Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0011070

Physical Location & Seq

Genomic Coordinates Reverse (-)

698674 .. 699917

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAACAAAAATTCAAATGGATTGCATATACTCAAATCTTCCTTTTTTTGGTCCAGTAGTCCGGAAACCTACGTGTCCTCATCCGTCATTGCACCTTCCCCACGGGGCCTCCTCCTCCTAAATAAAAACACAAATACCACCACGACGGCCCCTCACCTCTCCACACAAATCAAAATAATGGAGAACCACCACGAACCCTGCTCCCCAAACTCCCTCAAACAAAAGCTCCGCTCCTCCCTCTGCATCATCCCATGCTTCCCTACTCCTAAAGCTCACCACCACCGCGCCCTCACGGCGCCTCCCACTCCGAATGAGGCTGATAATGTCAGCCTCGTGCAAACCTCCTCATTCTCCCCTAATCCTCGGTCCTCGCGGTCTAGGCATCATCACCACCCCCAACACCATTACAACCACCACCACCACAACAATCATTACGAGTTTGCAGAATTGAAAGACAAGTGCAGAAATTGGATTGGGCGCATGCATGGACGTGGCAATGGCCATGGCGGCGAGGGGCGGAGGCATCATTCAGCCGATTTCAAATATGACGCACTCAGCTACGCCCTCAACTTTGATCACGAGGAGTCCAACCTCGAGGATGACCCGCTCTTGGGATTCTCCTCCCGATTGCCGCATTCGCCGCCTCGAACATCGCAGGACTCTGTGGCTTCTCCGCCTGCGTCCAAGGAGATAACTGCCTACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

26.39

Weight (kDa)

9.08

Isoelectric Point (pI)

