Rh5DG087800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011070
Physical Location & Seq
Reverse (-)
7738250 .. 7738474
225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG087800.1

Sequence Viewer

Length: 225 bp
ATGGCTCTGTCACCGCCCCTACGGCCCCACAAGGCCGCATGCAGCCGAGATGATTCAGGCCTTCTACGTCCCTCCGACGCCTCCCTCTCCACCCCGAAATCAGCGCGCTCTCACCACCACCACCACGAGTTCTCCGAGCTGAAGGACAAGTGTCAGAAAGTCATTGGCGCATGGGGAGCCACAGCGGGAGGAGGCACTCCGGGGACTTCAAGTACTACGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

7.72

Weight (kDa)

9.24

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 106
AciI CCGC 3 cut(s) 14, 36, 185
AcuI CTGAAG 1 cut(s) 161
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 1 cut(s) 214
AgsI TTSAA 1 cut(s) 210
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
AoxI GGCC 3 cut(s) 23, 33, 58
ApeKI GCWGC 1 cut(s) 42
AspLEI GCGC 3 cut(s) 106, 108, 170
AspS9I GGNCC 1 cut(s) 24
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 2 cut(s) 3, 104
BauI CACGAG 1 cut(s) 125
BbvI GCAGC 1 cut(s) 54
BceAI ACGGC 1 cut(s) 38
BcnI CCSGG 1 cut(s) 201
BglI GCCNNNNNGGC 1 cut(s) 22
BisI GCNGC 2 cut(s) 36, 43
BlsI GCNGC 2 cut(s) 37, 44
BmcAI AGTACT 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 2 cut(s) 26, 178
BmrFI CCNGG 1 cut(s) 201
BoxI GACNNNNGTC 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
BseDI CCNNGG 1 cut(s) 200
BsePI GCGCGC 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 204
BseXI GCAGC 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 106
BshFI GGCC 3 cut(s) 25, 35, 60
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 2 cut(s) 54, 217
BsmFI GGGAC 2 cut(s) 54, 217
BsnI GGCC 3 cut(s) 25, 35, 60
BspACI CCGC 3 cut(s) 14, 36, 185
BspANI GGCC 3 cut(s) 25, 35, 60
BspFNI CGCG 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 26, 178
BssECI CCNNGG 1 cut(s) 200
BssHII GCGCGC 1 cut(s) 104
BssNI GRCGYC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 125
Bst2BI CACGAG 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 40, 106
BstFNI CGCG 1 cut(s) 106
BstHHI GCGC 3 cut(s) 106, 108, 170
BstMWI GCNNNNNNNGC 2 cut(s) 22, 176
BstNSI RCATGY 1 cut(s) 42
BstPAI GACNNNNGTC 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 199
BstUI CGCG 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 54
BsuRI GGCC 3 cut(s) 25, 35, 60
Cac8I GCNNGC 2 cut(s) 40, 106
CfoI GCGC 3 cut(s) 106, 108, 170
Cfr13I GGNCC 1 cut(s) 24
CseI GACGC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 213
CviAII CATG 2 cut(s) 39, 171
CviJI RGCY 7 cut(s) 5, 25, 35, 45, 60, 139, 179
CviKI_1 RGCY 7 cut(s) 5, 25, 35, 45, 60, 139, 179
CviQI GTAC 1 cut(s) 213
Eco147I AGGCCT 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 161
FaeI CATG 2 cut(s) 42, 174
FaiI YATR 2 cut(s) 40, 172
FaqI GGGAC 2 cut(s) 54, 217
FatI CATG 2 cut(s) 38, 170
FauI CCCGC 1 cut(s) 178
Fnu4HI GCNGC 2 cut(s) 36, 43
Fsp4HI GCNGC 2 cut(s) 36, 43
GlaI GCGC 3 cut(s) 105, 107, 169
GluI GCNGC 2 cut(s) 36, 43
HaeIII GGCC 3 cut(s) 25, 35, 60
HapII CCGG 1 cut(s) 200
HgaI GACGC 1 cut(s) 86
HhaI GCGC 3 cut(s) 106, 108, 170
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 42, 174
Hin6I GCGC 3 cut(s) 104, 106, 168
HinP1I GCGC 3 cut(s) 104, 106, 168
HinfI GANTC 1 cut(s) 53
HpaII CCGG 1 cut(s) 200
HphI GGTGA 2 cut(s) 3, 104
Hpy188I TCNGA 3 cut(s) 76, 136, 156
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 2 cut(s) 71, 136
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 176
HpySE526I ACGT 1 cut(s) 67
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 42, 174
HspAI GCGC 3 cut(s) 104, 106, 168
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 2 cut(s) 42, 213
Lsp1109I GCAGC 1 cut(s) 54
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 9
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 5 cut(s) 82, 91, 95, 182, 185
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 201
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 2 cut(s) 22, 176
NciI CCSGG 1 cut(s) 201
NlaIII CATG 2 cut(s) 42, 174
NlaIV GGNNCC 2 cut(s) 26, 178
NmeAIII GCCGAG 1 cut(s) 71
NmuCI GTSAC 1 cut(s) 9
NspI RCATGY 1 cut(s) 42
PaeI GCATGC 1 cut(s) 42
PauI GCGCGC 1 cut(s) 104
PceI AGGCCT 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PfeI GAWTC 1 cut(s) 53
PkrI GCNGC 2 cut(s) 37, 44
PshAI GACNNNNGTC 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 26, 178
PspPI GGNCC 1 cut(s) 24
PteI GCGCGC 1 cut(s) 104
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SatI GCNGC 2 cut(s) 36, 43
Sau96I GGNCC 1 cut(s) 24
ScaI AGTACT 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 201
SetI ASST 2 cut(s) 70, 141
SphI GCATGC 1 cut(s) 42
SseBI AGGCCT 1 cut(s) 60
SsiI CCGC 3 cut(s) 14, 36, 185
StuI AGGCCT 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 199
TaiI ACGT 1 cut(s) 70
TatI WGTACW 1 cut(s) 212
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 1 cut(s) 53
TseFI GTSAC 1 cut(s) 9
TseI GCWGC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 9
XceI RCATGY 1 cut(s) 42
ZrmI AGTACT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.