Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001386.1

Orthogroup ID

OG0012774

Physical Location & Seq

Genomic Coordinates Reverse (-)

94394 .. 95698

Gene Structure 1305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001386.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

atggggttttctcagagaaagctcctcccagaaaacatctttaacaatccaggtgaagccttctgtaaaccttactgtgacccaaatctaaataagcaaggcttgtgtgatgaatcttgctgcaaaatctgcccacaagtctgtaaattttctgtgggtgatgatgataatcttccaccaccatatttaccagcttttcctgacccatctctactactaccgccgccgccgccgccgccgccccctgaggcatctgattctagaccagactatactggccagaagcatctgatccaaacgagtatgatagttgggtcctgtatgatcggggtttctctttttctctgtattgtttttgcaattatgagatactattcgaggcggagaaatcccagaaggagaagcccgccgattctgtttgctacggcggaagattttcttgatgaggatcatgggcctgtgcttgatcaccccatttggtacatccacactgtgggtctgcctcaggctttgatcgattccattacagtttgtaagtatagaaaagatgagggtttgattgaggggacggattgttctgtttgcttgagtgagtttgaggaagatgagagtctcaggcttttgccaaagtgtagtcatgcttttcacatcccttgtattgatacatggttgagatcacataagaattgccctctttgccgcgctccgattgtttgtggtgctgcgagtaatcaagtgagtgtcccggattcgattgcgagtggttcgggttctggggagagcattcgggtggagaatttggagagtgttgaagggattggaagagggactagtgaggttggaggtacagatgatgagaatgtcggtgcaaattctgttgatggaaggagtgttgaaagttcaaaggttttgcctaattctattttggctgagggaagttctgatccaagagcattgagcgatttggcggataatagacgagtgactgaagatgatgtacagccaatgaggaggtcagtgtcggtggattcggtgtctgcttcaagaatatatcatgctgtggccaatgctattccggaacaaggaagttcgaattcccaattagtacttgtaaagaatccaaagttggggattgttcggaagcaggacagtgcaagttctaccctatccaagcattggagaagttcttcaaatggtctttctctgcagatggtgccaatggcaatgaaaaggcctttcccctctggcaggaagcttttctcatcgaaacacagaaggactcttagctcagtccttcccttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

434

Amino Acids

47.38

Weight (kDa)

6.23

Isoelectric Point (pI)

