Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0012774

Physical Location & Seq

Genomic Coordinates Forward (+)

6620437 .. 6622058

Gene Structure 1622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06390.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGGAGTTTGATCACAGAAAAGTCCTAGCACAAACAAATTTGAGTGAGCAATTGGTTTGTTCATTTCCTTGTAATCCACATCTGAACAAAGGGGGTTATTGCTTTCAATCTTGTTTCAAAACCTGCCCTGATGTCTGTAAGAATCTTATAGTCTATGTTGGTGGTGAGCTTGCTCCTCCAATTGTACCATACCCTCCTCCGCCGCCATCTACTCCGCTGCCACCGCTGACTGACTATTATTATCAGCCCGAATCTGAGCGGAAGCGTCTGATTGAAACGAGTATGACTATCACCGCTTGTATGGTTGGGGCTGCTCTTCTTCTCGCTATTGTTTTCTCACTTGTTAGATTTTATCGCCGCCGCCGCGATGATTCGACGAGGAGGAGTGGTTCTTTCCCGATTTTGTTTGATACCCAACAAGATTTTCTTGATGAAGATCATGGTCCTGTTCTTGATCATCCCATTTGGTACATCCACACTGTTGGTCTCCCACAATCGGTGATTGACTCCATAACCGTCTGCAAGTTTCGAAAAGATGAGGGTTTGATTGAGGGAACTGATTGTTCTGTTTGCTTGAGTGAATTTGAAGAAGATGAGAGTCTTAGACTTTTGCCCAAATGCAGTCATGCCTTTCACATCCCTTGTATTGATACCTGGTTGATCGATCACATAAGAATTGCCCACTTTGCCGTTCCGGAGTCTGTTTCCAGTGGTTCGGGCTTGCGGGATAGCATTCAGGTGGAGAATTTGGAGGGTGATGAAGGGGTTGGAAGTGTTGGAAGAGGGACTAGTGAGGTTGGGGTTGGAGATGATGGGAATGTTTGTGAAACTCGAATTGAGGGAAGAAGCATGGAAAATTCAAGGAAGGTTTTGCCAAATTCCATTGTTCCTGTGGGAATCTGTGATCCAAGAGCATTCAGTGATTTGTCTGACAATCGACGGGTTACTGAAGAGGATGTTCAACCAATGAGGAGATCAGGTTCGATGGATTCATTATCTGCTTTGAGAATATATCGTGATGTGGCGAATGTAATTCCCAAAGAAGGAAGTTCGAATTCCCAATCACATGTAAAGAATATGAATTCGGGGATTGTTTCAAAGCATGGCAGTTCAAGTTCCAGCCTATCCAAACTAATGAGAAGCTCTTCAGTTGGGTTTTCTCTGCAGATGGGGCCAATATCAATGAAAAGGCCATTTGCATCTGCTCAATCCTACCCTTATGAAGATTTGGGTACCCTTTATAATGTCTCAAGTTTTGAGTCAGTTTCTAGCAAAATCAAGAAATCAATGGCCTTCCCAACCGCCTCTGCACCCTACCTACATGAGAAAAACCAGCAAAGTTGGTATAGCGGTAAGGATTTTGGTACTGAAATTTCAAGTTTTTTAGGTTCTCAAAGGTTAAGAAAAAAGAAGATATGGACTGCAACAAGTGGTCTCATGTTATTGCTTCTTATAGTGAATTTTCTGTTTTTTTGTTTAAGTACGCATAATGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

499

Amino Acids

55.23

Weight (kDa)

