Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012774

Physical Location & Seq

Genomic Coordinates Reverse (-)

12404869 .. 12406098

Gene Structure 1230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20164.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGGGTTTTCCCAAAGAAAGTTCTTCGTGAACGATCCAGATGTGATCTGTAAACTTAGTTGTGACCCTAAAGTAAATAAACGAGGCTTTTGTCTTGAACCTTGCTGCAAACTCTGCCCACTTGTCTGTAAAACTCTTCCTGACCCACCTCTACTGCCGCCGCCGCCGCCTAAGTTGGTTGATGATAATCCAGCCTCTACTAGCCAGAAGCATCTGATTCAAACGAGTATGATAGTTGGGTCTTGTATGATTGGGGCTTCTCTTCTTCTTTGTATTGTTTTTGCTCTTATGAGATTCTATTCGAGTCGGAGAAATCCCAGAAGGAGGAGATCGCCGATTCTGTTTACTACATCGGAAGATTTTCTTGATGAGGATCATGGGCCTGTTCTTGATCATCCCATTTGGTACATCCACACGGTGGGTCTGTCTCAGGCTTTAATTGATTCCATTACGGTTTGTAAGTATAGGAAAGATGAGGGTTTGATTGAGGGGACGGATTGTTCTGTTTGCTTGAGTGAGTTTGAGGAAGATGAGAGTCTCAGGCTTTTGCCAAAGTGTAGTCATGCTTTTCATATTCCTTGTATTGATACATGGTTGAGATCACATAAGAATTGCCCTCTTTGCCGCGCTCCGATTGTTTGTGGTGCTGCTAGTGATCAAGTGAGTGTCCCGGATTCGATTGCGAGTGGTTCTGGTTCTGGGGAGAGCATTCGGGTGGAGAATTTGGAGAGTGTTGAAGGGATTGAAAGAGGGACCAGTGAGGTTGTGAGTACAGATGATGAGAATGTCAGTACAGTTTCGATTGATGGTAGGAGTGTTGAAAGTTCAAAGGTTTTGCCTAATTCTAATTTGGCTGAGGGAAGTTGTGATCCGAGAGCATGGAGCGATTTGGCGGATAATAGACGAGTGACTGAAGATGATGTGCAGCCAATTAGGAGGTCAGTTTCAGTGGATTCAATGTCTGCTTCAAGAATATATCGTGCTGTGGCTAATGTTATTCCGGAACAAGGAAGTTCGAATTCCCAATTAGTACTTGTAAAGAATCCAAAGTCGGGGATTGTTCCGAAGCAGGACAATGCAAGTTCTAGCGTATCTAAGCATAAGAGAAGTTCTTCAAATGTTATTTCTCTGCAGATGGTGCCAATGGCAATGAAAATGCCTTTTCCCTCTGGCAAGAAGCTTTTCTCATCGAAACACAGAAGGACTCTTAGCTCAATCCTTCCCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

410

Amino Acids

44.86

Weight (kDa)

7.46

Isoelectric Point (pI)

