Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8477273.1

Orthogroup ID

OG0012774

Physical Location & Seq

Genomic Coordinates Forward (+)

70 .. 1053

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8477273.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atgatcggggtttctctttttctctgtattgtttttgcaattttgagatactattcgaggcggagaaatcccagaaggagaagcccgccgattctgtttgctacggcggaagattttcttgatgaggatcatgggcctgtgcttgatcaccccatttggtacatccacactgtgggtctgcctcaggctttgatcgattccattacagtttgtaagtatagaaaagatgagggtttgattgaggggacggattgttctgtttgcttgagtgagtttgaggaagatgagagtctcaggcttttgccaaagtgtagtcatgcttttcacatcccttgtattgatacatggttgagatcacataagaattgccctctttgccgcgctccgattgtttgtggtgctgcgagtaatcaagtgagtgtcccggattcgattgcgagtggttcgggttctggggagagcattcgggtggagaatttggagagtgttgaagggattggaagagggactagtgaggttggaggtacagatgatgagaatgtcggtgcaaattctgttgatggaaggagtgttgaaagttcaaaggttttgcctaattctattttggctgagggaagttctgatccaagagcattgagcgatttggcggataatagacgagtgactgaagatgatgtacagccaatgaggaggtcagtgtcggtggattcggtgtctgcttcaagaatatatcatgctgtggccaatgctattccggaacaaggaagttcgaattcccaattagtacttgtaaagaatccaaagttggggattgttcggaagcaggacagtgcaagttctaccctatccaagcattggagaagttcttcaaatggtctttctctgcagatggcgccaatggcaatgaaaaggcctttcccctctggcaggaagcttttctcatcgaaacacagaaggactcttagctcagtccttcccttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

327

Amino Acids

35.67

Weight (kDa)

7.1

Isoelectric Point (pI)

