Rh2BG245200

RING-H2 finger protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
24945249 .. 24947138
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG245200.1

Sequence Viewer

Length: 1278 bp
ATGGGGTTTTCTCAGAGAAATCTCCTCCCAGGAAACATCTTTAACGATCCAGGTGAAGCCTTCTGTAAACCTAGTTGTGACCCAAATCTAAATAAACAAGGCTTGTGTGTTGAATCTTGCCGCAAAATCTGCCCAAAAGTCTGTAAATTTTCTGTGGGTGATGATGATAATCGTCCAAATTTACCAGCTTTTCCTGACCCGCCGCCGCCGCCGCCGCCTGAGGTGGTTGAGACTAGACCAGACTATACTGGCCAGAAGCATCTGATCCAAACGAGTATGATAGTTGGGTCCTGTATGATCGGGGCTTCTCTTTTTCTCTGTATTGTTTTTGCAATTATGAGATACTATTCGAGGCGGAGAAATCCCAGAAGGAGAAGCCCGCCGATTCTGTTTGCTACGGCGGAAGATTTTCTTGATGAGGATCATGGGCCTGTGCTTGATCACCCCATTTGGTACATCCACACTGTGGGTCTGTCTCAGGCTTTGATCGATTCCATTACAGTTTGTAAGTATAGAAAAGATGAGGGTTTGATTGAGGGGACGGATTGTTCTGTTTGCTTGAGTGAGTTTGAGGAAGATGAGAGTCTCAGGCTTTTGCCAAAGTGTAGTCATGCTTTTCACATCCCTTGTATTGATACATGGTTGAGATCACATAAGAATTGCCCTCTTTGCCGCGCTCCGATTGTTTGTGGTGCTGCTAGTGATCAAGTGGGTGTCCCGGATTCAGTTGCGAGTGGTTCGGGTTCTGGGGAGAGCATTCCGGTGGAGAATTTGGAGAGTGTTGAAGGGATTGGAAGAGGGACTAGTGAGGTTGGAAGTACAGATGATGAGAATGTCGGTGCAAATTCTGTTGATCGAAGGAGTGTTGAAAGTTCAAAGGTTTTGCCTAATTCTATTTTGGCTGAGGGAAGTTCTGATCCAAGAGCATTGAGCGATTTGGCGGATAATAGACGAGTGACTGAAGATGATGTACAGCCAATGAGGAGGTCAGTGTCGGTGGATTCAGTGTCTGCTTCAAGAATATATCATGCTGTGGCCAATGCTATTCCGGAACAAGGAAGTTCGAATTCCCAATTAGTACTTGTAAAGAATCCAAAGTTGGGGATTGTTCCGAAGCAGGACAGTGCAAGTTCTAGCCTATCCAAGCATTGGAGAAGTTCTTCAAATGGTCTTTCTCTGCAGATGGTGCCAATGGCAATGAAAAGGCCTTTCCCCTCTGGCAGGAAGCTTTTCTCATCGAAACACAGAAGGACTCTTAGCTCAATCCTTCCCTTATGA

Protein Analysis

425

Amino Acids

46.34

Weight (kDa)

6.38

Isoelectric Point (pI)