6.25

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10380
fragaria_vesca	FvH4_1g20164
malus_domestica	MD01G1036900.v1.1 MD15G1317400.v1.1
prunus_persica	Prupe.6G194300_v2.0.a1
pyrus_communis	pycom01g06390 pycom15g27980
rosa_chinensis	RchiOBHm_Chr2g0112241
rosa_laevigata	RLG00000017962
rosa_multiflora	Rmu_co8477273.1_g000001 Rmu_sc0001386.1_g000026
rosa_roxburghii	Rroxscaffold_2G00131620
rosa_rugosa	Rorug02G0179300
rosa_samantha	Rh2AG231700 Rh2BG245200 Rh2CG236100 Rh2DG239600
rosa_wichuraiana	Rw2G017980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1242
Acc36I	ACCTGC	1 cut(s)	131
Acc65I	GGTACC	1 cut(s)	1232
AccB1I	GGYRCC	1 cut(s)	1232
AccBSI	CCGCTC	1 cut(s)	259
AccII	CGCG	1 cut(s)	366
AccIII	TCCGGA	1 cut(s)	694
AclWI	GGATC	1 cut(s)	899
AcsI	RAATTY	9 cut(s)	37, 581, 745, 856, 877, 1054, 1081, 1371, 1459
AcuI	CTGAAG	2 cut(s)	969, 1131
AfaI	GTAC	5 cut(s)	186, 470, 1234, 1366, 1483
AfiI	CCNNNNNNNGG	2 cut(s)	496, 1043
AflIII	ACRYGT	1 cut(s)	1066
AgsI	TTSAA	9 cut(s)	107, 118, 275, 587, 861, 962, 1098, 1113, 1377
AhlI	ACTAGT	1 cut(s)	788
AjnI	CCWGG	1 cut(s)	653
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AloI	GAACNNNNNNTCC	4 cut(s)	373, 405, 964, 996
AluBI	AGCT	2 cut(s)	169, 1143
AluI	AGCT	2 cut(s)	169, 1143
Alw26I	GTCTC	3 cut(s)	491, 1252, 1439
AlwI	GGATC	1 cut(s)	899
Aor13HI	TCCGGA	1 cut(s)	694
AoxI	GGCC	3 cut(s)	1172, 1190, 1290
ApeKI	GCWGC	2 cut(s)	217, 311
ApoI	RAATTY	9 cut(s)	37, 581, 745, 856, 877, 1054, 1081, 1371, 1459
Asp700I	GAANNNNTTC	1 cut(s)	1144
Asp718I	GGTACC	1 cut(s)	1232
AspS9I	GGNCC	2 cut(s)	443, 1172
AsuHPI	GGTGA	4 cut(s)	176, 283, 511, 767
AsuII	TTCGAA	2 cut(s)	529, 1052
AvaII	GGWCC	1 cut(s)	443
BanI	GGYRCC	1 cut(s)	1232
BbvI	GCAGC	2 cut(s)	204, 298
BccI	CCATC	4 cut(s)	214, 806, 979, 1162
BceAI	ACGGC	1 cut(s)	674
BciT130I	CCWGG	1 cut(s)	655
BclI	TGATCA	2 cut(s)	10, 454
BcoDI	GTCTC	3 cut(s)	491, 1252, 1439
BcuI	ACTAGT	1 cut(s)	788
BfaI	CTAG	3 cut(s)	26, 789, 1269
BfmI	CTRYAG	1 cut(s)	1163
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	6 cut(s)	203, 218, 312, 358, 361, 364
BlsI	GCNGC	6 cut(s)	204, 219, 313, 359, 362, 365
Bme1390I	CCNGG	1 cut(s)	655
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	2 cut(s)	443, 1172
BmiI	GGNNCC	2 cut(s)	1173, 1234
BmrFI	CCNGG	1 cut(s)	655
BmsI	GCATC	1 cut(s)	1208
Bpu14I	TTCGAA	2 cut(s)	529, 1052
BpuEI	CTTGAG	2 cut(s)	595, 1234
Bsa29I	ATCGAT	1 cut(s)	663
BsaBI	GATNNNNATC	1 cut(s)	435
BsaI	GGTCTC	2 cut(s)	491, 1439
BsaWI	WCCGGW	1 cut(s)	694
BsaXI	ACNNNNNCTCC	4 cut(s)	373, 403, 964, 994
