Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012774

Physical Location & Seq

Genomic Coordinates Forward (+)

68301965 .. 68302903

Gene Structure 939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00131620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAGATACTATTCGAGGCGGAGAAATCCCAGAAGGAGAAGCCCGCCGATTCTGTTTGCTACCGCTGAAGATTTTCTTGATGAGGATCATGGGCCTGTGCTTGATCACCCAATTTGGTACATCCACACTGTGGGTCTGTCTCAGGCTTTGATCGATTCCATTACAGTTTGTAAGTATAGAAAAGATGAGGGTTTGATTGAGGGGACGGATTGTTCTGTTTGCTTGAGTGAGTTTGAGGAAGATGAGAGTCTCAGGCTTTTGCCAAAGTGTAGTCATGCTTTTCACATCCCTTGTATTGATACATGGTTGAGATCACATAAGAATTGCCCTCTTTGCCGCGCTCCGATTGTTTGTGGTGCTGCTAGTGATCAAGTGGGTGTCCCGGATTCGATTGCGAGGGGTTCGGGTTCAGGGGAGAGCATTCGGGTGGAGAATTTGGAGAGTGTTGAAGGGATTGGAAGAGGGACTAGTGAGGTTGGAGGTACAGATGATGAGAATGTCAGTGCAATTTCTATTGATGGAAGGAGTGTTGAAAGTTCGAAGGTTTTGCCCAATTCTATTTTGGCTGAGGGAAGTTCTGATCCAAGAGCATTGAGCGATTTGGCGGATAACAGACGCGTGACTGAAGATGTACAACCAATGAGGAGGTCAGTGTCGGTGGATTCAGCGTCTGCTACAAGAATATATCATGCTGTGGCCAATGCTATTCCAGAACAAGGAAGTTCGAATTCCCAATTAGTACTTGTAAAGAATCCAAAGCTGGGGATTGTTCCGAAGAAGGACAGTGCAAGTTCTAGCCTATCCAAGCATTGGAGAAGTTCTTCAAATGGTCTTTCTCTGCAGATGGTGCCAATGGCAATGAAAAGGCCTTTCCCCTCTGGCAGGAAGCTTTTCTCATCGAAACACAGAAGGACTCTTAGCTCAATCCTTCCCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

312

Amino Acids

34.09

Weight (kDa)

7.63

Isoelectric Point (pI)