62.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	166 - 209	3e-14	Ring finger domain
zf-RING_11	PF17123	166 - 195	1.1e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	167 - 208	9.7e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	167 - 208	1.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	169 - 209	5.2e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10380
fragaria_vesca	FvH4_1g20164
malus_domestica	MD01G1036900.v1.1 MD15G1317400.v1.1
prunus_persica	Prupe.6G194300_v2.0.a1
pyrus_communis	pycom01g06390 pycom15g27980
rosa_chinensis	RchiOBHm_Chr2g0112241
rosa_laevigata	RLG00000017962
rosa_multiflora	Rmu_co8477273.1_g000001 Rmu_sc0001386.1_g000026
rosa_roxburghii	Rroxscaffold_2G00131620
rosa_rugosa	Rorug02G0179300
rosa_samantha	Rh2AG231700 Rh2BG245200 Rh2CG236100 Rh2DG239600
rosa_wichuraiana	Rw2G017980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1138
AccB7I	CCANNNNNTGG	1 cut(s)	418
AccII	CGCG	1 cut(s)	627
AccIII	TCCGGA	1 cut(s)	1000
AciI	CCGC	6 cut(s)	158, 161, 164, 167, 625, 893
AclWI	GGATC	3 cut(s)	29, 381, 863
AcsI	RAATTY	2 cut(s)	721, 1018
AcuI	CTGAAG	1 cut(s)	933
AdeI	CACNNNGTG	1 cut(s)	418
AfaI	GTAC	4 cut(s)	407, 772, 793, 1032
AfiI	CCNNNNNNNGG	4 cut(s)	324, 418, 1007, 1052
AgsI	TTSAA	9 cut(s)	98, 221, 737, 746, 821, 828, 957, 969, 1116
AloI	GAACNNNNNNTCC	2 cut(s)	484, 516
AluBI	AGCT	2 cut(s)	1180, 1212
AluI	AGCT	2 cut(s)	1180, 1212
Alw26I	GTCTC	2 cut(s)	432, 542
AlwI	GGATC	3 cut(s)	29, 381, 863
Aor13HI	TCCGGA	1 cut(s)	1000
AoxI	GGCC	1 cut(s)	380
ApeKI	GCWGC	3 cut(s)	105, 647, 925
ApoI	RAATTY	2 cut(s)	721, 1018
Asp700I	GAANNNNTTC	3 cut(s)	360, 1111, 1181
AspLEI	GCGC	1 cut(s)	629
AspS9I	GGNCC	2 cut(s)	380, 753
AsuC2I	CCSGG	1 cut(s)	671
AsuII	TTCGAA	1 cut(s)	1016
AvaII	GGWCC	1 cut(s)	753
BanI	GGYRCC	1 cut(s)	1138
BbvCI	CCTCAGC	1 cut(s)	855
BbvI	GCAGC	3 cut(s)	92, 634, 937
BccI	CCATC	2 cut(s)	800, 1129
BclI	TGATCA	2 cut(s)	391, 655
BcnI	CCSGG	1 cut(s)	671
BcoDI	GTCTC	2 cut(s)	432, 542
BfaI	CTAG	3 cut(s)	201, 651, 1086
BfmI	CTRYAG	1 cut(s)	1130
BisI	GCNGC	8 cut(s)	106, 158, 161, 164, 167, 625, 648, 926
BlsI	GCNGC	8 cut(s)	107, 159, 162, 165, 168, 626, 649, 927
BmcAI	AGTACT	1 cut(s)	1032
Bme1390I	CCNGG	1 cut(s)	671
Bme18I	GGWCC	1 cut(s)	753
BmgT120I	GGNCC	2 cut(s)	380, 753
BmiI	GGNNCC	2 cut(s)	754, 1140
BmrFI	CCNGG	1 cut(s)	671