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 1043
Bse1I	ACTGG	1 cut(s)	708
Bse8I	GATNNNNATC	1 cut(s)	435
BseAI	TCCGGA	1 cut(s)	694
BseBI	CCWGG	1 cut(s)	655
BseCI	ATCGAT	1 cut(s)	663
BseGI	GGATG	4 cut(s)	457, 471, 636, 961
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	2 cut(s)	496, 1043
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	708
BseRI	GAGGAG	5 cut(s)	165, 186, 394, 397, 985
BseXI	GCAGC	2 cut(s)	204, 298
BsgI	GTGCAG	1 cut(s)	1293
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	3 cut(s)	1174, 1192, 1292
BshNI	GGYRCC	1 cut(s)	1232
BshVI	ATCGAT	1 cut(s)	663
BsiSI	CCGG	1 cut(s)	695
BslFI	GGGAC	1 cut(s)	799
BslI	CCNNNNNNNGG	2 cut(s)	496, 1043
BsmAI	GTCTC	3 cut(s)	491, 1252, 1439
BsmFI	GGGAC	1 cut(s)	799
BsmI	GAATGC	2 cut(s)	732, 914
BsnI	GGCC	3 cut(s)	1174, 1192, 1292
Bso31I	GGTCTC	2 cut(s)	491, 1439
Bsp119I	TTCGAA	2 cut(s)	529, 1052
Bsp13I	TCCGGA	1 cut(s)	694
Bsp143I	GATC	7 cut(s)	10, 436, 454, 660, 664, 904, 974
BspANI	GGCC	3 cut(s)	1174, 1192, 1292
BspCNI	CTCAG	1 cut(s)	247
BspDI	ATCGAT	1 cut(s)	663
BspEI	TCCGGA	1 cut(s)	694
BspFNI	CGCG	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	1173, 1234
BspMAI	CTGCAG	1 cut(s)	1167
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	1 cut(s)	899
BspQI	GCTCTTC	2 cut(s)	321, 1150
BspT104I	TTCGAA	2 cut(s)	529, 1052
BspT107I	GGYRCC	1 cut(s)	1232
BspTNI	GGTCTC	2 cut(s)	491, 1439
BsrBI	CCGCTC	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	708
BssMI	GATC	7 cut(s)	10, 436, 454, 660, 664, 904, 974
Bst2UI	CCWGG	1 cut(s)	655
Bst4CI	ACNGT	2 cut(s)	481, 517
Bst6I	CTCTTC	4 cut(s)	321, 775, 945, 1150
BstBI	TTCGAA	2 cut(s)	529, 1052
BstC8I	GCNNGC	2 cut(s)	171, 722
BstDEI	CTNAG	2 cut(s)	255, 602
BstF5I	GGATG	4 cut(s)	457, 471, 636, 961
BstFNI	CGCG	1 cut(s)	366
BstKTI	GATC	7 cut(s)	13, 439, 457, 663, 667, 907, 977
BstMAI	GTCTC	3 cut(s)	491, 1252, 1439
BstMBI	GATC	7 cut(s)	10, 436, 454, 660, 664, 904, 974
BstMWI	GCNNNNNNNGC	4 cut(s)	223, 363, 686, 1171
BstNI	CCWGG	1 cut(s)	655
BstNSI	RCATGY	1 cut(s)	1070
BstSCI	CCNGG	1 cut(s)	653
BstSFI	CTRYAG	1 cut(s)	1163
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	2 cut(s)	204, 298
BstXI	CCANNNNNNTGG	1 cut(s)	482
Bsu15I	ATCGAT	1 cut(s)	663
BsuRI	GGCC	3 cut(s)	1174, 1192, 1292
BsuTUI	ATCGAT	1 cut(s)	663
BtgZI	GCGATG	1 cut(s)	381
BtsCI	GGATG	4 cut(s)	457, 471, 636, 961
BtsIMutI	CAGTG	3 cut(s)	477, 715, 925
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	2 cut(s)	171, 722
Cfr13I	GGNCC	2 cut(s)	443, 1172