59.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10380
fragaria_vesca	FvH4_1g20164
malus_domestica	MD01G1036900.v1.1 MD15G1317400.v1.1
prunus_persica	Prupe.6G194300_v2.0.a1
pyrus_communis	pycom01g06390 pycom15g27980
rosa_chinensis	RchiOBHm_Chr2g0112241
rosa_laevigata	RLG00000017962
rosa_multiflora	Rmu_co8477273.1_g000001 Rmu_sc0001386.1_g000026
rosa_roxburghii	Rroxscaffold_2G00131620
rosa_rugosa	Rorug02G0179300
rosa_samantha	Rh2AG231700 Rh2BG245200 Rh2CG236100 Rh2DG239600
rosa_wichuraiana	Rw2G017980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	892
AccB7I	CCANNNNNTGG	2 cut(s)	172, 855
AccII	CGCG	1 cut(s)	381
AccIII	TCCGGA	1 cut(s)	754
AciI	CCGC	5 cut(s)	61, 86, 107, 379, 647
AclWI	GGATC	2 cut(s)	135, 617
AcoI	YGGCCR	1 cut(s)	741
AcsI	RAATTY	3 cut(s)	475, 550, 772
AcuI	CTGAAG	1 cut(s)	687
AcyI	GRCGYC	1 cut(s)	893
AdeI	CACNNNGTG	1 cut(s)	172
AfaI	GTAC	4 cut(s)	161, 526, 678, 786
AfiI	CCNNNNNNNGG	5 cut(s)	172, 761, 806, 855, 927
AgsI	TTSAA	5 cut(s)	491, 575, 582, 723, 870
AhlI	ACTAGT	1 cut(s)	509
AjuI	GAANNNNNNNTTGG	2 cut(s)	788, 820
AloI	GAACNNNNNNTCC	2 cut(s)	238, 270
AluBI	AGCT	2 cut(s)	934, 966
AluI	AGCT	2 cut(s)	934, 966
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	2 cut(s)	135, 617
Aor13HI	TCCGGA	1 cut(s)	754
AoxI	GGCC	3 cut(s)	134, 741, 911
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	3 cut(s)	475, 550, 772
Asp700I	GAANNNNTTC	3 cut(s)	114, 865, 935
AspLEI	GCGC	2 cut(s)	383, 895
AspS9I	GGNCC	1 cut(s)	134
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	140
AsuII	TTCGAA	1 cut(s)	770
AxyI	CCTNAGG	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	743
BanI	GGYRCC	1 cut(s)	892
BarI	GAAGNNNNNNTAC	2 cut(s)	660, 692
BbvCI	CCTCAGC	1 cut(s)	609
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	2 cut(s)	554, 883
BceAI	ACGGC	1 cut(s)	120
BclI	TGATCA	1 cut(s)	145
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	1 cut(s)	296
BcuI	ACTAGT	1 cut(s)	509
BfaI	CTAG	1 cut(s)	510
BfmI	CTRYAG	1 cut(s)	884
BfoI	RGCGCY	1 cut(s)	896
BisI	GCNGC	2 cut(s)	379, 402
BlsI	GCNGC	2 cut(s)	380, 403
BmcAI	AGTACT	1 cut(s)	786
Bme1390I	CCNGG	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	894
BmrFI	CCNGG	1 cut(s)	425
Bpu10I	CCTNAGC	1 cut(s)	609
Bpu14I	TTCGAA	1 cut(s)	770
BpuEI	CTTGAG	1 cut(s)	286
BpuMI	CCSGG	1 cut(s)	425
Bsa29I	ATCGAT	1 cut(s)	195
BsaBI	GATNNNNATC	1 cut(s)	126
BsaHI	GRCGYC	1 cut(s)	893
BsaWI	WCCGGW	1 cut(s)	754
Bsc4I	CCNNNNNNNGG	5 cut(s)	172, 761, 806, 855, 927
Bse21I	CCTNAGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	909
Bse8I	GATNNNNATC	1 cut(s)	126
BseAI	TCCGGA	1 cut(s)	754
BseCI	ATCGAT	1 cut(s)	195
BseGI	GGATG	2 cut(s)	162, 327
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	5 cut(s)	172, 761, 806, 855, 927
BseMI	GCAATG	1 cut(s)	909
BseMII	CTCAG	4 cut(s)	197, 307, 600, 981
BseRI	GAGGAG	1 cut(s)	703
BseXI	GCAGC	1 cut(s)	388
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	3 cut(s)	136, 743, 913
BshNI	GGYRCC	1 cut(s)	892
BshVI	ATCGAT	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	425, 755
BslFI	GGGAC	3 cut(s)	259, 407, 520
BslI	CCNNNNNNNGG	5 cut(s)	172, 761, 806, 855, 927
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	3 cut(s)	259, 407, 520
BsmI	GAATGC	1 cut(s)	462
