Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0012774

Physical Location & Seq

Genomic Coordinates Reverse (-)

24268321 .. 24272369

Gene Structure 4049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG239600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGGGTTTTCTCAGAGAAAGCTCCTCCCAGGAAACATCTTTAACGATCCAGGTAAAGCCTTCTGTAAACCTAGTTGTGACCCAAATCTAAATAAACAAGGCTTGTGTGATGAATCTTGCCGCAAAATCTGCTCAACAGTCTGTAAATTTTCTGTGGGTGATAATGATCTTCCAAATTTACCAGCTTTTCCTGACGCACCTCTACTACCGCCGCCGCCGCCGCCTGAGGTGGTTGATTCTAGACCAGACTATACTGGCCAGAAGCATCTGATCCAAACGAGTATGATAGTTGGGTCCTGTATGATCGGGGCTTCTCTTTTTCTCTGTATTGTTTTTGCAATTATGAGATACTATTCGAGGCGGAGAAATCCCAGAAGGAGAAGCCCGCCGATTCTGTTTGCTACGGCGGAAGATTTTCTTGATGAGGATCATGGGCCTGTGCTTGATCACCCCATTTGGTACATCCACACTGTGGGTCTGTCTCAGGCTTTGATCGATTCCATTACAGTTTGTAAGTATAGAAAAGATGAGGGTTTGATTGAGGGGACGGATTGTTCTGTTTGCTTGAGTGAGTTTGAGGAAGATGAGAGTCTCAGGCTTTTGCCAAAGTGTAGTCATGCTTTTCACATCCCTTGTATTGATACATGGTTGAGATCACATAAGAATTGCCCTCTTTGCCGCGCTCCGATTGTTTGTGGTGCTGCTAGTGATCAAGTGGGTGTCCCGGATTCAGTTGCGAGTGGTTCGGGTTCTGGGGAGAGCATTCGGGTGGAGAATTTGGAGAGTGTTGAAGGGATTGGAAGAGGGACTAGTGAGGTTGGAGGTACAGATGATGAGAATGTCGGTGCAAATTCTGTTGATGGAAGGAGTGTTGAAAGTTCAAAGGTTTTGCCTAATTCTATTTTGGCTGAGGGAAGTTCTGATCCAAGAGCATTGAGCGATTTGGCGGATAATAGACGAGTGACTGAAGATGATGTACAGCCAATGAGGAGGTCAGTGTCGGTGGATTCAGTGTCTGCTTCAAGAATATATCATGCCGTGGCCAATGCTATTCTGGAACAAGGAAGTTCGAATTCCCAATTAGTACTTGTAAAGAATCCAAAGTTGGGGATTGTTCCGAAGCAGGACAGTGCAAGTTCTAGCCTATCCAAGCATTGGAGAAGTTCTTCAAATGGTCTTTCTCTGCAGATGGTGCCAATGGCAATGAAAAGGCCTTTCCCCTCTGGCAGGAAGCTTTTCTCATCGAAACACAGAAGGACTCTTAGCTCAATCCTTCCCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

427

Amino Acids

46.39

Weight (kDa)

6.56

Isoelectric Point (pI)