61.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11070 AT5G35090
prunus_persica	Prupe.7G255000_v2.0.a1
pyrus_communis	pycom02g01220 pycom15g14380
rosa_chinensis	RchiOBHm_Chr2g0086701
rosa_laevigata	RLG00000015783 RLG00000031868
rosa_multiflora	Rmu_sc0004626.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064680 Rroxscaffold_2G00154280
rosa_rugosa	Rorug01G0469000
rosa_samantha	Rh2AG021000 Rh2BG020900 Rh2CG021800 Rh2DG021600 Rh5BG087200 Rh5CG101100 Rh5DG087800
rosa_wichuraiana	Rw2G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	593
AccB1I	GGYRCC	1 cut(s)	295
AccBSI	CCGCTC	2 cut(s)	231, 607
AccII	CGCG	2 cut(s)	285, 373
AccIII	TCCGGA	1 cut(s)	61
AciI	CCGC	9 cut(s)	229, 283, 373, 507, 517, 605, 632, 641, 674
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	1 cut(s)	10
AcyI	GRCGYC	1 cut(s)	296
AfiI	CCNNNNNNNGG	3 cut(s)	48, 610, 611
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	3 cut(s)	15, 451, 541
AjiI	CACGTC	1 cut(s)	491
AluBI	AGCT	4 cut(s)	226, 272, 558, 705
AluI	AGCT	4 cut(s)	226, 272, 558, 705
Ama87I	CYCGRG	1 cut(s)	593
Aor13HI	TCCGGA	1 cut(s)	61
AoxI	GGCC	3 cut(s)	106, 147, 499
ApoI	RAATTY	1 cut(s)	10
AspLEI	GCGC	3 cut(s)	287, 298, 480
AspS9I	GGNCC	4 cut(s)	51, 106, 148, 366
AsuHPI	GGTGA	3 cut(s)	146, 266, 380
AvaI	CYCGRG	1 cut(s)	593
AvaII	GGWCC	2 cut(s)	51, 366
BalI	TGGCCA	1 cut(s)	501
BanI	GGYRCC	1 cut(s)	295
BauI	CACGAG	2 cut(s)	332, 578
BceAI	ACGGC	2 cut(s)	162, 309
BclI	TGATCA	1 cut(s)	574
BfaI	CTAG	2 cut(s)	378, 706
BfmI	CTRYAG	1 cut(s)	700
BfoI	RGCGCY	1 cut(s)	299
BglI	GCCNNNNNGGC	2 cut(s)	293, 507
BisI	GCNGC	3 cut(s)	508, 632, 641
BlsI	GCNGC	3 cut(s)	509, 633, 642
Bme18I	GGWCC	2 cut(s)	51, 366
BmeT110I	CYCGRG	1 cut(s)	593
BmgBI	CACGTC	1 cut(s)	491
BmgT120I	GGNCC	4 cut(s)	51, 106, 148, 366
BmiI	GGNNCC	3 cut(s)	107, 150, 297
BmsI	GCATC	3 cut(s)	252, 391, 532
BsaAI	YACGTR	1 cut(s)	73
BsaHI	GRCGYC	1 cut(s)	296
BsaJI	CCNNGG	4 cut(s)	101, 362, 502, 684
BsaWI	WCCGGW	1 cut(s)	61
BsaXI	ACNNNNNCTCC	6 cut(s)	93, 123, 210, 240, 283, 313
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 610, 611
Bse1I	ACTGG	1 cut(s)	54
Bse3DI	GCAATG	2 cut(s)	87, 502
BseAI	TCCGGA	1 cut(s)	61
BseDI	CCNNGG	4 cut(s)	101, 362, 502, 684
BseGI	GGATG	3 cut(s)	80, 246, 604
BseLI	CCNNNNNNNGG	3 cut(s)	48, 610, 611
BseMI	GCAATG	2 cut(s)	87, 502
BseMII	CTCAG	1 cut(s)	568
BseNI	ACTGG	1 cut(s)	54
BseRI	GAGGAG	6 cut(s)	101, 104, 223, 334, 596, 610
BsgI	GTGCAG	1 cut(s)	481
Bsh1236I	CGCG	2 cut(s)	285, 373
BshFI	GGCC	3 cut(s)	108, 149, 501
BshNI	GGYRCC	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	593
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	3 cut(s)	48, 610, 611
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	3 cut(s)	108, 149, 501
BsoBI	CYCGRG	1 cut(s)	593