60.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10380
fragaria_vesca	FvH4_1g20164
malus_domestica	MD01G1036900.v1.1 MD15G1317400.v1.1
prunus_persica	Prupe.6G194300_v2.0.a1
pyrus_communis	pycom01g06390 pycom15g27980
rosa_chinensis	RchiOBHm_Chr2g0112241
rosa_laevigata	RLG00000017962
rosa_multiflora	Rmu_co8477273.1_g000001 Rmu_sc0001386.1_g000026
rosa_roxburghii	Rroxscaffold_2G00131620
rosa_rugosa	Rorug02G0179300
rosa_samantha	Rh2AG231700 Rh2BG245200 Rh2CG236100 Rh2DG239600
rosa_wichuraiana	Rw2G017980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1213
AccB7I	CCANNNNNTGG	2 cut(s)	493, 1176
AccII	CGCG	1 cut(s)	702
AccIII	TCCGGA	1 cut(s)	1075
AclWI	GGATC	3 cut(s)	286, 456, 938
AcoI	YGGCCR	2 cut(s)	277, 1062
AcsI	RAATTY	4 cut(s)	146, 796, 871, 1093
AcuI	CTGAAG	1 cut(s)	1008
AdeI	CACNNNGTG	1 cut(s)	493
AfaI	GTAC	4 cut(s)	482, 847, 999, 1107
AfiI	CCNNNNNNNGG	5 cut(s)	493, 1082, 1127, 1176, 1248
AgsI	TTSAA	5 cut(s)	812, 896, 903, 1044, 1191
AhlI	ACTAGT	1 cut(s)	830
AjnI	CCWGG	1 cut(s)	49
AjuI	GAANNNNNNNTTGG	2 cut(s)	1109, 1141
AloI	GAACNNNNNNTCC	2 cut(s)	559, 591
AluBI	AGCT	4 cut(s)	22, 194, 1255, 1287
AluI	AGCT	4 cut(s)	22, 194, 1255, 1287
Alw26I	GTCTC	1 cut(s)	617
AlwI	GGATC	3 cut(s)	286, 456, 938
Aor13HI	TCCGGA	1 cut(s)	1075
AoxI	GGCC	4 cut(s)	277, 455, 1062, 1232
ApeKI	GCWGC	2 cut(s)	120, 722
ApoI	RAATTY	4 cut(s)	146, 796, 871, 1093
Asp700I	GAANNNNTTC	3 cut(s)	435, 1186, 1256
AspLEI	GCGC	1 cut(s)	704
AspS9I	GGNCC	2 cut(s)	315, 455
AsuC2I	CCSGG	1 cut(s)	746
AsuHPI	GGTGA	3 cut(s)	65, 170, 461
AsuII	TTCGAA	1 cut(s)	1091
AvaII	GGWCC	1 cut(s)	315
AxyI	CCTNAGG	2 cut(s)	246, 504
BalI	TGGCCA	2 cut(s)	279, 1064
BanI	GGYRCC	1 cut(s)	1213
BarI	GAAGNNNNNNTAC	2 cut(s)	981, 1013
BbvCI	CCTCAGC	1 cut(s)	930
BbvI	GCAGC	2 cut(s)	107, 709
BccI	CCATC	3 cut(s)	214, 875, 1204
BceAI	ACGGC	1 cut(s)	441
BciT130I	CCWGG	1 cut(s)	51
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	746
BcoDI	GTCTC	1 cut(s)	617
BcuI	ACTAGT	1 cut(s)	830
BfaI	CTAG	2 cut(s)	261, 831
BfmI	CTRYAG	1 cut(s)	1205
BisI	GCNGC	9 cut(s)	121, 224, 227, 230, 233, 236, 239, 700, 723
BlsI	GCNGC	9 cut(s)	122, 225, 228, 231, 234, 237, 240, 701, 724
BmcAI	AGTACT	1 cut(s)	1107
Bme1390I	CCNGG	2 cut(s)	51, 746
Bme18I	GGWCC	1 cut(s)	315
BmgT120I	GGNCC	2 cut(s)	315, 455
BmiI	GGNNCC	2 cut(s)	316, 1215
BmrFI	CCNGG	2 cut(s)	51, 746
BmsI	GCATC	2 cut(s)	260, 295
Bpu10I	CCTNAGC	1 cut(s)	930
Bpu14I	TTCGAA	1 cut(s)	1091
BpuEI	CTTGAG	1 cut(s)	607
BpuMI	CCSGG	1 cut(s)	746
Bsa29I	ATCGAT	1 cut(s)	516
BsaBI	GATNNNNATC	2 cut(s)	168, 447
BsaWI	WCCGGW	1 cut(s)	1075
Bsc4I	CCNNNNNNNGG	5 cut(s)	493, 1082, 1127, 1176, 1248
Bse1I	ACTGG	1 cut(s)	280
Bse21I	CCTNAGG	2 cut(s)	246, 504