59.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	184 - 227	3.2e-14	Ring finger domain
zf-RING_11	PF17123	184 - 213	1.2e-10	RING-like zinc finger
zf-C3HC4	PF00097	185 - 226	1.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	185 - 226	1e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	187 - 227	5.9e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10380
fragaria_vesca	FvH4_1g20164
malus_domestica	MD01G1036900.v1.1 MD15G1317400.v1.1
prunus_persica	Prupe.6G194300_v2.0.a1
pyrus_communis	pycom01g06390 pycom15g27980
rosa_chinensis	RchiOBHm_Chr2g0112241
rosa_laevigata	RLG00000017962
rosa_multiflora	Rmu_co8477273.1_g000001 Rmu_sc0001386.1_g000026
rosa_roxburghii	Rroxscaffold_2G00131620
rosa_rugosa	Rorug02G0179300
rosa_samantha	Rh2AG231700 Rh2BG245200 Rh2CG236100 Rh2DG239600
rosa_wichuraiana	Rw2G017980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1192
AccB7I	CCANNNNNTGG	2 cut(s)	472, 1155
AccII	CGCG	1 cut(s)	681
AclWI	GGATC	4 cut(s)	41, 265, 435, 917
AcoI	YGGCCR	2 cut(s)	256, 1041
AcsI	RAATTY	5 cut(s)	146, 175, 775, 850, 1072
AcuI	CTGAAG	1 cut(s)	987
AdeI	CACNNNGTG	1 cut(s)	472
AfaI	GTAC	4 cut(s)	461, 826, 978, 1086
AfiI	CCNNNNNNNGG	4 cut(s)	472, 1106, 1155, 1227
AgsI	TTSAA	5 cut(s)	791, 875, 882, 1023, 1170
AhlI	ACTAGT	1 cut(s)	809
AjnI	CCWGG	2 cut(s)	28, 49
AjuI	GAANNNNNNNTTGG	2 cut(s)	1088, 1120
AloI	GAACNNNNNNTCC	2 cut(s)	538, 570
AluBI	AGCT	4 cut(s)	22, 185, 1234, 1266
AluI	AGCT	4 cut(s)	22, 185, 1234, 1266
Alw26I	GTCTC	2 cut(s)	486, 596
AlwI	GGATC	4 cut(s)	41, 265, 435, 917
AlwNI	CAGNNNCTG	1 cut(s)	1016
AoxI	GGCC	4 cut(s)	256, 434, 1041, 1211
ApeKI	GCWGC	1 cut(s)	701
ApoI	RAATTY	5 cut(s)	146, 175, 775, 850, 1072
Asp700I	GAANNNNTTC	3 cut(s)	414, 1165, 1235
AspLEI	GCGC	1 cut(s)	683
AspS9I	GGNCC	2 cut(s)	294, 434
AsuC2I	CCSGG	1 cut(s)	725
AsuHPI	GGTGA	2 cut(s)	170, 440
AsuII	TTCGAA	1 cut(s)	1070
AvaII	GGWCC	1 cut(s)	294
AxyI	CCTNAGG	1 cut(s)	225
BalI	TGGCCA	2 cut(s)	258, 1043
BanI	GGYRCC	1 cut(s)	1192
BarI	GAAGNNNNNNTAC	2 cut(s)	960, 992
BbvCI	CCTCAGC	1 cut(s)	909
BbvI	GCAGC	1 cut(s)	688
BccI	CCATC	2 cut(s)	854, 1183
BceAI	ACGGC	2 cut(s)	420, 1022
BciT130I	CCWGG	2 cut(s)	30, 51
BclI	TGATCA	2 cut(s)	445, 709
BcnI	CCSGG	1 cut(s)	725
BcoDI	GTCTC	2 cut(s)	486, 596
BcuI	ACTAGT	1 cut(s)	809
BfaI	CTAG	5 cut(s)	72, 240, 705, 810, 1140
BfmI	CTRYAG	1 cut(s)	1184
BisI	GCNGC	7 cut(s)	121, 212, 215, 218, 221, 679, 702
BlsI	GCNGC	7 cut(s)	122, 213, 216, 219, 222, 680, 703
BmcAI	AGTACT	1 cut(s)	1086
Bme1390I	CCNGG	3 cut(s)	30, 51, 725
Bme18I	GGWCC	1 cut(s)	294
BmgT120I	GGNCC	2 cut(s)	294, 434
BmiI	GGNNCC	2 cut(s)	295, 1194
BmrFI	CCNGG	3 cut(s)	30, 51, 725
