Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011070

Physical Location & Seq

Genomic Coordinates Reverse (-)

3516092 .. 3517035

Gene Structure 944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTATAACGAATGCAGCTCTCCCTCCACCGCAAGATCAACAACGAGAGTCACAAATCACAGAATGAGATCTCCGATCTGTTGTATAGGAGCCAACGCGGTGGTTGAGCCAGAAGCCATGATGATCGGAGGAGAACAAAGAACACCAAGATCTCCTTACGAATGGCTCAAATCTACGGCGCAGGAGCTAGAGTTAAGAGATCGGTGCCGGCGTGTGAAGTCACGTATCAAGGTTACGTGTCGTAACAACAATTGTGCTTATAATAATTGTGTTCATCATCATCATCATAGCCAGAGTTATCCTGGAGATTTCAGTTACGATCCGTTGAGTTACGCGCTCAATTTCGAGGATAATGTGAGAGCTGATGACGATGGTTCTTTTCCTAATTTCACGGCGAGGTTGCCTCAGTCGCCGGTGACCAAGACGAGATCGGCGACGGTTGATTTGATCTCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

17.29

Weight (kDa)

8.52

Isoelectric Point (pI)

57.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11070 AT5G35090
prunus_persica	Prupe.7G255000_v2.0.a1
pyrus_communis	pycom02g01220 pycom15g14380
rosa_chinensis	RchiOBHm_Chr2g0086701
rosa_laevigata	RLG00000015783 RLG00000031868
rosa_multiflora	Rmu_sc0004626.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064680 Rroxscaffold_2G00154280
rosa_rugosa	Rorug01G0469000
rosa_samantha	Rh2AG021000 Rh2BG020900 Rh2CG021800 Rh2DG021600 Rh5BG087200 Rh5CG101100 Rh5DG087800
rosa_wichuraiana	Rw2G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	204
AccII	CGCG	2 cut(s)	98, 335
AciI	CCGC	2 cut(s)	30, 98
AclWI	GGATC	1 cut(s)	314
AflIII	ACRYGT	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	3 cut(s)	18, 187, 362
AluI	AGCT	3 cut(s)	18, 187, 362
AlwI	GGATC	1 cut(s)	314
ApeKI	GCWGC	1 cut(s)	15
ArsI	GACNNNNNNTTYG	2 cut(s)	427, 459
AspLEI	GCGC	2 cut(s)	181, 337
AsuHPI	GGTGA	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	365
BceAI	ACGGC	2 cut(s)	192, 408
BciT130I	CCWGG	1 cut(s)	303
BfaI	CTAG	1 cut(s)	188
BglII	AGATCT	2 cut(s)	68, 149
BisI	GCNGC	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	17
Bme1390I	CCNGG	1 cut(s)	303
BmiI	GGNNCC	2 cut(s)	91, 206
BmrFI	CCNGG	1 cut(s)	303
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
BpmI	CTGGAG	1 cut(s)	324
BsaAI	YACGTR	2 cut(s)	224, 237
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bse118I	RCCGGY	2 cut(s)	207, 412
BseBI	CCWGG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	419
BseRI	GAGGAG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	27
Bsh1236I	CGCG	2 cut(s)	98, 335
BshNI	GGYRCC	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	208, 413
BsmI	GAATGC	1 cut(s)	17
Bsp143I	GATC	9 cut(s)	35, 68, 75, 123, 149, 199, 319, 428, 447
BspACI	CCGC	2 cut(s)	30, 98
BspCNI	CTCAG	1 cut(s)	418
BspFNI	CGCG	2 cut(s)	98, 335
BspLI	GGNNCC	2 cut(s)	91, 206
BspPI	GGATC	1 cut(s)	314
BspT107I	GGYRCC	1 cut(s)	204
BsrFI	RCCGGY	2 cut(s)	207, 412
BssAI	RCCGGY	2 cut(s)	207, 412
BssMI	GATC	9 cut(s)	35, 68, 75, 123, 149, 199, 319, 428, 447
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	439
BstBAI	YACGTR	2 cut(s)	224, 237
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	405
BstEII	GGTNACC	1 cut(s)	415
BstFNI	CGCG	2 cut(s)	98, 335
BstHHI	GCGC	2 cut(s)	181, 337
BstKTI	GATC	9 cut(s)	38, 71, 78, 126, 152, 202, 322, 431, 450
BstMBI	GATC	9 cut(s)	35, 68, 75, 123, 149, 199, 319, 428, 447
BstMWI	GCNNNNNNNGC	1 cut(s)	409
BstNI	CCWGG	1 cut(s)	303
BstPI	GGTNACC	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	301
BstUI	CGCG	2 cut(s)	98, 335
BstV1I	GCAGC	1 cut(s)	27
BstX2I	RGATCY	2 cut(s)	68, 149
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	2 cut(s)	68, 149
Cac8I	GCNNGC	1 cut(s)	209
CfoI	GCGC	2 cut(s)	181, 337