59.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	70 - 113	2e-14	Ring finger domain
zf-RING_11	PF17123	70 - 99	8.1e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	71 - 112	6.6e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	71 - 112	1e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	73 - 113	3.9e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10380
fragaria_vesca	FvH4_1g20164
malus_domestica	MD01G1036900.v1.1 MD15G1317400.v1.1
prunus_persica	Prupe.6G194300_v2.0.a1
pyrus_communis	pycom01g06390 pycom15g27980
rosa_chinensis	RchiOBHm_Chr2g0112241
rosa_laevigata	RLG00000017962
rosa_multiflora	Rmu_co8477273.1_g000001 Rmu_sc0001386.1_g000026
rosa_roxburghii	Rroxscaffold_2G00131620
rosa_rugosa	Rorug02G0179300
rosa_samantha	Rh2AG231700 Rh2BG245200 Rh2CG236100 Rh2DG239600
rosa_wichuraiana	Rw2G017980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	847
AccB7I	CCANNNNNTGG	2 cut(s)	130, 810
AccII	CGCG	2 cut(s)	339, 618
AciI	CCGC	5 cut(s)	19, 44, 63, 337, 605
AclWI	GGATC	2 cut(s)	93, 575
AcoI	YGGCCR	1 cut(s)	696
AcsI	RAATTY	2 cut(s)	433, 727
AcuI	CTGAAG	2 cut(s)	87, 645
AdeI	CACNNNGTG	1 cut(s)	130
AfaI	GTAC	4 cut(s)	119, 484, 633, 741
AfiI	CCNNNNNNNGG	5 cut(s)	130, 716, 761, 810, 882
AflIII	ACRYGT	1 cut(s)	616
AgsI	TTSAA	3 cut(s)	449, 533, 825
AhlI	ACTAGT	1 cut(s)	467
AloI	GAACNNNNNNTCC	2 cut(s)	196, 228
AluBI	AGCT	3 cut(s)	760, 889, 921
AluI	AGCT	3 cut(s)	760, 889, 921
Alw26I	GTCTC	2 cut(s)	144, 254
AlwI	GGATC	2 cut(s)	93, 575
AlwNI	CAGNNNCTG	1 cut(s)	671
AoxI	GGCC	3 cut(s)	92, 696, 866
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	2 cut(s)	433, 727
Asp700I	GAANNNNTTC	3 cut(s)	72, 820, 890
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	92
AsuC2I	CCSGG	1 cut(s)	383
AsuHPI	GGTGA	1 cut(s)	98
AsuII	TTCGAA	2 cut(s)	539, 725
BalI	TGGCCA	1 cut(s)	698
BanI	GGYRCC	1 cut(s)	847
BbvCI	CCTCAGC	1 cut(s)	567
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	2 cut(s)	512, 838
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BclI	TGATCA	2 cut(s)	103, 367
BcnI	CCSGG	1 cut(s)	383
BcoDI	GTCTC	2 cut(s)	144, 254
BcuI	ACTAGT	1 cut(s)	467
BfaI	CTAG	3 cut(s)	363, 468, 795
BfmI	CTRYAG	1 cut(s)	839
BisI	GCNGC	2 cut(s)	337, 360
BlsI	GCNGC	2 cut(s)	338, 361
BmcAI	AGTACT	1 cut(s)	741
Bme1390I	CCNGG	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	849
BmrFI	CCNGG	1 cut(s)	383
Bpu10I	CCTNAGC	1 cut(s)	567
Bpu14I	TTCGAA	2 cut(s)	539, 725
BpuEI	CTTGAG	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	153
BsaBI	GATNNNNATC	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	5 cut(s)	130, 716, 761, 810, 882
Bse3DI	GCAATG	1 cut(s)	864
Bse8I	GATNNNNATC	1 cut(s)	84
BseCI	ATCGAT	1 cut(s)	153
BseGI	GGATG	2 cut(s)	120, 285
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	5 cut(s)	130, 716, 761, 810, 882
BseMI	GCAATG	1 cut(s)	864
BseMII	CTCAG	3 cut(s)	155, 265, 558
BseRI	GAGGAG	1 cut(s)	658
BseXI	GCAGC	1 cut(s)	346
BseYI	CCCAGC	1 cut(s)	760
Bsh1236I	CGCG	2 cut(s)	339, 618
BshFI	GGCC	3 cut(s)	94, 698, 868
BshNI	GGYRCC	1 cut(s)	847
BshVI	ATCGAT	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	383
BslFI	GGGAC	3 cut(s)	217, 365, 478