BmsI	GCATC	1 cut(s)	220
Bpu10I	CCTNAGC	1 cut(s)	855
Bpu14I	TTCGAA	1 cut(s)	1016
BpuEI	CTTGAG	1 cut(s)	532
BpuMI	CCSGG	1 cut(s)	671
BsaBI	GATNNNNATC	2 cut(s)	186, 372
BsaWI	WCCGGW	1 cut(s)	1000
Bsc4I	CCNNNNNNNGG	4 cut(s)	324, 418, 1007, 1052
Bse1I	ACTGG	1 cut(s)	756
Bse3DI	GCAATG	1 cut(s)	1155
Bse8I	GATNNNNATC	2 cut(s)	186, 372
BseAI	TCCGGA	1 cut(s)	1000
BseGI	GGATG	2 cut(s)	394, 408
BseJI	GATNNNNATC	2 cut(s)	186, 372
BseLI	CCNNNNNNNGG	4 cut(s)	324, 418, 1007, 1052
BseMI	GCAATG	1 cut(s)	1155
BseMII	CTCAG	3 cut(s)	443, 553, 846
BseNI	ACTGG	1 cut(s)	756
BseRI	GAGGAG	1 cut(s)	340
BseXI	GCAGC	3 cut(s)	92, 634, 937
BsgI	GTGCAG	1 cut(s)	944
Bsh1236I	CGCG	1 cut(s)	627
BshFI	GGCC	1 cut(s)	382
BshNI	GGYRCC	1 cut(s)	1138
BsiSI	CCGG	2 cut(s)	671, 1001
BslFI	GGGAC	3 cut(s)	505, 653, 766
BslI	CCNNNNNNNGG	4 cut(s)	324, 418, 1007, 1052
BsmAI	GTCTC	2 cut(s)	432, 542
BsmFI	GGGAC	3 cut(s)	505, 653, 766
BsmI	GAATGC	1 cut(s)	708
BsnI	GGCC	1 cut(s)	382
Bsp119I	TTCGAA	1 cut(s)	1016
Bsp13I	TCCGGA	1 cut(s)	1000
Bsp143I	GATC	8 cut(s)	34, 45, 329, 373, 391, 599, 655, 868
BspACI	CCGC	6 cut(s)	158, 161, 164, 167, 625, 893
BspANI	GGCC	1 cut(s)	382
BspCNI	CTCAG	3 cut(s)	442, 552, 847
BspEI	TCCGGA	1 cut(s)	1000
BspFNI	CGCG	1 cut(s)	627
BspLI	GGNNCC	2 cut(s)	754, 1140
BspMAI	CTGCAG	1 cut(s)	1134
BspPI	GGATC	3 cut(s)	29, 381, 863
BspT104I	TTCGAA	1 cut(s)	1016
BspT107I	GGYRCC	1 cut(s)	1138
BsrDI	GCAATG	1 cut(s)	1155
BsrI	ACTGG	1 cut(s)	756
BssMI	GATC	8 cut(s)	34, 45, 329, 373, 391, 599, 655, 868
Bst4CI	ACNGT	3 cut(s)	418, 454, 796
Bst6I	CTCTTC	2 cut(s)	141, 267
BstAPI	GCANNNNNTGC	2 cut(s)	114, 1138
BstBI	TTCGAA	1 cut(s)	1016
BstDEI	CTNAG	7 cut(s)	56, 171, 429, 539, 855, 1095, 1208
BstF5I	GGATG	2 cut(s)	394, 408
BstFNI	CGCG	1 cut(s)	627
BstHHI	GCGC	1 cut(s)	629
BstKTI	GATC	8 cut(s)	37, 48, 332, 376, 394, 602, 658, 871
BstMAI	GTCTC	2 cut(s)	432, 542
BstMBI	GATC	8 cut(s)	34, 45, 329, 373, 391, 599, 655, 868
BstMWI	GCNNNNNNNGC	5 cut(s)	114, 163, 166, 621, 1138
BstSCI	CCNGG	1 cut(s)	669
BstSFI	CTRYAG	1 cut(s)	1130
BstUI	CGCG	1 cut(s)	627
BstV1I	GCAGC	3 cut(s)	92, 634, 937
BsuRI	GGCC	1 cut(s)	382
BtsCI	GGATG	2 cut(s)	394, 408
BtsIMutI	CAGTG	2 cut(s)	763, 954
CfoI	GCGC	1 cut(s)	629
Cfr13I	GGNCC	2 cut(s)	380, 753
Csp6I	GTAC	4 cut(s)	406, 771, 792, 1031
CviAII	CATG	4 cut(s)	377, 563, 591, 879
CviQI	GTAC	4 cut(s)	406, 771, 792, 1031