Bsp13I	TCCGGA	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	574
Bsp19I	CCATGG	1 cut(s)	502
BspACI	CCGC	9 cut(s)	229, 283, 373, 507, 517, 605, 632, 641, 674
BspANI	GGCC	3 cut(s)	108, 149, 501
BspCNI	CTCAG	1 cut(s)	567
BspEI	TCCGGA	1 cut(s)	61
BspFNI	CGCG	2 cut(s)	285, 373
BspLI	GGNNCC	3 cut(s)	107, 150, 297
BspT107I	GGYRCC	1 cut(s)	295
BsrBI	CCGCTC	2 cut(s)	231, 607
BsrDI	GCAATG	2 cut(s)	87, 502
BsrI	ACTGG	1 cut(s)	54
BssECI	CCNNGG	4 cut(s)	101, 362, 502, 684
BssMI	GATC	1 cut(s)	574
BssNI	GRCGYC	1 cut(s)	296
BssSI	CACGAG	2 cut(s)	332, 578
BssT1I	CCWWGG	2 cut(s)	502, 684
Bst2BI	CACGAG	2 cut(s)	332, 578
BstACI	GRCGYC	1 cut(s)	296
BstBAI	YACGTR	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	482, 678
BstDEI	CTNAG	1 cut(s)	554
BstDSI	CCRYGG	2 cut(s)	101, 502
BstF5I	GGATG	3 cut(s)	80, 246, 604
BstFNI	CGCG	2 cut(s)	285, 373
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	3 cut(s)	287, 298, 480
BstKTI	GATC	1 cut(s)	577
BstMBI	GATC	1 cut(s)	574
BstMWI	GCNNNNNNNGC	5 cut(s)	293, 379, 507, 637, 640
BstNSI	RCATGY	1 cut(s)	484
BstSFI	CTRYAG	1 cut(s)	700
BstUI	CGCG	2 cut(s)	285, 373
BsuRI	GGCC	3 cut(s)	108, 149, 501
BtgI	CCRYGG	2 cut(s)	101, 502
BtgZI	GCGATG	1 cut(s)	636
BtrI	CACGTC	1 cut(s)	491
BtsCI	GGATG	3 cut(s)	80, 246, 604
Cac8I	GCNNGC	2 cut(s)	482, 678
CfoI	GCGC	3 cut(s)	287, 298, 480
Cfr13I	GGNCC	4 cut(s)	51, 106, 148, 366
CseI	GACGC	2 cut(s)	557, 669
CviAII	CATG	4 cut(s)	252, 481, 485, 503
DdeI	CTNAG	1 cut(s)	554
DinI	GGCGCC	1 cut(s)	297
DpnI	GATC	1 cut(s)	576
DpnII	GATC	1 cut(s)	574
EaeI	YGGCCR	1 cut(s)	499
EciI	GGCGGA	2 cut(s)	532, 663
Eco130I	CCWWGG	2 cut(s)	502, 684
Eco47I	GGWCC	2 cut(s)	51, 366
Eco88I	CYCGRG	1 cut(s)	593
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	502, 684
EcoT22I	ATGCAT	1 cut(s)	486
EgeI	GGCGCC	1 cut(s)	297
EheI	GGCGCC	1 cut(s)	297
ErhI	CCWWGG	2 cut(s)	502, 684
FaeI	CATG	4 cut(s)	255, 484, 488, 506
FaiI	YATR	7 cut(s)	27, 29, 253, 482, 486, 504, 546
FatI	CATG	4 cut(s)	251, 480, 484, 502
FauI	CCCGC	1 cut(s)	612
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	3 cut(s)	508, 632, 641
FokI	GGATG	3 cut(s)	67, 233, 611
Fsp4HI	GCNGC	3 cut(s)	508, 632, 641
FspBI	CTAG	2 cut(s)	378, 706
GlaI	GCGC	3 cut(s)	286, 297, 479
GluI	GCNGC	3 cut(s)	508, 632, 641
HaeII	RGCGCY	1 cut(s)	299
HaeIII	GGCC	3 cut(s)	108, 149, 501
HapII	CCGG	1 cut(s)	62
HgaI	GACGC	2 cut(s)	557, 669
HhaI	GCGC	3 cut(s)	287, 298, 480
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	4 cut(s)	255, 484, 488, 506
Hin6I	GCGC	3 cut(s)	285, 296, 478
HinP1I	GCGC	3 cut(s)	285, 296, 478
HinfI	GANTC	3 cut(s)	584, 615, 659
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	3 cut(s)	146, 266, 380
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	3 cut(s)	62, 578, 624
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	1 cut(s)	105