BslI	CCNNNNNNNGG	5 cut(s)	130, 716, 761, 810, 882
BsmAI	GTCTC	2 cut(s)	144, 254
BsmFI	GGGAC	3 cut(s)	217, 365, 478
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	3 cut(s)	94, 698, 868
Bsp119I	TTCGAA	2 cut(s)	539, 725
Bsp1407I	TGTACA	1 cut(s)	631
Bsp143I	GATC	6 cut(s)	85, 103, 150, 311, 367, 580
BspACI	CCGC	5 cut(s)	19, 44, 63, 337, 605
BspANI	GGCC	3 cut(s)	94, 698, 868
BspCNI	CTCAG	3 cut(s)	154, 264, 559
BspDI	ATCGAT	1 cut(s)	153
BspFNI	CGCG	2 cut(s)	339, 618
BspLI	GGNNCC	1 cut(s)	849
BspMAI	CTGCAG	1 cut(s)	843
BspPI	GGATC	2 cut(s)	93, 575
BspT104I	TTCGAA	2 cut(s)	539, 725
BspT107I	GGYRCC	1 cut(s)	847
BsrDI	GCAATG	1 cut(s)	864
BsrGI	TGTACA	1 cut(s)	631
BssMI	GATC	6 cut(s)	85, 103, 150, 311, 367, 580
Bst4CI	ACNGT	3 cut(s)	130, 166, 785
Bst6I	CTCTTC	1 cut(s)	454
BstAPI	GCANNNNNTGC	1 cut(s)	847
BstAUI	TGTACA	1 cut(s)	631
BstBI	TTCGAA	2 cut(s)	539, 725
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	4 cut(s)	141, 251, 567, 917
BstENI	CCTNNNNNAGG	1 cut(s)	880
BstF5I	GGATG	2 cut(s)	120, 285
BstFNI	CGCG	2 cut(s)	339, 618
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	6 cut(s)	88, 106, 153, 314, 370, 583
BstMAI	GTCTC	2 cut(s)	144, 254
BstMBI	GATC	6 cut(s)	85, 103, 150, 311, 367, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 847
BstSCI	CCNGG	1 cut(s)	381
BstSFI	CTRYAG	1 cut(s)	839
BstUI	CGCG	2 cut(s)	339, 618
BstV1I	GCAGC	1 cut(s)	346
Bsu15I	ATCGAT	1 cut(s)	153
BsuRI	GGCC	3 cut(s)	94, 698, 868
BsuTUI	ATCGAT	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	120, 285
BtsIMutI	CAGTG	4 cut(s)	126, 508, 657, 790
Cac8I	GCNNGC	1 cut(s)	44
CaiI	CAGNNNCTG	1 cut(s)	671
CfoI	GCGC	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	92
ClaI	ATCGAT	1 cut(s)	153
CseI	GACGC	2 cut(s)	624, 657
Csp6I	GTAC	4 cut(s)	118, 483, 632, 740
CviAII	CATG	4 cut(s)	89, 275, 303, 689
CviQI	GTAC	4 cut(s)	118, 483, 632, 740
DdeI	CTNAG	4 cut(s)	141, 251, 567, 917
DpnI	GATC	6 cut(s)	87, 105, 152, 313, 369, 582
DpnII	GATC	6 cut(s)	85, 103, 150, 311, 367, 580
DraIII	CACNNNGTG	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	696
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
EciI	GGCGGA	2 cut(s)	34, 620
Eco147I	AGGCCT	1 cut(s)	868
Eco57I	CTGAAG	2 cut(s)	87, 645
EcoNI	CCTNNNNNAGG	1 cut(s)	880
EcoRI	GAATTC	1 cut(s)	727
FaeI	CATG	4 cut(s)	92, 278, 306, 692
FaiI	YATR	8 cut(s)	90, 177, 276, 304, 318, 685, 690, 937
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FaqI	GGGAC	3 cut(s)	217, 365, 478
FatI	CATG	4 cut(s)	88, 274, 302, 688
FauI	CCCGC	1 cut(s)	51
FbaI	TGATCA	2 cut(s)	103, 367
Fnu4HI	GCNGC	2 cut(s)	337, 360
FokI	GGATG	2 cut(s)	107, 272
Fsp4HI	GCNGC	2 cut(s)	337, 360
FspBI	CTAG	3 cut(s)	363, 468, 795
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	2 cut(s)	337, 360
GsaI	CCCAGC	1 cut(s)	764
HaeIII	GGCC	3 cut(s)	94, 698, 868
HapII	CCGG	1 cut(s)	383
HgaI	GACGC	2 cut(s)	624, 657
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	4 cut(s)	92, 278, 306, 692
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HindIII	AAGCTT	1 cut(s)	887
HinfI	GANTC	7 cut(s)	49, 155, 247, 386, 662, 751, 913
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	1 cut(s)	98
Hpy188I	TCNGA	3 cut(s)	345, 580, 774