DdeI	CTNAG	7 cut(s)	56, 171, 429, 539, 855, 1095, 1208
DpnI	GATC	8 cut(s)	36, 47, 331, 375, 393, 601, 657, 870
DpnII	GATC	8 cut(s)	34, 45, 329, 373, 391, 599, 655, 868
DraIII	CACNNNGTG	1 cut(s)	418
Eam1104I	CTCTTC	2 cut(s)	141, 267
EarI	CTCTTC	2 cut(s)	141, 267
EciI	GGCGGA	1 cut(s)	908
Eco47I	GGWCC	1 cut(s)	753
Eco57I	CTGAAG	1 cut(s)	933
EcoRI	GAATTC	1 cut(s)	1018
FaeI	CATG	4 cut(s)	380, 566, 594, 882
FalI	AAGNNNNNCTT	2 cut(s)	348, 380
FaqI	GGGAC	3 cut(s)	505, 653, 766
FatI	CATG	4 cut(s)	376, 562, 590, 878
FbaI	TGATCA	2 cut(s)	391, 655
Fnu4HI	GCNGC	8 cut(s)	106, 158, 161, 164, 167, 625, 648, 926
FokI	GGATG	2 cut(s)	381, 395
Fsp4HI	GCNGC	8 cut(s)	106, 158, 161, 164, 167, 625, 648, 926
FspBI	CTAG	3 cut(s)	201, 651, 1086
GlaI	GCGC	1 cut(s)	628
GluI	GCNGC	8 cut(s)	106, 158, 161, 164, 167, 625, 648, 926
HaeIII	GGCC	1 cut(s)	382
HapII	CCGG	2 cut(s)	671, 1001
HhaI	GCGC	1 cut(s)	629
Hin1II	CATG	4 cut(s)	380, 566, 594, 882
Hin6I	GCGC	1 cut(s)	627
HinP1I	GCGC	1 cut(s)	627
HindIII	AAGCTT	1 cut(s)	1178
HpaII	CCGG	2 cut(s)	671, 1001
Hpy166II	GTNNAC	3 cut(s)	31, 53, 345
Hpy188I	TCNGA	6 cut(s)	216, 309, 355, 633, 873, 1065
Hpy188III	TCNNGA	8 cut(s)	28, 38, 95, 140, 365, 389, 969, 1001
Hpy8I	GTNNAC	3 cut(s)	31, 53, 345
HpyAV	CCTTC	4 cut(s)	315, 731, 1194, 1229
HpyCH4III	ACNGT	3 cut(s)	418, 454, 796
HpyCH4V	TGCA	4 cut(s)	108, 925, 1079, 1132
HpyF10VI	GCNNNNNNNGC	5 cut(s)	114, 163, 166, 621, 1138
HpyF3I	CTNAG	7 cut(s)	56, 171, 429, 539, 855, 1095, 1208
Hsp92II	CATG	4 cut(s)	380, 566, 594, 882
HspAI	GCGC	1 cut(s)	627
Kpn2I	TCCGGA	1 cut(s)	1000
Ksp22I	TGATCA	2 cut(s)	391, 655
Kzo9I	GATC	8 cut(s)	34, 45, 329, 373, 391, 599, 655, 868
LmnI	GCTCC	2 cut(s)	634, 882
Lsp1109I	GCAGC	3 cut(s)	92, 634, 937
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	3 cut(s)	201, 651, 1086
MaeIII	GTNAC	2 cut(s)	62, 907
MalI	GATC	8 cut(s)	36, 47, 331, 375, 393, 601, 657, 870
MboI	GATC	8 cut(s)	34, 45, 329, 373, 391, 599, 655, 868
MboII	GAAGA	8 cut(s)	16, 128, 254, 257, 368, 539, 926, 1104
MluCI	AATT	8 cut(s)	438, 610, 721, 841, 847, 930, 1018, 1025
MlyI	GAGTC	3 cut(s)	313, 544, 1198
MmeI	TCCRAC	1 cut(s)	287
MroI	TCCGGA	1 cut(s)	1000
MroXI	GAANNNNTTC	3 cut(s)	360, 1111, 1181
MseI	TTAA	1 cut(s)	437
MslI	CAYNNNNRTG	1 cut(s)	713
MspI	CCGG	2 cut(s)	671, 1001
MspR9I	CCNGG	1 cut(s)	671