ClaI	ATCGAT	1 cut(s)	663
CseI	GACGC	1 cut(s)	254
CsiI	ACCWGGT	1 cut(s)	653
Csp6I	GTAC	5 cut(s)	185, 469, 1233, 1365, 1482
CviAII	CATG	7 cut(s)	440, 626, 850, 1067, 1103, 1322, 1438
CviJI	RGCY	9 cut(s)	169, 247, 311, 720, 1122, 1143, 1174, 1192, 1292
CviKI_1	RGCY	9 cut(s)	169, 247, 311, 720, 1122, 1143, 1174, 1192, 1292
CviQI	GTAC	5 cut(s)	185, 469, 1233, 1365, 1482
DdeI	CTNAG	2 cut(s)	255, 602
DpnI	GATC	7 cut(s)	12, 438, 456, 662, 666, 906, 976
DpnII	GATC	7 cut(s)	10, 436, 454, 660, 664, 904, 974
Eam1104I	CTCTTC	4 cut(s)	321, 775, 945, 1150
EarI	CTCTTC	4 cut(s)	321, 775, 945, 1150
EciI	GGCGGA	1 cut(s)	189
Eco31I	GGTCTC	2 cut(s)	491, 1439
Eco47I	GGWCC	1 cut(s)	443
Eco57I	CTGAAG	2 cut(s)	969, 1131
EcoRI	GAATTC	2 cut(s)	1054, 1081
EcoRII	CCWGG	1 cut(s)	653
FaeI	CATG	7 cut(s)	443, 629, 853, 1070, 1106, 1325, 1441
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FaqI	GGGAC	1 cut(s)	799
FatI	CATG	7 cut(s)	439, 625, 849, 1066, 1102, 1321, 1437
FauI	CCCGC	1 cut(s)	717
FbaI	TGATCA	2 cut(s)	10, 454
Fnu4HI	GCNGC	6 cut(s)	203, 218, 312, 358, 361, 364
FokI	GGATG	4 cut(s)	444, 458, 623, 968
Fsp4HI	GCNGC	6 cut(s)	203, 218, 312, 358, 361, 364
FspBI	CTAG	3 cut(s)	26, 789, 1269
GluI	GCNGC	6 cut(s)	203, 218, 312, 358, 361, 364
HaeIII	GGCC	3 cut(s)	1174, 1192, 1292
HapII	CCGG	1 cut(s)	695
HgaI	GACGC	1 cut(s)	254
Hin1II	CATG	7 cut(s)	443, 629, 853, 1070, 1106, 1325, 1441
HinfI	GANTC	9 cut(s)	142, 251, 371, 506, 598, 698, 897, 989, 1259
HpaII	CCGG	1 cut(s)	695
HphI	GGTGA	4 cut(s)	176, 283, 511, 767
Hpy188I	TCNGA	4 cut(s)	84, 256, 270, 931
Hpy188III	TCNNGA	6 cut(s)	397, 428, 452, 695, 1016, 1279
Hpy99I	CGWCG	2 cut(s)	379, 942
HpyAV	CCTTC	4 cut(s)	755, 859, 1037, 1303
HpyCH4III	ACNGT	2 cut(s)	481, 517
HpyCH4V	TGCA	6 cut(s)	522, 621, 1165, 1199, 1310, 1424
HpyF10VI	GCNNNNNNNGC	4 cut(s)	223, 363, 686, 1171
HpyF3I	CTNAG	2 cut(s)	255, 602
Hsp92II	CATG	7 cut(s)	443, 629, 853, 1070, 1106, 1325, 1441
Kpn2I	TCCGGA	1 cut(s)	694
KpnI	GGTACC	1 cut(s)	1236
Ksp22I	TGATCA	2 cut(s)	10, 454
Kzo9I	GATC	7 cut(s)	10, 436, 454, 660, 664, 904, 974
LguI	GCTCTTC	2 cut(s)	321, 1150
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	2 cut(s)	204, 298
LweI	GCATC	1 cut(s)	1208
MabI	ACCWGGT	1 cut(s)	653
MaeI	CTAG	3 cut(s)	26, 789, 1269
MaeIII	GTNAC	1 cut(s)	943
MalI	GATC	7 cut(s)	12, 438, 456, 662, 666, 906, 976
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	7 cut(s)	10, 436, 454, 660, 664, 904, 974
MfeI	CAATTG	2 cut(s)	50, 180
MlyI	GAGTC	4 cut(s)	500, 607, 707, 1268