BmsI	GCATC	1 cut(s)	274
Bpu10I	CCTNAGC	1 cut(s)	909
Bpu14I	TTCGAA	1 cut(s)	1070
BpuEI	CTTGAG	1 cut(s)	586
BpuMI	CCSGG	1 cut(s)	725
Bsa29I	ATCGAT	1 cut(s)	495
BsaBI	GATNNNNATC	2 cut(s)	165, 426
BsaJI	CCNNGG	2 cut(s)	28, 1038
Bsc4I	CCNNNNNNNGG	4 cut(s)	472, 1106, 1155, 1227
Bse1I	ACTGG	1 cut(s)	259
Bse21I	CCTNAGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	1209
Bse8I	GATNNNNATC	2 cut(s)	165, 426
BseBI	CCWGG	2 cut(s)	30, 51
BseCI	ATCGAT	1 cut(s)	495
BseDI	CCNNGG	2 cut(s)	28, 1038
BseGI	GGATG	2 cut(s)	462, 627
BseJI	GATNNNNATC	2 cut(s)	165, 426
BseLI	CCNNNNNNNGG	4 cut(s)	472, 1106, 1155, 1227
BseMI	GCAATG	1 cut(s)	1209
BseMII	CTCAG	5 cut(s)	26, 216, 497, 607, 900
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	2 cut(s)	14, 1003
BseXI	GCAGC	1 cut(s)	688
Bsh1236I	CGCG	1 cut(s)	681
BshFI	GGCC	4 cut(s)	258, 436, 1043, 1213
BshNI	GGYRCC	1 cut(s)	1192
BshVI	ATCGAT	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	725
BslFI	GGGAC	3 cut(s)	559, 707, 820
BslI	CCNNNNNNNGG	4 cut(s)	472, 1106, 1155, 1227
BsmAI	GTCTC	2 cut(s)	486, 596
BsmFI	GGGAC	3 cut(s)	559, 707, 820
BsmI	GAATGC	1 cut(s)	762
BsnI	GGCC	4 cut(s)	258, 436, 1043, 1213
Bsp119I	TTCGAA	1 cut(s)	1070
Bsp1407I	TGTACA	1 cut(s)	976
BspANI	GGCC	4 cut(s)	258, 436, 1043, 1213
BspCNI	CTCAG	5 cut(s)	25, 217, 496, 606, 901
BspDI	ATCGAT	1 cut(s)	495
BspFNI	CGCG	1 cut(s)	681
BspLI	GGNNCC	2 cut(s)	295, 1194
BspMAI	CTGCAG	1 cut(s)	1188
BspPI	GGATC	4 cut(s)	41, 265, 435, 917
BspT104I	TTCGAA	1 cut(s)	1070
BspT107I	GGYRCC	1 cut(s)	1192
BsrDI	GCAATG	1 cut(s)	1209
BsrGI	TGTACA	1 cut(s)	976
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	2 cut(s)	28, 1038
Bst2UI	CCWGG	2 cut(s)	30, 51
Bst4CI	ACNGT	4 cut(s)	139, 472, 508, 1130
Bst6I	CTCTTC	1 cut(s)	796
BstAPI	GCANNNNNTGC	2 cut(s)	129, 1192
BstAUI	TGTACA	1 cut(s)	976
BstBI	TTCGAA	1 cut(s)	1070
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	6 cut(s)	12, 225, 483, 593, 909, 1262
BstDSI	CCRYGG	1 cut(s)	1038
BstENI	CCTNNNNNAGG	1 cut(s)	1225
BstF5I	GGATG	2 cut(s)	462, 627
BstFNI	CGCG	1 cut(s)	681
BstHHI	GCGC	1 cut(s)	683
BstMAI	GTCTC	2 cut(s)	486, 596
BstMWI	GCNNNNNNNGC	5 cut(s)	129, 217, 220, 675, 1192
BstNI	CCWGG	2 cut(s)	30, 51
BstSCI	CCNGG	3 cut(s)	28, 49, 723
BstSFI	CTRYAG	1 cut(s)	1184
BstUI	CGCG	1 cut(s)	681
BstV1I	GCAGC	1 cut(s)	688
Bsu15I	ATCGAT	1 cut(s)	495
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	4 cut(s)	258, 436, 1043, 1213
BsuTUI	ATCGAT	1 cut(s)	495
BtgI	CCRYGG	1 cut(s)	1038
BtsCI	GGATG	2 cut(s)	462, 627
BtsIMutI	CAGTG	4 cut(s)	468, 1002, 1017, 1135
Cac8I	GCNNGC	1 cut(s)	386
CaiI	CAGNNNCTG	1 cut(s)	1016
CfoI	GCGC	1 cut(s)	683
Cfr13I	GGNCC	2 cut(s)	294, 434