Mva1269I	GAATGC	1 cut(s)	708
MvnI	CGCG	1 cut(s)	627
MwoI	GCNNNNNNNGC	5 cut(s)	114, 163, 166, 621, 1138
NciI	CCSGG	1 cut(s)	671
NdeII	GATC	8 cut(s)	34, 45, 329, 373, 391, 599, 655, 868
NlaIII	CATG	4 cut(s)	380, 566, 594, 882
NlaIV	GGNNCC	2 cut(s)	754, 1140
NmuCI	GTSAC	2 cut(s)	62, 907
NspV	TTCGAA	1 cut(s)	1016
PctI	GAATGC	1 cut(s)	708
PdmI	GAANNNNTTC	3 cut(s)	360, 1111, 1181
PfeI	GAWTC	7 cut(s)	217, 294, 337, 443, 674, 953, 1042
PflMI	CCANNNNNTGG	1 cut(s)	418
PfoI	TCCNGGA	1 cut(s)	669
PkrI	GCNGC	8 cut(s)	107, 159, 162, 165, 168, 626, 649, 927
PleI	GAGTC	3 cut(s)	312, 543, 1198
PpsI	GAGTC	3 cut(s)	312, 543, 1198
PspN4I	GGNNCC	2 cut(s)	754, 1140
PspPI	GGNCC	2 cut(s)	380, 753
PstI	CTGCAG	1 cut(s)	1134
RsaI	GTAC	4 cut(s)	407, 772, 793, 1032
RsaNI	GTAC	4 cut(s)	406, 771, 792, 1031
RseI	CAYNNNNRTG	1 cut(s)	713
SaqAI	TTAA	1 cut(s)	437
SatI	GCNGC	8 cut(s)	106, 158, 161, 164, 167, 625, 648, 926
Sau3AI	GATC	8 cut(s)	34, 45, 329, 373, 391, 599, 655, 868
Sau96I	GGNCC	2 cut(s)	380, 753
ScaI	AGTACT	1 cut(s)	1032
SchI	GAGTC	3 cut(s)	313, 544, 1198
ScrFI	CCNGG	1 cut(s)	671
SetI	ASST	7 cut(s)	103, 151, 765, 834, 941, 1182, 1214
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	1 cut(s)	1130
SfuI	TTCGAA	1 cut(s)	1016
SinI	GGWCC	1 cut(s)	753
SmiMI	CAYNNNNRTG	1 cut(s)	713
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
Sse9I	AATT	8 cut(s)	438, 610, 721, 841, 847, 930, 1018, 1025
SsiI	CCGC	6 cut(s)	158, 161, 164, 167, 625, 893
SspMI	CTAG	3 cut(s)	201, 651, 1086
StyD4I	CCNGG	1 cut(s)	669
TaaI	ACNGT	3 cut(s)	418, 454, 796
TaqI	TCGA	5 cut(s)	302, 677, 800, 1016, 1190
TasI	AATT	8 cut(s)	438, 610, 721, 841, 847, 930, 1018, 1025
TatI	WGTACW	3 cut(s)	770, 791, 1030
TauI	GCSGC	5 cut(s)	160, 163, 166, 169, 627
TfiI	GAWTC	7 cut(s)	217, 294, 337, 443, 674, 953, 1042
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TscAI	CASTG	2 cut(s)	763, 954
TseFI	GTSAC	2 cut(s)	62, 907
TseI	GCWGC	3 cut(s)	105, 647, 925
Tsp45I	GTSAC	2 cut(s)	62, 907
TspDTI	ATGAA	2 cut(s)	560, 1166
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	2 cut(s)	763, 954
Van91I	CCANNNNNTGG	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	753
XapI	RAATTY	2 cut(s)	721, 1018
XmnI	GAANNNNTTC	3 cut(s)	360, 1111, 1181
XspI	CTAG	3 cut(s)	201, 651, 1086
ZrmI	AGTACT	1 cut(s)	1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.