MmeI	TCCRAC	3 cut(s)	748, 757, 784
MroI	TCCGGA	1 cut(s)	694
MroXI	GAANNNNTTC	1 cut(s)	1144
MseI	TTAA	2 cut(s)	1400, 1478
MslI	CAYNNNNRTG	1 cut(s)	737
MspA1I	CMGCKG	2 cut(s)	217, 226
MspI	CCGG	1 cut(s)	695
MspR9I	CCNGG	1 cut(s)	655
MunI	CAATTG	2 cut(s)	50, 180
Mva1269I	GAATGC	2 cut(s)	732, 914
MvaI	CCWGG	1 cut(s)	655
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	4 cut(s)	223, 363, 686, 1171
NdeII	GATC	7 cut(s)	10, 436, 454, 660, 664, 904, 974
NlaIII	CATG	7 cut(s)	443, 629, 853, 1070, 1106, 1325, 1441
NlaIV	GGNNCC	2 cut(s)	1173, 1234
NspI	RCATGY	1 cut(s)	1070
NspV	TTCGAA	2 cut(s)	529, 1052
PciI	ACATGT	1 cut(s)	1066
PciSI	GCTCTTC	2 cut(s)	321, 1150
PcsI	WCGNNNNNNNCGW	1 cut(s)	1490
PctI	GAATGC	2 cut(s)	732, 914
PdmI	GAANNNNTTC	1 cut(s)	1144
PfeI	GAWTC	5 cut(s)	142, 251, 371, 897, 989
PkrI	GCNGC	6 cut(s)	204, 219, 313, 359, 362, 365
PleI	GAGTC	4 cut(s)	500, 606, 706, 1267
PpsI	GAGTC	4 cut(s)	500, 606, 706, 1267
PscI	ACATGT	1 cut(s)	1066
PsiI	TTATAA	1 cut(s)	1242
Psp6I	CCWGG	1 cut(s)	653
PspGI	CCWGG	1 cut(s)	653
PspN4I	GGNNCC	2 cut(s)	1173, 1234
PspPI	GGNCC	2 cut(s)	443, 1172
PstI	CTGCAG	1 cut(s)	1167
RsaI	GTAC	5 cut(s)	186, 470, 1234, 1366, 1483
RsaNI	GTAC	5 cut(s)	185, 469, 1233, 1365, 1482
RseI	CAYNNNNRTG	1 cut(s)	737
SapI	GCTCTTC	2 cut(s)	321, 1150
SaqAI	TTAA	2 cut(s)	1400, 1478
SatI	GCNGC	6 cut(s)	203, 218, 312, 358, 361, 364
Sau3AI	GATC	7 cut(s)	10, 436, 454, 660, 664, 904, 974
Sau96I	GGNCC	2 cut(s)	443, 1172
SchI	GAGTC	4 cut(s)	500, 607, 707, 1268
ScrFI	CCNGG	1 cut(s)	655
SexAI	ACCWGGT	1 cut(s)	653
SfaNI	GCATC	1 cut(s)	1208
SfcI	CTRYAG	1 cut(s)	1163
SfuI	TTCGAA	2 cut(s)	529, 1052
SinI	GGWCC	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	737
SmlI	CTYRAG	2 cut(s)	574, 1249
SmoI	CTYRAG	2 cut(s)	574, 1249
SpeI	ACTAGT	1 cut(s)	788
SspMI	CTAG	3 cut(s)	26, 789, 1269
StyD4I	CCNGG	1 cut(s)	653
TaaI	ACNGT	2 cut(s)	481, 517
TaqI	TCGA	7 cut(s)	374, 529, 663, 832, 937, 983, 1052
TauI	GCSGC	4 cut(s)	205, 360, 363, 366
TfiI	GAWTC	5 cut(s)	142, 251, 371, 897, 989
Tru1I	TTAA	2 cut(s)	1400, 1478
Tru9I	TTAA	2 cut(s)	1400, 1478
TscAI	CASTG	3 cut(s)	484, 715, 925
TseI	GCWGC	2 cut(s)	217, 311
TspDTI	ATGAA	7 cut(s)	51, 447, 774, 981, 1094, 1199, 1236
TspRI	CASTG	3 cut(s)	484, 715, 925
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	9 cut(s)	37, 581, 745, 856, 877, 1054, 1081, 1371, 1459
XceI	RCATGY	1 cut(s)	1070
XcmI	CCANNNNNNNNNTGG	1 cut(s)	889
XmnI	GAANNNNTTC	1 cut(s)	1144
XspI	CTAG	3 cut(s)	26, 789, 1269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.