59.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 182 - 225 3.1e-14 Ring finger domain
zf-RING_11 PF17123 182 - 211 1.2e-10 RING-like zinc finger
zf-C3HC4_2 PF13923 183 - 224 1e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 183 - 224 1.6e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 185 - 225 5.8e-09 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012774)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1186
AccB7I CCANNNNNTGG 2 cut(s) 466, 1149
AccII CGCG 1 cut(s) 675
AccIII TCCGGA 1 cut(s) 1048
AclWI GGATC 4 cut(s) 41, 259, 429, 911
AcoI YGGCCR 2 cut(s) 250, 1035
AcsI RAATTY 5 cut(s) 146, 178, 769, 844, 1066
AcuI CTGAAG 1 cut(s) 981
AdeI CACNNNGTG 1 cut(s) 466
AfaI GTAC 4 cut(s) 455, 820, 972, 1080
AfiI CCNNNNNNNGG 5 cut(s) 466, 1055, 1100, 1149, 1221
AgsI TTSAA 6 cut(s) 113, 785, 869, 876, 1017, 1164
AhlI ACTAGT 1 cut(s) 803
AjnI CCWGG 2 cut(s) 28, 49
AjuI GAANNNNNNNTTGG 2 cut(s) 1082, 1114
AloI GAACNNNNNNTCC 2 cut(s) 532, 564
AluBI AGCT 3 cut(s) 188, 1228, 1260
AluI AGCT 3 cut(s) 188, 1228, 1260
Alw26I GTCTC 3 cut(s) 224, 480, 590
AlwI GGATC 4 cut(s) 41, 259, 429, 911
AlwNI CAGNNNCTG 1 cut(s) 1010
Aor13HI TCCGGA 1 cut(s) 1048
AoxI GGCC 4 cut(s) 250, 428, 1035, 1205
ApeKI GCWGC 1 cut(s) 695
ApoI RAATTY 5 cut(s) 146, 178, 769, 844, 1066
Asp700I GAANNNNTTC 3 cut(s) 408, 1159, 1229
AspLEI GCGC 1 cut(s) 677
AspS9I GGNCC 2 cut(s) 288, 428
AsuC2I CCSGG 1 cut(s) 719
AsuHPI GGTGA 3 cut(s) 65, 170, 434
AsuII TTCGAA 1 cut(s) 1064
AvaII GGWCC 1 cut(s) 288
AxyI CCTNAGG 1 cut(s) 219
BalI TGGCCA 2 cut(s) 252, 1037
BanI GGYRCC 1 cut(s) 1186
BarI GAAGNNNNNNTAC 2 cut(s) 954, 986
BbvCI CCTCAGC 1 cut(s) 903
BbvI GCAGC 1 cut(s) 682
BccI CCATC 1 cut(s) 1177
BceAI ACGGC 1 cut(s) 414
BciT130I CCWGG 2 cut(s) 30, 51
BclI TGATCA 2 cut(s) 439, 703
BcnI CCSGG 1 cut(s) 719
BcoDI GTCTC 3 cut(s) 224, 480, 590
BcuI ACTAGT 1 cut(s) 803
BfaI CTAG 5 cut(s) 72, 234, 699, 804, 1134
BfmI CTRYAG 1 cut(s) 1178
BisI GCNGC 8 cut(s) 121, 203, 206, 209, 212, 215, 673, 696
BlsI GCNGC 8 cut(s) 122, 204, 207, 210, 213, 216, 674, 697
BmcAI AGTACT 1 cut(s) 1080
Bme1390I CCNGG 3 cut(s) 30, 51, 719
Bme18I GGWCC 1 cut(s) 288
BmgT120I GGNCC 2 cut(s) 288, 428
BmiI GGNNCC 2 cut(s) 289, 1188
BmrFI CCNGG 3 cut(s) 30, 51, 719
BmsI GCATC 1 cut(s) 268
Bpu10I CCTNAGC 1 cut(s) 903
Bpu14I TTCGAA 1 cut(s) 1064
BpuEI CTTGAG 1 cut(s) 580
BpuMI CCSGG 1 cut(s) 719
Bsa29I ATCGAT 1 cut(s) 489
BsaBI GATNNNNATC 2 cut(s) 168, 420
BsaJI CCNNGG 1 cut(s) 28
BsaWI WCCGGW 2 cut(s) 760, 1048
Bsc4I CCNNNNNNNGG 5 cut(s) 466, 1055, 1100, 1149, 1221