Cfr10I	RCCGGY	2 cut(s)	207, 412
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	8 cut(s)	18, 92, 109, 116, 166, 187, 291, 362
CviKI_1	RGCY	8 cut(s)	18, 92, 109, 116, 166, 187, 291, 362
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	9 cut(s)	37, 70, 77, 125, 151, 201, 321, 430, 449
DpnII	GATC	9 cut(s)	35, 68, 75, 123, 149, 199, 319, 428, 447
Eco91I	GGTNACC	1 cut(s)	415
EcoO65I	GGTNACC	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	301
FaeI	CATG	1 cut(s)	121
FaiI	YATR	5 cut(s)	6, 86, 119, 261, 288
FalI	AAGNNNNNCTT	2 cut(s)	139, 171
FatI	CATG	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	16
Fsp4HI	GCNGC	1 cut(s)	16
FspBI	CTAG	1 cut(s)	188
GlaI	GCGC	2 cut(s)	180, 336
GluI	GCNGC	1 cut(s)	16
GsuI	CTGGAG	1 cut(s)	324
HapII	CCGG	2 cut(s)	208, 413
HhaI	GCGC	2 cut(s)	181, 337
Hin1II	CATG	1 cut(s)	121
Hin6I	GCGC	2 cut(s)	179, 335
HinP1I	GCGC	2 cut(s)	179, 335
HinfI	GANTC	1 cut(s)	48
HpaII	CCGG	2 cut(s)	208, 413
HphI	GGTGA	1 cut(s)	427
Hpy188I	TCNGA	3 cut(s)	75, 128, 458
Hpy99I	CGWCG	1 cut(s)	439
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	2 cut(s)	223, 236
HpyCH4V	TGCA	1 cut(s)	15
HpyF10VI	GCNNNNNNNGC	1 cut(s)	409
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	2 cut(s)	223, 236
Hsp92II	CATG	1 cut(s)	121
HspAI	GCGC	2 cut(s)	179, 335
KroI	GCCGGC	1 cut(s)	207
KroNI	GCCGGC	1 cut(s)	209
Kzo9I	GATC	9 cut(s)	35, 68, 75, 123, 149, 199, 319, 428, 447
LmnI	GCTCC	2 cut(s)	89, 184
LpnPI	CCDG	7 cut(s)	123, 167, 221, 288, 305, 315, 426
Lsp1109I	GCAGC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	188
MaeII	ACGT	2 cut(s)	223, 236
MaeIII	GTNAC	7 cut(s)	49, 219, 232, 242, 314, 329, 415
MalI	GATC	9 cut(s)	37, 70, 77, 125, 151, 201, 321, 430, 449
MboI	GATC	9 cut(s)	35, 68, 75, 123, 149, 199, 319, 428, 447
MfeI	CAATTG	1 cut(s)	250
MflI	RGATCY	2 cut(s)	68, 149
MluCI	AATT	4 cut(s)	250, 265, 340, 385
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	5 cut(s)	34, 122, 340, 390, 414
MroNI	GCCGGC	1 cut(s)	207
MseI	TTAA	1 cut(s)	194
MspI	CCGG	2 cut(s)	208, 413
MspR9I	CCNGG	1 cut(s)	303
MunI	CAATTG	1 cut(s)	250
Mva1269I	GAATGC	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	303
MvnI	CGCG	2 cut(s)	98, 335
MwoI	GCNNNNNNNGC	1 cut(s)	409
NaeI	GCCGGC	1 cut(s)	209
NdeII	GATC	9 cut(s)	35, 68, 75, 123, 149, 199, 319, 428, 447
NgoMIV	GCCGGC	1 cut(s)	207
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	2 cut(s)	91, 206
NmuCI	GTSAC	3 cut(s)	49, 219, 415
PcsI	WCGNNNNNNNCGW	2 cut(s)	208, 431
PctI	GAATGC	1 cut(s)	17
PdiI	GCCGGC	1 cut(s)	209
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	17
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
Ppu21I	YACGTR	2 cut(s)	224, 237
PsiI	TTATAA	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	301
PspEI	GGTNACC	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	2 cut(s)	91, 206
PsuI	RGATCY	2 cut(s)	68, 149
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	9 cut(s)	35, 68, 75, 123, 149, 199, 319, 428, 447
SchI	GAGTC	1 cut(s)	57
ScrFI	CCNGG	1 cut(s)	303
SetI	ASST	7 cut(s)	20, 189, 226, 234, 239, 364, 401
SgrAI	CRCCGGYG	1 cut(s)	412
Sse9I	AATT	4 cut(s)	250, 265, 340, 385
SsiI	CCGC	2 cut(s)	30, 98
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	2 cut(s)	226, 239
TaqI	TCGA	1 cut(s)	345
TasI	AATT	4 cut(s)	250, 265, 340, 385
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TseFI	GTSAC	3 cut(s)	49, 219, 415
TseI	GCWGC	1 cut(s)	15
Tsp45I	GTSAC	3 cut(s)	49, 219, 415
TspDTI	ATGAA	1 cut(s)	263
TspGWI	ACGGA	1 cut(s)	312
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.