Bse3DI	GCAATG	1 cut(s)	1230
Bse8I	GATNNNNATC	2 cut(s)	168, 447
BseAI	TCCGGA	1 cut(s)	1075
BseBI	CCWGG	1 cut(s)	51
BseCI	ATCGAT	1 cut(s)	516
BseGI	GGATG	2 cut(s)	483, 648
BseJI	GATNNNNATC	2 cut(s)	168, 447
BseLI	CCNNNNNNNGG	5 cut(s)	493, 1082, 1127, 1176, 1248
BseMI	GCAATG	1 cut(s)	1230
BseMII	CTCAG	6 cut(s)	26, 237, 518, 628, 921, 1302
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	2 cut(s)	14, 1024
BseXI	GCAGC	2 cut(s)	107, 709
Bsh1236I	CGCG	1 cut(s)	702
BshFI	GGCC	4 cut(s)	279, 457, 1064, 1234
BshNI	GGYRCC	1 cut(s)	1213
BshVI	ATCGAT	1 cut(s)	516
BsiSI	CCGG	2 cut(s)	746, 1076
BslFI	GGGAC	3 cut(s)	580, 728, 841
BslI	CCNNNNNNNGG	5 cut(s)	493, 1082, 1127, 1176, 1248
BsmAI	GTCTC	1 cut(s)	617
BsmFI	GGGAC	3 cut(s)	580, 728, 841
BsmI	GAATGC	1 cut(s)	783
BsnI	GGCC	4 cut(s)	279, 457, 1064, 1234
Bsp119I	TTCGAA	1 cut(s)	1091
Bsp13I	TCCGGA	1 cut(s)	1075
Bsp1407I	TGTACA	1 cut(s)	997
Bsp143I	GATC	7 cut(s)	291, 324, 448, 466, 513, 674, 943
BspANI	GGCC	4 cut(s)	279, 457, 1064, 1234
BspCNI	CTCAG	6 cut(s)	25, 238, 517, 627, 922, 1301
BspDI	ATCGAT	1 cut(s)	516
BspEI	TCCGGA	1 cut(s)	1075
BspFNI	CGCG	1 cut(s)	702
BspLI	GGNNCC	2 cut(s)	316, 1215
BspMAI	CTGCAG	1 cut(s)	1209
BspPI	GGATC	3 cut(s)	286, 456, 938
BspT104I	TTCGAA	1 cut(s)	1091
BspT107I	GGYRCC	1 cut(s)	1213
BsrDI	GCAATG	1 cut(s)	1230
BsrGI	TGTACA	1 cut(s)	997
BsrI	ACTGG	1 cut(s)	280
BssMI	GATC	7 cut(s)	291, 324, 448, 466, 513, 674, 943
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	4 cut(s)	77, 493, 529, 1151
Bst6I	CTCTTC	1 cut(s)	817
BstAPI	GCANNNNNTGC	2 cut(s)	129, 1213
BstAUI	TGTACA	1 cut(s)	997
BstBI	TTCGAA	1 cut(s)	1091
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	7 cut(s)	12, 246, 504, 614, 930, 1283, 1288
BstENI	CCTNNNNNAGG	1 cut(s)	1246
BstF5I	GGATG	2 cut(s)	483, 648
BstFNI	CGCG	1 cut(s)	702
BstHHI	GCGC	1 cut(s)	704
BstKTI	GATC	7 cut(s)	294, 327, 451, 469, 516, 677, 946
BstMAI	GTCTC	1 cut(s)	617
BstMBI	GATC	7 cut(s)	291, 324, 448, 466, 513, 674, 943
BstMWI	GCNNNNNNNGC	7 cut(s)	129, 229, 232, 235, 238, 696, 1213
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	49, 744
BstSFI	CTRYAG	1 cut(s)	1205
BstUI	CGCG	1 cut(s)	702
BstV1I	GCAGC	2 cut(s)	107, 709
Bsu15I	ATCGAT	1 cut(s)	516
Bsu36I	CCTNAGG	2 cut(s)	246, 504
BsuRI	GGCC	4 cut(s)	279, 457, 1064, 1234
BsuTUI	ATCGAT	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	483, 648
BtsIMutI	CAGTG	3 cut(s)	489, 1023, 1156
Cac8I	GCNNGC	1 cut(s)	407
CfoI	GCGC	1 cut(s)	704
Cfr13I	GGNCC	2 cut(s)	315, 455
ClaI	ATCGAT	1 cut(s)	516
Csp6I	GTAC	4 cut(s)	481, 846, 998, 1106
CviAII	CATG	4 cut(s)	452, 638, 666, 1055
CviQI	GTAC	4 cut(s)	481, 846, 998, 1106
DdeI	CTNAG	7 cut(s)	12, 246, 504, 614, 930, 1283, 1288