Hpy188III	TCNNGA	2 cut(s)	77, 710
HpyAV	CCTTC	7 cut(s)	27, 443, 516, 535, 772, 903, 938
HpyCH4III	ACNGT	3 cut(s)	130, 166, 785
HpyCH4V	TGCA	3 cut(s)	506, 788, 841
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 847
HpyF3I	CTNAG	4 cut(s)	141, 251, 567, 917
Hsp92II	CATG	4 cut(s)	92, 278, 306, 692
HspAI	GCGC	1 cut(s)	339
Ksp22I	TGATCA	2 cut(s)	103, 367
Kzo9I	GATC	6 cut(s)	85, 103, 150, 311, 367, 580
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	1 cut(s)	346
MaeI	CTAG	3 cut(s)	363, 468, 795
MaeIII	GTNAC	1 cut(s)	619
MalI	GATC	6 cut(s)	87, 105, 152, 313, 369, 582
MboI	GATC	6 cut(s)	85, 103, 150, 311, 367, 580
MboII	GAAGA	6 cut(s)	80, 251, 471, 638, 787, 813
MlsI	TGGCCA	1 cut(s)	698
MluCI	AATT	7 cut(s)	111, 322, 433, 507, 553, 727, 734
MluI	ACGCGT	1 cut(s)	616
MluNI	TGGCCA	1 cut(s)	698
MlyI	GAGTC	2 cut(s)	256, 907
MmeI	TCCRAC	1 cut(s)	457
Mox20I	TGGCCA	1 cut(s)	698
MroXI	GAANNNNTTC	3 cut(s)	72, 820, 890
MscI	TGGCCA	1 cut(s)	698
MslI	CAYNNNNRTG	1 cut(s)	425
Msp20I	TGGCCA	1 cut(s)	698
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	420
MvnI	CGCG	2 cut(s)	339, 618
MwoI	GCNNNNNNNGC	2 cut(s)	333, 847
NciI	CCSGG	1 cut(s)	383
NdeII	GATC	6 cut(s)	85, 103, 150, 311, 367, 580
NlaIII	CATG	4 cut(s)	92, 278, 306, 692
NlaIV	GGNNCC	1 cut(s)	849
NmuCI	GTSAC	1 cut(s)	619
NspV	TTCGAA	2 cut(s)	539, 725
PceI	AGGCCT	1 cut(s)	868
PctI	GAATGC	1 cut(s)	420
PdmI	GAANNNNTTC	3 cut(s)	72, 820, 890
PfeI	GAWTC	5 cut(s)	49, 155, 386, 662, 751
PflMI	CCANNNNNTGG	2 cut(s)	130, 810
PfoI	TCCNGGA	1 cut(s)	381
PkrI	GCNGC	2 cut(s)	338, 361
PleI	GAGTC	2 cut(s)	255, 907
PpsI	GAGTC	2 cut(s)	255, 907
PspFI	CCCAGC	1 cut(s)	760
PspN4I	GGNNCC	1 cut(s)	849
PspPI	GGNCC	1 cut(s)	92
PstI	CTGCAG	1 cut(s)	843
PstNI	CAGNNNCTG	1 cut(s)	671
RsaI	GTAC	4 cut(s)	119, 484, 633, 741
RsaNI	GTAC	4 cut(s)	118, 483, 632, 740
RseI	CAYNNNNRTG	1 cut(s)	425
SatI	GCNGC	2 cut(s)	337, 360
Sau3AI	GATC	6 cut(s)	85, 103, 150, 311, 367, 580
Sau96I	GGNCC	1 cut(s)	92
ScaI	AGTACT	1 cut(s)	741
SchI	GAGTC	2 cut(s)	256, 907
ScrFI	CCNGG	1 cut(s)	383
SetI	ASST	7 cut(s)	477, 484, 546, 650, 762, 891, 923
SfcI	CTRYAG	1 cut(s)	839
SfuI	TTCGAA	2 cut(s)	539, 725
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
SpeI	ACTAGT	1 cut(s)	467
Sse9I	AATT	7 cut(s)	111, 322, 433, 507, 553, 727, 734
SseBI	AGGCCT	1 cut(s)	868
SsiI	CCGC	5 cut(s)	19, 44, 63, 337, 605
SspMI	CTAG	3 cut(s)	363, 468, 795
StuI	AGGCCT	1 cut(s)	868
StyD4I	CCNGG	1 cut(s)	381
TaaI	ACNGT	3 cut(s)	130, 166, 785
TaqI	TCGA	6 cut(s)	14, 153, 389, 539, 725, 899
TasI	AATT	7 cut(s)	111, 322, 433, 507, 553, 727, 734
TatI	WGTACW	2 cut(s)	631, 739
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	5 cut(s)	49, 155, 386, 662, 751
TscAI	CASTG	4 cut(s)	133, 508, 657, 790
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	1 cut(s)	875
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	4 cut(s)	133, 508, 657, 790
Van91I	CCANNNNNTGG	2 cut(s)	130, 810
XagI	CCTNNNNNAGG	1 cut(s)	880
XapI	RAATTY	2 cut(s)	433, 727
XcmI	CCANNNNNNNNNTGG	1 cut(s)	559
XmnI	GAANNNNTTC	3 cut(s)	72, 820, 890
XspI	CTAG	3 cut(s)	363, 468, 795
ZrmI	AGTACT	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.