Bse1I ACTGG 1 cut(s) 253
Bse21I CCTNAGG 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 1203
Bse8I GATNNNNATC 2 cut(s) 168, 420
BseAI TCCGGA 1 cut(s) 1048
BseBI CCWGG 2 cut(s) 30, 51
BseCI ATCGAT 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 2 cut(s) 456, 621
BseJI GATNNNNATC 2 cut(s) 168, 420
BseLI CCNNNNNNNGG 5 cut(s) 466, 1055, 1100, 1149, 1221
BseMI GCAATG 1 cut(s) 1203
BseMII CTCAG 5 cut(s) 26, 210, 491, 601, 894
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 2 cut(s) 14, 997
BseXI GCAGC 1 cut(s) 682
Bsh1236I CGCG 1 cut(s) 675
BshFI GGCC 4 cut(s) 252, 430, 1037, 1207
BshNI GGYRCC 1 cut(s) 1186
BshVI ATCGAT 1 cut(s) 489
BsiSI CCGG 3 cut(s) 719, 761, 1049
BslFI GGGAC 3 cut(s) 553, 701, 814
BslI CCNNNNNNNGG 5 cut(s) 466, 1055, 1100, 1149, 1221
BsmAI GTCTC 3 cut(s) 224, 480, 590
BsmFI GGGAC 3 cut(s) 553, 701, 814
BsmI GAATGC 1 cut(s) 756
BsnI GGCC 4 cut(s) 252, 430, 1037, 1207
Bsp119I TTCGAA 1 cut(s) 1064
Bsp13I TCCGGA 1 cut(s) 1048
Bsp1407I TGTACA 1 cut(s) 970
BspANI GGCC 4 cut(s) 252, 430, 1037, 1207
BspCNI CTCAG 5 cut(s) 25, 211, 490, 600, 895
BspDI ATCGAT 1 cut(s) 489
BspEI TCCGGA 1 cut(s) 1048
BspFNI CGCG 1 cut(s) 675
BspLI GGNNCC 2 cut(s) 289, 1188
BspMAI CTGCAG 1 cut(s) 1182
BspPI GGATC 4 cut(s) 41, 259, 429, 911
BspT104I TTCGAA 1 cut(s) 1064
BspT107I GGYRCC 1 cut(s) 1186
BsrDI GCAATG 1 cut(s) 1203
BsrGI TGTACA 1 cut(s) 970
BsrI ACTGG 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 28
Bst2UI CCWGG 2 cut(s) 30, 51
Bst4CI ACNGT 3 cut(s) 466, 502, 1124
Bst6I CTCTTC 1 cut(s) 790
BstAPI GCANNNNNTGC 2 cut(s) 129, 1186
BstAUI TGTACA 1 cut(s) 970
BstBI TTCGAA 1 cut(s) 1064
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 6 cut(s) 12, 219, 477, 587, 903, 1256
BstENI CCTNNNNNAGG 1 cut(s) 1219
BstF5I GGATG 2 cut(s) 456, 621
BstFNI CGCG 1 cut(s) 675
BstHHI GCGC 1 cut(s) 677
BstMAI GTCTC 3 cut(s) 224, 480, 590
BstMWI GCNNNNNNNGC 6 cut(s) 129, 208, 211, 214, 669, 1186
BstNI CCWGG 2 cut(s) 30, 51
BstSCI CCNGG 3 cut(s) 28, 49, 717
BstSFI CTRYAG 1 cut(s) 1178
BstUI CGCG 1 cut(s) 675
BstV1I GCAGC 1 cut(s) 682
Bsu15I ATCGAT 1 cut(s) 489
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 4 cut(s) 252, 430, 1037, 1207
BsuTUI ATCGAT 1 cut(s) 489
BtsCI GGATG 2 cut(s) 456, 621
BtsIMutI CAGTG 4 cut(s) 462, 996, 1011, 1129
Cac8I GCNNGC 1 cut(s) 380
CaiI CAGNNNCTG 1 cut(s) 1010
CfoI GCGC 1 cut(s) 677
Cfr13I GGNCC 2 cut(s) 288, 428
ClaI ATCGAT 1 cut(s) 489
Csp6I GTAC 4 cut(s) 454, 819, 971, 1079
CviAII CATG 4 cut(s) 425, 611, 639, 1028