HpyCH4IV	ACGT	2 cut(s)	72, 490
HpyCH4V	TGCA	7 cut(s)	25, 92, 243, 337, 443, 462, 484
HpyF10VI	GCNNNNNNNGC	5 cut(s)	293, 379, 507, 637, 640
HpyF3I	CTNAG	1 cut(s)	554
HpySE526I	ACGT	2 cut(s)	72, 490
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	4 cut(s)	255, 484, 488, 506
HspAI	GCGC	3 cut(s)	285, 296, 478
KasI	GGCGCC	1 cut(s)	295
Kpn2I	TCCGGA	1 cut(s)	61
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	1 cut(s)	574
LmnI	GCTCC	3 cut(s)	206, 231, 236
LpnPI	CCDG	5 cut(s)	67, 75, 211, 641, 690
LweI	GCATC	3 cut(s)	252, 391, 532
MaeI	CTAG	2 cut(s)	378, 706
MaeII	ACGT	2 cut(s)	72, 490
MalI	GATC	1 cut(s)	576
MbiI	CCGCTC	2 cut(s)	231, 607
MboI	GATC	1 cut(s)	574
MboII	GAAGA	1 cut(s)	30
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	3 cut(s)	10, 446, 466
MluNI	TGGCCA	1 cut(s)	501
Mly113I	GGCGCC	1 cut(s)	296
MlyI	GAGTC	2 cut(s)	593, 653
MmeI	TCCRAC	1 cut(s)	612
Mox20I	TGGCCA	1 cut(s)	501
Mph1103I	ATGCAT	1 cut(s)	486
MroI	TCCGGA	1 cut(s)	61
MscI	TGGCCA	1 cut(s)	501
MslI	CAYNNNNRTG	1 cut(s)	489
Msp20I	TGGCCA	1 cut(s)	501
MspI	CCGG	1 cut(s)	62
Mva1269I	GAATGC	1 cut(s)	634
MvnI	CGCG	2 cut(s)	285, 373
MwoI	GCNNNNNNNGC	5 cut(s)	293, 379, 507, 637, 640
NarI	GGCGCC	1 cut(s)	296
NcoI	CCATGG	1 cut(s)	502
NdeII	GATC	1 cut(s)	574
NlaIII	CATG	4 cut(s)	255, 484, 488, 506
NlaIV	GGNNCC	3 cut(s)	107, 150, 297
NsiI	ATGCAT	1 cut(s)	486
NspI	RCATGY	1 cut(s)	484
PaeI	GCATGC	1 cut(s)	484
PaeR7I	CTCGAG	1 cut(s)	593
PctI	GAATGC	1 cut(s)	634
PfeI	GAWTC	1 cut(s)	615
PkrI	GCNGC	3 cut(s)	509, 633, 642
PleI	GAGTC	2 cut(s)	592, 653
PluTI	GGCGCC	1 cut(s)	299
PpsI	GAGTC	2 cut(s)	592, 653
Ppu21I	YACGTR	1 cut(s)	73
PspN4I	GGNNCC	3 cut(s)	107, 150, 297
PspPI	GGNCC	4 cut(s)	51, 106, 148, 366
PspXI	VCTCGAGB	1 cut(s)	593
RseI	CAYNNNNRTG	1 cut(s)	489
SatI	GCNGC	3 cut(s)	508, 632, 641
Sau3AI	GATC	1 cut(s)	574
Sau96I	GGNCC	4 cut(s)	51, 106, 148, 366
SchI	GAGTC	2 cut(s)	593, 653
SfaNI	GCATC	3 cut(s)	252, 391, 532
SfcI	CTRYAG	1 cut(s)	700
SfoI	GGCGCC	1 cut(s)	297
Sfr274I	CTCGAG	1 cut(s)	593
SinI	GGWCC	2 cut(s)	51, 366
SlaI	CTCGAG	1 cut(s)	593
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
SphI	GCATGC	1 cut(s)	484
Sse9I	AATT	3 cut(s)	10, 446, 466
SsiI	CCGC	9 cut(s)	229, 283, 373, 507, 517, 605, 632, 641, 674
SspDI	GGCGCC	1 cut(s)	295
SspMI	CTAG	2 cut(s)	378, 706
StyI	CCWWGG	2 cut(s)	502, 684
TaiI	ACGT	2 cut(s)	75, 493
TaqI	TCGA	2 cut(s)	594, 646
TaqII	GACCGA	1 cut(s)	354
TasI	AATT	3 cut(s)	10, 446, 466
TauI	GCSGC	3 cut(s)	510, 634, 643
TfiI	GAWTC	1 cut(s)	615
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	73
VpaK11BI	GGWCC	2 cut(s)	51, 366
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	1 cut(s)	484
XhoI	CTCGAG	1 cut(s)	593
XspI	CTAG	2 cut(s)	378, 706
Zsp2I	ATGCAT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.