ClaI	ATCGAT	1 cut(s)	495
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	4 cut(s)	460, 825, 977, 1085
CviAII	CATG	4 cut(s)	431, 617, 645, 1034
CviQI	GTAC	4 cut(s)	460, 825, 977, 1085
DdeI	CTNAG	6 cut(s)	12, 225, 483, 593, 909, 1262
DraIII	CACNNNGTG	1 cut(s)	472
EaeI	YGGCCR	2 cut(s)	256, 1041
Eam1104I	CTCTTC	1 cut(s)	796
EarI	CTCTTC	1 cut(s)	796
EciI	GGCGGA	3 cut(s)	376, 422, 962
Eco147I	AGGCCT	1 cut(s)	1213
Eco47I	GGWCC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	987
Eco81I	CCTNAGG	1 cut(s)	225
EcoNI	CCTNNNNNAGG	1 cut(s)	1225
EcoO109I	RGGNCCY	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	1072
EcoRII	CCWGG	2 cut(s)	28, 49
FaeI	CATG	4 cut(s)	434, 620, 648, 1037
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FaqI	GGGAC	3 cut(s)	559, 707, 820
FatI	CATG	4 cut(s)	430, 616, 644, 1033
FauI	CCCGC	1 cut(s)	393
FbaI	TGATCA	2 cut(s)	445, 709
Fnu4HI	GCNGC	7 cut(s)	121, 212, 215, 218, 221, 679, 702
FokI	GGATG	2 cut(s)	449, 614
Fsp4HI	GCNGC	7 cut(s)	121, 212, 215, 218, 221, 679, 702
FspBI	CTAG	5 cut(s)	72, 240, 705, 810, 1140
GlaI	GCGC	1 cut(s)	682
GluI	GCNGC	7 cut(s)	121, 212, 215, 218, 221, 679, 702
HaeIII	GGCC	4 cut(s)	258, 436, 1043, 1213
HapII	CCGG	1 cut(s)	725
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	683
Hin1II	CATG	4 cut(s)	434, 620, 648, 1037
Hin6I	GCGC	1 cut(s)	681
HinP1I	GCGC	1 cut(s)	681
HindIII	AAGCTT	1 cut(s)	1232
HinfI	GANTC	9 cut(s)	113, 236, 391, 497, 589, 728, 1007, 1096, 1258
HpaII	CCGG	1 cut(s)	725
HphI	GGTGA	2 cut(s)	170, 440
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	5 cut(s)	15, 270, 687, 922, 1119
Hpy188III	TCNNGA	5 cut(s)	191, 240, 419, 1023, 1055
Hpy8I	GTNNAC	1 cut(s)	68
HpyAV	CCTTC	6 cut(s)	70, 369, 785, 858, 1248, 1283
HpyCH4III	ACNGT	4 cut(s)	139, 472, 508, 1130
HpyCH4V	TGCA	4 cut(s)	338, 848, 1133, 1186
HpyF10VI	GCNNNNNNNGC	5 cut(s)	129, 217, 220, 675, 1192
HpyF3I	CTNAG	6 cut(s)	12, 225, 483, 593, 909, 1262
Hsp92II	CATG	4 cut(s)	434, 620, 648, 1037
HspAI	GCGC	1 cut(s)	681
Ksp22I	TGATCA	2 cut(s)	445, 709
LmnI	GCTCC	2 cut(s)	27, 688
Lsp1109I	GCAGC	1 cut(s)	688
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	5 cut(s)	72, 240, 705, 810, 1140
MaeIII	GTNAC	2 cut(s)	77, 961
MboII	GAAGA	6 cut(s)	161, 422, 593, 813, 980, 1158
MlsI	TGGCCA	2 cut(s)	258, 1043
MluCI	AATT	9 cut(s)	146, 175, 339, 664, 775, 850, 895, 1072, 1079
MluNI	TGGCCA	2 cut(s)	258, 1043
MlyI	GAGTC	2 cut(s)	598, 1252
MmeI	TCCRAC	1 cut(s)	799
Mox20I	TGGCCA	2 cut(s)	258, 1043
MroXI	GAANNNNTTC	3 cut(s)	414, 1165, 1235
MscI	TGGCCA	2 cut(s)	258, 1043
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	767
Msp20I	TGGCCA	2 cut(s)	258, 1043