CviQI GTAC 4 cut(s) 454, 819, 971, 1079
DdeI CTNAG 6 cut(s) 12, 219, 477, 587, 903, 1256
DraIII CACNNNGTG 1 cut(s) 466
EaeI YGGCCR 2 cut(s) 250, 1035
Eam1104I CTCTTC 1 cut(s) 790
EarI CTCTTC 1 cut(s) 790
EciI GGCGGA 3 cut(s) 370, 416, 956
Eco147I AGGCCT 1 cut(s) 1207
Eco47I GGWCC 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 981
Eco81I CCTNAGG 1 cut(s) 219
EcoNI CCTNNNNNAGG 1 cut(s) 1219
EcoO109I RGGNCCY 1 cut(s) 288
EcoRI GAATTC 1 cut(s) 1066
EcoRII CCWGG 2 cut(s) 28, 49
FaeI CATG 4 cut(s) 428, 614, 642, 1031
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FaqI GGGAC 3 cut(s) 553, 701, 814
FatI CATG 4 cut(s) 424, 610, 638, 1027
FauI CCCGC 2 cut(s) 207, 387
FbaI TGATCA 2 cut(s) 439, 703
Fnu4HI GCNGC 8 cut(s) 121, 203, 206, 209, 212, 215, 673, 696
FokI GGATG 2 cut(s) 443, 608
Fsp4HI GCNGC 8 cut(s) 121, 203, 206, 209, 212, 215, 673, 696
FspBI CTAG 5 cut(s) 72, 234, 699, 804, 1134
GlaI GCGC 1 cut(s) 676
GluI GCNGC 8 cut(s) 121, 203, 206, 209, 212, 215, 673, 696
HaeIII GGCC 4 cut(s) 252, 430, 1037, 1207
HapII CCGG 3 cut(s) 719, 761, 1049
HhaI GCGC 1 cut(s) 677
Hin1II CATG 4 cut(s) 428, 614, 642, 1031
Hin6I GCGC 1 cut(s) 675
HinP1I GCGC 1 cut(s) 675
HindIII AAGCTT 1 cut(s) 1226
HinfI GANTC 8 cut(s) 113, 385, 491, 583, 722, 1001, 1090, 1252
HpaII CCGG 3 cut(s) 719, 761, 1049
HphI GGTGA 3 cut(s) 65, 170, 434
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 5 cut(s) 15, 264, 681, 916, 1113
Hpy188III TCNNGA 4 cut(s) 194, 413, 1017, 1049
Hpy8I GTNNAC 1 cut(s) 68
HpyAV CCTTC 6 cut(s) 70, 363, 779, 852, 1242, 1277
HpyCH4III ACNGT 3 cut(s) 466, 502, 1124
HpyCH4V TGCA 4 cut(s) 332, 842, 1127, 1180
HpyF10VI GCNNNNNNNGC 6 cut(s) 129, 208, 211, 214, 669, 1186
HpyF3I CTNAG 6 cut(s) 12, 219, 477, 587, 903, 1256
Hsp92II CATG 4 cut(s) 428, 614, 642, 1031
HspAI GCGC 1 cut(s) 675
Kpn2I TCCGGA 1 cut(s) 1048
Ksp22I TGATCA 2 cut(s) 439, 703
LmnI GCTCC 1 cut(s) 682
Lsp1109I GCAGC 1 cut(s) 682
LweI GCATC 1 cut(s) 268
MaeI CTAG 5 cut(s) 72, 234, 699, 804, 1134
MaeIII GTNAC 2 cut(s) 77, 955
MboII GAAGA 5 cut(s) 416, 587, 807, 974, 1152
MlsI TGGCCA 2 cut(s) 252, 1037
MluCI AATT 9 cut(s) 146, 178, 333, 658, 769, 844, 889, 1066, 1073
MluNI TGGCCA 2 cut(s) 252, 1037
MlyI GAGTC 2 cut(s) 592, 1246
MmeI TCCRAC 1 cut(s) 793
Mox20I TGGCCA 2 cut(s) 252, 1037
MroI TCCGGA 1 cut(s) 1048
MroXI GAANNNNTTC 3 cut(s) 408, 1159, 1229
MscI TGGCCA 2 cut(s) 252, 1037
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 761
Msp20I TGGCCA 2 cut(s) 252, 1037
MspI CCGG 3 cut(s) 719, 761, 1049
MspR9I CCNGG 3 cut(s) 30, 51, 719