BsnI	GGCC	3 cut(s)	136, 743, 913
Bsp119I	TTCGAA	1 cut(s)	770
Bsp13I	TCCGGA	1 cut(s)	754
Bsp1407I	TGTACA	1 cut(s)	676
Bsp143I	GATC	6 cut(s)	3, 127, 145, 192, 353, 622
BspACI	CCGC	5 cut(s)	61, 86, 107, 379, 647
BspANI	GGCC	3 cut(s)	136, 743, 913
BspCNI	CTCAG	4 cut(s)	196, 306, 601, 980
BspDI	ATCGAT	1 cut(s)	195
BspEI	TCCGGA	1 cut(s)	754
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	894
BspMAI	CTGCAG	1 cut(s)	888
BspPI	GGATC	2 cut(s)	135, 617
BspT104I	TTCGAA	1 cut(s)	770
BspT107I	GGYRCC	1 cut(s)	892
BsrDI	GCAATG	1 cut(s)	909
BsrGI	TGTACA	1 cut(s)	676
BssMI	GATC	6 cut(s)	3, 127, 145, 192, 353, 622
BssNI	GRCGYC	1 cut(s)	893
Bst4CI	ACNGT	3 cut(s)	172, 208, 830
Bst6I	CTCTTC	1 cut(s)	496
BstACI	GRCGYC	1 cut(s)	893
BstAUI	TGTACA	1 cut(s)	676
BstBI	TTCGAA	1 cut(s)	770
BstC8I	GCNNGC	1 cut(s)	86
BstDEI	CTNAG	5 cut(s)	183, 293, 609, 962, 967
BstENI	CCTNNNNNAGG	1 cut(s)	925
BstF5I	GGATG	2 cut(s)	162, 327
BstFNI	CGCG	1 cut(s)	381
BstH2I	RGCGCY	1 cut(s)	896
BstHHI	GCGC	2 cut(s)	383, 895
BstKTI	GATC	6 cut(s)	6, 130, 148, 195, 356, 625
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	6 cut(s)	3, 127, 145, 192, 353, 622
BstMWI	GCNNNNNNNGC	3 cut(s)	375, 892, 899
BstSCI	CCNGG	1 cut(s)	423
BstSFI	CTRYAG	1 cut(s)	884
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	388
Bsu15I	ATCGAT	1 cut(s)	195
Bsu36I	CCTNAGG	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	136, 743, 913
BsuTUI	ATCGAT	1 cut(s)	195
BtsCI	GGATG	2 cut(s)	162, 327
BtsIMutI	CAGTG	3 cut(s)	168, 702, 835
Cac8I	GCNNGC	1 cut(s)	86
CfoI	GCGC	2 cut(s)	383, 895
Cfr13I	GGNCC	1 cut(s)	134
ClaI	ATCGAT	1 cut(s)	195
Csp6I	GTAC	4 cut(s)	160, 525, 677, 785
CviAII	CATG	4 cut(s)	131, 317, 345, 734
CviQI	GTAC	4 cut(s)	160, 525, 677, 785
DdeI	CTNAG	5 cut(s)	183, 293, 609, 962, 967
DinI	GGCGCC	1 cut(s)	894
DpnI	GATC	6 cut(s)	5, 129, 147, 194, 355, 624
DpnII	GATC	6 cut(s)	3, 127, 145, 192, 353, 622
DraIII	CACNNNGTG	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	741
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
EciI	GGCGGA	3 cut(s)	76, 122, 662
Eco147I	AGGCCT	1 cut(s)	913
Eco57I	CTGAAG	1 cut(s)	687
Eco81I	CCTNAGG	1 cut(s)	183
EcoNI	CCTNNNNNAGG	1 cut(s)	925
EcoRI	GAATTC	1 cut(s)	772
EgeI	GGCGCC	1 cut(s)	894
EheI	GGCGCC	1 cut(s)	894
FaeI	CATG	4 cut(s)	134, 320, 348, 737
FaiI	YATR	8 cut(s)	132, 219, 318, 346, 360, 730, 735, 982
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	3 cut(s)	259, 407, 520
FatI	CATG	4 cut(s)	130, 316, 344, 733
FauI	CCCGC	1 cut(s)	93
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	2 cut(s)	379, 402
FokI	GGATG	2 cut(s)	149, 314
Fsp4HI	GCNGC	2 cut(s)	379, 402
FspBI	CTAG	1 cut(s)	510
GlaI	GCGC	2 cut(s)	382, 894
GluI	GCNGC	2 cut(s)	379, 402
HaeII	RGCGCY	1 cut(s)	896
HaeIII	GGCC	3 cut(s)	136, 743, 913
HapII	CCGG	2 cut(s)	425, 755
HhaI	GCGC	2 cut(s)	383, 895
Hin1I	GRCGYC	1 cut(s)	893
Hin1II	CATG	4 cut(s)	134, 320, 348, 737
Hin6I	GCGC	2 cut(s)	381, 893
HinP1I	GCGC	2 cut(s)	381, 893
HindIII	AAGCTT	1 cut(s)	932
HinfI	GANTC	7 cut(s)	91, 197, 289, 428, 707, 796, 958
HpaII	CCGG	2 cut(s)	425, 755
HphI	GGTGA	1 cut(s)	140
Hpy188I	TCNGA	3 cut(s)	387, 622, 819
Hpy188III	TCNNGA	3 cut(s)	119, 723, 755
HpyAV	CCTTC	5 cut(s)	69, 485, 558, 948, 983