DpnI	GATC	7 cut(s)	293, 326, 450, 468, 515, 676, 945
DpnII	GATC	7 cut(s)	291, 324, 448, 466, 513, 674, 943
DraIII	CACNNNGTG	1 cut(s)	493
EaeI	YGGCCR	2 cut(s)	277, 1062
Eam1104I	CTCTTC	1 cut(s)	817
EarI	CTCTTC	1 cut(s)	817
EciI	GGCGGA	3 cut(s)	397, 443, 983
Eco147I	AGGCCT	1 cut(s)	1234
Eco47I	GGWCC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	1008
Eco81I	CCTNAGG	2 cut(s)	246, 504
EcoNI	CCTNNNNNAGG	1 cut(s)	1246
EcoO109I	RGGNCCY	1 cut(s)	315
EcoRI	GAATTC	1 cut(s)	1093
EcoRII	CCWGG	1 cut(s)	49
FaeI	CATG	4 cut(s)	455, 641, 669, 1058
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 423, 455
FaqI	GGGAC	3 cut(s)	580, 728, 841
FatI	CATG	4 cut(s)	451, 637, 665, 1054
FauI	CCCGC	1 cut(s)	414
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	9 cut(s)	121, 224, 227, 230, 233, 236, 239, 700, 723
FokI	GGATG	2 cut(s)	470, 635
Fsp4HI	GCNGC	9 cut(s)	121, 224, 227, 230, 233, 236, 239, 700, 723
FspBI	CTAG	2 cut(s)	261, 831
GlaI	GCGC	1 cut(s)	703
GluI	GCNGC	9 cut(s)	121, 224, 227, 230, 233, 236, 239, 700, 723
HaeIII	GGCC	4 cut(s)	279, 457, 1064, 1234
HapII	CCGG	2 cut(s)	746, 1076
HhaI	GCGC	1 cut(s)	704
Hin1II	CATG	4 cut(s)	455, 641, 669, 1058
Hin6I	GCGC	1 cut(s)	702
HinP1I	GCGC	1 cut(s)	702
HindIII	AAGCTT	1 cut(s)	1253
HinfI	GANTC	9 cut(s)	113, 257, 412, 518, 610, 749, 1028, 1117, 1279
HpaII	CCGG	2 cut(s)	746, 1076
HphI	GGTGA	3 cut(s)	65, 170, 461
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	6 cut(s)	15, 256, 291, 708, 943, 1140
Hpy188III	TCNNGA	5 cut(s)	200, 261, 440, 1044, 1076
Hpy8I	GTNNAC	1 cut(s)	68
HpyAV	CCTTC	6 cut(s)	70, 390, 806, 879, 1269, 1304
HpyCH4III	ACNGT	4 cut(s)	77, 493, 529, 1151
HpyCH4V	TGCA	5 cut(s)	123, 359, 869, 1154, 1207
HpyF10VI	GCNNNNNNNGC	7 cut(s)	129, 229, 232, 235, 238, 696, 1213
HpyF3I	CTNAG	7 cut(s)	12, 246, 504, 614, 930, 1283, 1288
Hsp92II	CATG	4 cut(s)	455, 641, 669, 1058
HspAI	GCGC	1 cut(s)	702
Kpn2I	TCCGGA	1 cut(s)	1075
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	7 cut(s)	291, 324, 448, 466, 513, 674, 943
LmnI	GCTCC	2 cut(s)	27, 709
Lsp1109I	GCAGC	2 cut(s)	107, 709
LweI	GCATC	2 cut(s)	260, 295
MaeI	CTAG	2 cut(s)	261, 831
MaeIII	GTNAC	2 cut(s)	77, 982
MalI	GATC	7 cut(s)	293, 326, 450, 468, 515, 676, 945
MboI	GATC	7 cut(s)	291, 324, 448, 466, 513, 674, 943
MboII	GAAGA	6 cut(s)	164, 443, 614, 834, 1001, 1179
MlsI	TGGCCA	2 cut(s)	279, 1064
MluCI	AATT	8 cut(s)	146, 360, 685, 796, 871, 916, 1093, 1100
MluNI	TGGCCA	2 cut(s)	279, 1064
MlyI	GAGTC	2 cut(s)	619, 1273
MmeI	TCCRAC	1 cut(s)	820
Mox20I	TGGCCA	2 cut(s)	279, 1064
MroI	TCCGGA	1 cut(s)	1075
MroXI	GAANNNNTTC	3 cut(s)	435, 1186, 1256
MscI	TGGCCA	2 cut(s)	279, 1064
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	788
