455, 641, 1124, 1286, 1317
Hin6I	GCGC	2 cut(s)	370, 702
HinP1I	GCGC	2 cut(s)	370, 702
HinfI	GANTC	7 cut(s)	142, 518, 610, 764, 1040, 1129, 1291
HphI	GGTGA	2 cut(s)	210, 219
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	4 cut(s)	84, 268, 821, 1134
Hpy188III	TCNNGA	8 cut(s)	440, 464, 734, 912, 953, 1056, 1088, 1314
Hpy8I	GTNNAC	1 cut(s)	167
HpyAV	CCTTC	5 cut(s)	557, 652, 1088, 1281, 1316
HpyCH4III	ACNGT	4 cut(s)	493, 529, 937, 1067
HpyCH4V	TGCA	4 cut(s)	534, 633, 878, 1219
HpyF10VI	GCNNNNNNNGC	2 cut(s)	696, 1225
HpyF3I	CTNAG	3 cut(s)	614, 747, 888
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	6 cut(s)	298, 455, 641, 1124, 1286, 1317
HspAI	GCGC	2 cut(s)	370, 702
KasI	GGCGCC	1 cut(s)	369
Ksp22I	TGATCA	2 cut(s)	10, 466
Kzo9I	GATC	7 cut(s)	10, 84, 448, 466, 674, 730, 955
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	3 cut(s)	85, 504, 709
Lsp1109I	GCAGC	2 cut(s)	387, 928
LweI	GCATC	1 cut(s)	113
MabI	ACCWGGT	1 cut(s)	665
MaeI	CTAG	3 cut(s)	726, 840, 1173
MaeIII	GTNAC	2 cut(s)	716, 994
MalI	GATC	7 cut(s)	12, 86, 450, 468, 676, 732, 957
MboI	GATC	7 cut(s)	10, 84, 448, 466, 674, 730, 955
MfeI	CAATTG	2 cut(s)	708, 1203
MhlI	GDGCHC	1 cut(s)	501
MlsI	TGGCCA	2 cut(s)	626, 1076
MluNI	TGGCCA	2 cut(s)	626, 1076
Mly113I	GGCGCC	1 cut(s)	370
MlyI	GAGTC	3 cut(s)	512, 619, 1300
MmeI	TCCRAC	2 cut(s)	799, 908
Mox20I	TGGCCA	2 cut(s)	626, 1076
MroXI	GAANNNNTTC	1 cut(s)	1268
MscI	TGGCCA	2 cut(s)	626, 1076
MseI	TTAA	2 cut(s)	968, 1125
Msp20I	TGGCCA	2 cut(s)	626, 1076
MspR9I	CCNGG	3 cut(s)	89, 385, 667
MunI	CAATTG	2 cut(s)	708, 1203
MvaI	CCWGG	3 cut(s)	89, 385, 667
MvnI	CGCG	2 cut(s)	702, 1057
MwoI	GCNNNNNNNGC	2 cut(s)	696, 1225
NarI	GGCGCC	1 cut(s)	370
NdeII	GATC	7 cut(s)	10, 84, 448, 466, 674, 730, 955
NlaIII	CATG	6 cut(s)	298, 455, 641, 1124, 1286, 1317
NlaIV	GGNNCC	3 cut(s)	371, 500, 1227
NmuCI	GTSAC	1 cut(s)	716
NruI	TCGCGA	1 cut(s)	1057
NspI	RCATGY	1 cut(s)	1124
PagI	TCATGA	1 cut(s)	1313
PceI	AGGCCT	1 cut(s)	1246
PciI	ACATGT	1 cut(s)	1120
PciSI	GCTCTTC	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	1040
PdmI	GAANNNNTTC	1 cut(s)	1268
PfeI	GAWTC	4 cut(s)	142, 764, 1040, 1129
PfoI	TCCNGGA	1 cut(s)	383
PkrI	GCNGC	4 cut(s)	374, 377, 701, 943
PleI	GAGTC	3 cut(s)	512, 618, 1299
PluTI	GGCGCC	1 cut(s)	373
PpsI	GAGTC	3 cut(s)	512, 618, 1299
PscI	ACATGT	1 cut(s)	1120
Psp6I	CCWGG	3 cut(s)	87, 383, 665
PspGI	CCWGG	3 cut(s)	87, 383, 665
PspN4I	GGNNCC	3 cut(s)	371, 500, 1227
PspPI	GGNCC	2 cut(s)	455, 1226
PstI	CTGCAG	1 cut(s)	1221
RruI	TCGCGA	1 cut(s)	1057
RsaI	GTAC	2 cut(s)	482, 1119
RsaNI	GTAC	2 cut(s)	481, 1118
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	968, 1125
SatI	GCNGC	4 cut(s)	373, 376, 700, 942
Sau3AI	GATC	7 cut(s)	10, 84, 448, 466, 674, 730, 955
Sau96I	GGNCC	2 cut(s)	455, 1226
SchI	GAGTC	3 cut(s)	512, 619, 1300
ScrFI	CCNGG	3 cut(s)	89, 385, 667
SduI	GDGCHC	1 cut(s)	501
SexAI	ACCWGGT	1 cut(s)	665
SfaNI	GCATC	1 cut(s)	113
SfcI	CTRYAG	1 cut(s)	1217
SfoI	GGCGCC	1 cut(s)	371
SinI	GGWCC	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	586
SmoI	CTYRAG	1 cut(s)	586
SpeI	ACTAGT	1 cut(s)	839
SseBI	AGGCCT	1 cut(s)	1246
SsiI	CCGC	3 cut(s)	373, 503, 700
SspDI	GGCGCC	1 cut(s)	369
SspMI	CTAG	3 cut(s)	726, 840, 1173
StuI	AGGCCT	1 cut(s)	1246
StyD4I	CCNGG	3 cut(s)	87, 383, 665
StyI	CCWWGG	1 cut(s)	826
TaaI	ACNGT	4 cut(s)	493, 529, 937, 1067
TaqI	TCGA	3 cut(s)	758, 773, 1034
TatI	WGTACW	1 cut(s)	1117
TauI	GCSGC	2 cut(s)	375, 702
TfiI	GAWTC	4 cut(s)	142, 764, 1040, 1129
Tru1I	TTAA	2 cut(s)	968, 1125
Tru9I	TTAA	2 cut(s)	968, 1125
TscAI	CASTG	4 cut(s)	49, 74, 249, 496
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	2 cut(s)	375, 941
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	3 cut(s)	311, 459, 1253
TspGWI	ACGGA	1 cut(s)	1299
TspRI	CASTG	4 cut(s)	49, 74, 249, 496
VpaK11BI	GGWCC	1 cut(s)	455
XagI	CCTNNNNNAGG	1 cut(s)	1092
XapI	RAATTY	4 cut(s)	796, 907, 1105, 1135
XceI	RCATGY	1 cut(s)	1124
XmnI	GAANNNNTTC	1 cut(s)	1268
XspI	CTAG	3 cut(s)	726, 840, 1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.