HpyCH4III	ACNGT	3 cut(s)	172, 208, 830
HpyCH4V	TGCA	4 cut(s)	38, 548, 833, 886
HpyF10VI	GCNNNNNNNGC	3 cut(s)	375, 892, 899
HpyF3I	CTNAG	5 cut(s)	183, 293, 609, 962, 967
Hsp92I	GRCGYC	1 cut(s)	893
Hsp92II	CATG	4 cut(s)	134, 320, 348, 737
HspAI	GCGC	2 cut(s)	381, 893
KasI	GGCGCC	1 cut(s)	892
Kpn2I	TCCGGA	1 cut(s)	754
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	6 cut(s)	3, 127, 145, 192, 353, 622
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	1 cut(s)	388
MaeI	CTAG	1 cut(s)	510
MaeIII	GTNAC	1 cut(s)	661
MalI	GATC	6 cut(s)	5, 129, 147, 194, 355, 624
MboI	GATC	6 cut(s)	3, 127, 145, 192, 353, 622
MboII	GAAGA	5 cut(s)	122, 293, 513, 680, 858
MlsI	TGGCCA	1 cut(s)	743
MluCI	AATT	7 cut(s)	39, 364, 475, 550, 595, 772, 779
MluNI	TGGCCA	1 cut(s)	743
Mly113I	GGCGCC	1 cut(s)	893
MlyI	GAGTC	2 cut(s)	298, 952
MmeI	TCCRAC	1 cut(s)	499
Mox20I	TGGCCA	1 cut(s)	743
MroI	TCCGGA	1 cut(s)	754
MroXI	GAANNNNTTC	3 cut(s)	114, 865, 935
MscI	TGGCCA	1 cut(s)	743
MslI	CAYNNNNRTG	1 cut(s)	467
Msp20I	TGGCCA	1 cut(s)	743
MspI	CCGG	2 cut(s)	425, 755
MspR9I	CCNGG	1 cut(s)	425
Mva1269I	GAATGC	1 cut(s)	462
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	375, 892, 899
NarI	GGCGCC	1 cut(s)	893
NciI	CCSGG	1 cut(s)	425
NdeII	GATC	6 cut(s)	3, 127, 145, 192, 353, 622
NlaIII	CATG	4 cut(s)	134, 320, 348, 737
NlaIV	GGNNCC	1 cut(s)	894
NmuCI	GTSAC	1 cut(s)	661
NspV	TTCGAA	1 cut(s)	770
PceI	AGGCCT	1 cut(s)	913
PctI	GAATGC	1 cut(s)	462
PdmI	GAANNNNTTC	3 cut(s)	114, 865, 935
PfeI	GAWTC	5 cut(s)	91, 197, 428, 707, 796
PflMI	CCANNNNNTGG	2 cut(s)	172, 855
PfoI	TCCNGGA	1 cut(s)	423
PkrI	GCNGC	2 cut(s)	380, 403
PleI	GAGTC	2 cut(s)	297, 952
PluTI	GGCGCC	1 cut(s)	896
PpsI	GAGTC	2 cut(s)	297, 952
PspN4I	GGNNCC	1 cut(s)	894
PspPI	GGNCC	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	888
RsaI	GTAC	4 cut(s)	161, 526, 678, 786
RsaNI	GTAC	4 cut(s)	160, 525, 677, 785
RseI	CAYNNNNRTG	1 cut(s)	467
SatI	GCNGC	2 cut(s)	379, 402
Sau3AI	GATC	6 cut(s)	3, 127, 145, 192, 353, 622
Sau96I	GGNCC	1 cut(s)	134
ScaI	AGTACT	1 cut(s)	786
SchI	GAGTC	2 cut(s)	298, 952
ScrFI	CCNGG	1 cut(s)	425
SetI	ASST	6 cut(s)	519, 526, 588, 695, 936, 968
SfcI	CTRYAG	1 cut(s)	884
SfoI	GGCGCC	1 cut(s)	894
SfuI	TTCGAA	1 cut(s)	770
SmiMI	CAYNNNNRTG	1 cut(s)	467
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
SpeI	ACTAGT	1 cut(s)	509
Sse9I	AATT	7 cut(s)	39, 364, 475, 550, 595, 772, 779
SseBI	AGGCCT	1 cut(s)	913
SsiI	CCGC	5 cut(s)	61, 86, 107, 379, 647
SspDI	GGCGCC	1 cut(s)	892
SspMI	CTAG	1 cut(s)	510
StuI	AGGCCT	1 cut(s)	913
StyD4I	CCNGG	1 cut(s)	423
TaaI	ACNGT	3 cut(s)	172, 208, 830
TaqI	TCGA	5 cut(s)	56, 195, 431, 770, 944
TasI	AATT	7 cut(s)	39, 364, 475, 550, 595, 772, 779
TatI	WGTACW	2 cut(s)	676, 784
TauI	GCSGC	1 cut(s)	381
TfiI	GAWTC	5 cut(s)	91, 197, 428, 707, 796
TscAI	CASTG	3 cut(s)	175, 702, 835
TseFI	GTSAC	1 cut(s)	661
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	661
TspDTI	ATGAA	1 cut(s)	920
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	3 cut(s)	175, 702, 835
Van91I	CCANNNNNTGG	2 cut(s)	172, 855
XagI	CCTNNNNNAGG	1 cut(s)	925
XapI	RAATTY	3 cut(s)	475, 550, 772
XmnI	GAANNNNTTC	3 cut(s)	114, 865, 935
XspI	CTAG	1 cut(s)	510
ZrmI	AGTACT	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.