MspI	CCGG	1 cut(s)	725
MspR9I	CCNGG	3 cut(s)	30, 51, 725
Mva1269I	GAATGC	1 cut(s)	762
MvaI	CCWGG	2 cut(s)	30, 51
MvnI	CGCG	1 cut(s)	681
MwoI	GCNNNNNNNGC	5 cut(s)	129, 217, 220, 675, 1192
NciI	CCSGG	1 cut(s)	725
NlaIII	CATG	4 cut(s)	434, 620, 648, 1037
NlaIV	GGNNCC	2 cut(s)	295, 1194
NmuCI	GTSAC	2 cut(s)	77, 961
NspV	TTCGAA	1 cut(s)	1070
PceI	AGGCCT	1 cut(s)	1213
PctI	GAATGC	1 cut(s)	762
PdmI	GAANNNNTTC	3 cut(s)	414, 1165, 1235
PfeI	GAWTC	7 cut(s)	113, 236, 391, 497, 728, 1007, 1096
PflMI	CCANNNNNTGG	2 cut(s)	472, 1155
PfoI	TCCNGGA	1 cut(s)	723
PkrI	GCNGC	7 cut(s)	122, 213, 216, 219, 222, 680, 703
PleI	GAGTC	2 cut(s)	597, 1252
PpsI	GAGTC	2 cut(s)	597, 1252
PpuMI	RGGWCCY	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	294
Psp6I	CCWGG	2 cut(s)	28, 49
PspGI	CCWGG	2 cut(s)	28, 49
PspN4I	GGNNCC	2 cut(s)	295, 1194
PspPI	GGNCC	2 cut(s)	294, 434
PspPPI	RGGWCCY	1 cut(s)	294
PstI	CTGCAG	1 cut(s)	1188
PstNI	CAGNNNCTG	1 cut(s)	1016
RsaI	GTAC	4 cut(s)	461, 826, 978, 1086
RsaNI	GTAC	4 cut(s)	460, 825, 977, 1085
RseI	CAYNNNNRTG	1 cut(s)	767
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	7 cut(s)	121, 212, 215, 218, 221, 679, 702
Sau96I	GGNCC	2 cut(s)	294, 434
ScaI	AGTACT	1 cut(s)	1086
SchI	GAGTC	2 cut(s)	598, 1252
ScrFI	CCNGG	3 cut(s)	30, 51, 725
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	1184
SfuI	TTCGAA	1 cut(s)	1070
SinI	GGWCC	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	767
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
SpeI	ACTAGT	1 cut(s)	809
Sse9I	AATT	9 cut(s)	146, 175, 339, 664, 775, 850, 895, 1072, 1079
SseBI	AGGCCT	1 cut(s)	1213
SspMI	CTAG	5 cut(s)	72, 240, 705, 810, 1140
StuI	AGGCCT	1 cut(s)	1213
StyD4I	CCNGG	3 cut(s)	28, 49, 723
TaaI	ACNGT	4 cut(s)	139, 472, 508, 1130
TaqI	TCGA	4 cut(s)	356, 495, 1070, 1244
TasI	AATT	9 cut(s)	146, 175, 339, 664, 775, 850, 895, 1072, 1079
TatI	WGTACW	2 cut(s)	976, 1084
TauI	GCSGC	6 cut(s)	123, 214, 217, 220, 223, 681
TfiI	GAWTC	7 cut(s)	113, 236, 391, 497, 728, 1007, 1096
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	4 cut(s)	475, 1002, 1017, 1135
TseFI	GTSAC	2 cut(s)	77, 961
TseI	GCWGC	1 cut(s)	701
Tsp45I	GTSAC	2 cut(s)	77, 961
TspDTI	ATGAA	2 cut(s)	126, 1220
TspGWI	ACGGA	1 cut(s)	563
TspRI	CASTG	4 cut(s)	475, 1002, 1017, 1135
Van91I	CCANNNNNTGG	2 cut(s)	472, 1155
VpaK11BI	GGWCC	1 cut(s)	294
XagI	CCTNNNNNAGG	1 cut(s)	1225
XapI	RAATTY	5 cut(s)	146, 175, 775, 850, 1072
XbaI	TCTAGA	1 cut(s)	239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1051
XmnI	GAANNNNTTC	3 cut(s)	414, 1165, 1235
XspI	CTAG	5 cut(s)	72, 240, 705, 810, 1140
ZrmI	AGTACT	1 cut(s)	1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.