Msp20I	TGGCCA	2 cut(s)	279, 1064
MspI	CCGG	2 cut(s)	746, 1076
MspR9I	CCNGG	2 cut(s)	51, 746
Mva1269I	GAATGC	1 cut(s)	783
MvaI	CCWGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	702
MwoI	GCNNNNNNNGC	7 cut(s)	129, 229, 232, 235, 238, 696, 1213
NciI	CCSGG	1 cut(s)	746
NdeII	GATC	7 cut(s)	291, 324, 448, 466, 513, 674, 943
NlaIII	CATG	4 cut(s)	455, 641, 669, 1058
NlaIV	GGNNCC	2 cut(s)	316, 1215
NmuCI	GTSAC	2 cut(s)	77, 982
NspV	TTCGAA	1 cut(s)	1091
PceI	AGGCCT	1 cut(s)	1234
PctI	GAATGC	1 cut(s)	783
PdmI	GAANNNNTTC	3 cut(s)	435, 1186, 1256
PfeI	GAWTC	7 cut(s)	113, 257, 412, 518, 749, 1028, 1117
PflMI	CCANNNNNTGG	2 cut(s)	493, 1176
PfoI	TCCNGGA	1 cut(s)	744
PkrI	GCNGC	9 cut(s)	122, 225, 228, 231, 234, 237, 240, 701, 724
PleI	GAGTC	2 cut(s)	618, 1273
PpsI	GAGTC	2 cut(s)	618, 1273
PpuMI	RGGWCCY	1 cut(s)	315
Psp5II	RGGWCCY	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	316, 1215
PspPI	GGNCC	2 cut(s)	315, 455
PspPPI	RGGWCCY	1 cut(s)	315
PstI	CTGCAG	1 cut(s)	1209
RsaI	GTAC	4 cut(s)	482, 847, 999, 1107
RsaNI	GTAC	4 cut(s)	481, 846, 998, 1106
RseI	CAYNNNNRTG	1 cut(s)	788
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	9 cut(s)	121, 224, 227, 230, 233, 236, 239, 700, 723
Sau3AI	GATC	7 cut(s)	291, 324, 448, 466, 513, 674, 943
Sau96I	GGNCC	2 cut(s)	315, 455
ScaI	AGTACT	1 cut(s)	1107
SchI	GAGTC	2 cut(s)	619, 1273
ScrFI	CCNGG	2 cut(s)	51, 746
SfaNI	GCATC	2 cut(s)	260, 295
SfcI	CTRYAG	1 cut(s)	1205
SfuI	TTCGAA	1 cut(s)	1091
SinI	GGWCC	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	788
SmlI	CTYRAG	1 cut(s)	586
SmoI	CTYRAG	1 cut(s)	586
SpeI	ACTAGT	1 cut(s)	830
Sse9I	AATT	8 cut(s)	146, 360, 685, 796, 871, 916, 1093, 1100
SseBI	AGGCCT	1 cut(s)	1234
SspMI	CTAG	2 cut(s)	261, 831
StuI	AGGCCT	1 cut(s)	1234
StyD4I	CCNGG	2 cut(s)	49, 744
TaaI	ACNGT	4 cut(s)	77, 493, 529, 1151
TaqI	TCGA	5 cut(s)	377, 516, 752, 1091, 1265
TasI	AATT	8 cut(s)	146, 360, 685, 796, 871, 916, 1093, 1100
TatI	WGTACW	2 cut(s)	997, 1105
TauI	GCSGC	7 cut(s)	226, 229, 232, 235, 238, 241, 702
TfiI	GAWTC	7 cut(s)	113, 257, 412, 518, 749, 1028, 1117
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	3 cut(s)	496, 1023, 1156
TseFI	GTSAC	2 cut(s)	77, 982
TseI	GCWGC	2 cut(s)	120, 722
Tsp45I	GTSAC	2 cut(s)	77, 982
TspDTI	ATGAA	2 cut(s)	126, 1241
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	3 cut(s)	496, 1023, 1156
Van91I	CCANNNNNTGG	2 cut(s)	493, 1176
VpaK11BI	GGWCC	1 cut(s)	315
XagI	CCTNNNNNAGG	1 cut(s)	1246
XapI	RAATTY	4 cut(s)	146, 796, 871, 1093
XbaI	TCTAGA	1 cut(s)	260
XmnI	GAANNNNTTC	3 cut(s)	435, 1186, 1256
XspI	CTAG	2 cut(s)	261, 831
ZrmI	AGTACT	1 cut(s)	1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.