Mva1269I GAATGC 1 cut(s) 756
MvaI CCWGG 2 cut(s) 30, 51
MvnI CGCG 1 cut(s) 675
MwoI GCNNNNNNNGC 6 cut(s) 129, 208, 211, 214, 669, 1186
NciI CCSGG 1 cut(s) 719
NlaIII CATG 4 cut(s) 428, 614, 642, 1031
NlaIV GGNNCC 2 cut(s) 289, 1188
NmuCI GTSAC 2 cut(s) 77, 955
NspV TTCGAA 1 cut(s) 1064
PceI AGGCCT 1 cut(s) 1207
PctI GAATGC 1 cut(s) 756
PdmI GAANNNNTTC 3 cut(s) 408, 1159, 1229
PfeI GAWTC 6 cut(s) 113, 385, 491, 722, 1001, 1090
PflMI CCANNNNNTGG 2 cut(s) 466, 1149
PfoI TCCNGGA 1 cut(s) 717
PkrI GCNGC 8 cut(s) 122, 204, 207, 210, 213, 216, 674, 697
PleI GAGTC 2 cut(s) 591, 1246
PpsI GAGTC 2 cut(s) 591, 1246
PpuMI RGGWCCY 1 cut(s) 288
Psp5II RGGWCCY 1 cut(s) 288
Psp6I CCWGG 2 cut(s) 28, 49
PspGI CCWGG 2 cut(s) 28, 49
PspN4I GGNNCC 2 cut(s) 289, 1188
PspPI GGNCC 2 cut(s) 288, 428
PspPPI RGGWCCY 1 cut(s) 288
PstI CTGCAG 1 cut(s) 1182
PstNI CAGNNNCTG 1 cut(s) 1010
RsaI GTAC 4 cut(s) 455, 820, 972, 1080
RsaNI GTAC 4 cut(s) 454, 819, 971, 1079
RseI CAYNNNNRTG 1 cut(s) 761
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 8 cut(s) 121, 203, 206, 209, 212, 215, 673, 696
Sau96I GGNCC 2 cut(s) 288, 428
ScaI AGTACT 1 cut(s) 1080
SchI GAGTC 2 cut(s) 592, 1246
ScrFI CCNGG 3 cut(s) 30, 51, 719
SetI ASST 9 cut(s) 55, 73, 190, 225, 813, 882, 989, 1230, 1262
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 1178
SfuI TTCGAA 1 cut(s) 1064
SinI GGWCC 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 761
SmlI CTYRAG 1 cut(s) 559
SmoI CTYRAG 1 cut(s) 559
SpeI ACTAGT 1 cut(s) 803
Sse9I AATT 9 cut(s) 146, 178, 333, 658, 769, 844, 889, 1066, 1073
SseBI AGGCCT 1 cut(s) 1207
SspMI CTAG 5 cut(s) 72, 234, 699, 804, 1134
StuI AGGCCT 1 cut(s) 1207
StyD4I CCNGG 3 cut(s) 28, 49, 717
TaaI ACNGT 3 cut(s) 466, 502, 1124
TaqI TCGA 5 cut(s) 350, 489, 856, 1064, 1238
TasI AATT 9 cut(s) 146, 178, 333, 658, 769, 844, 889, 1066, 1073
TatI WGTACW 3 cut(s) 818, 970, 1078
TauI GCSGC 7 cut(s) 123, 205, 208, 211, 214, 217, 675
TfiI GAWTC 6 cut(s) 113, 385, 491, 722, 1001, 1090
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 4 cut(s) 469, 996, 1011, 1129
TseFI GTSAC 2 cut(s) 77, 955
TseI GCWGC 1 cut(s) 695
Tsp45I GTSAC 2 cut(s) 77, 955
TspDTI ATGAA 1 cut(s) 1214
TspGWI ACGGA 1 cut(s) 557
TspRI CASTG 4 cut(s) 469, 996, 1011, 1129
Van91I CCANNNNNTGG 2 cut(s) 466, 1149
VpaK11BI GGWCC 1 cut(s) 288
XagI CCTNNNNNAGG 1 cut(s) 1219
XapI RAATTY 5 cut(s) 146, 178, 769, 844, 1066
XmnI GAANNNNTTC 3 cut(s) 408, 1159, 1229
XspI CTAG 5 cut(s) 72, 234, 699, 804, 1134
ZrmI AGTACT 1 cut(s) 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.