Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011070

Physical Location & Seq

Genomic Coordinates Reverse (-)

1736675 .. 1737264

Gene Structure 590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46221

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGACCTCCGGCTAGTGGAGCCAGCTGACCCGACTTCCCCTAGTGGCCTCAAGAAAAAGCTACGTTCTTCCCTTTGCATTATCCCTTGCTTCACCAACTCTAAATCCCACCACCACCACGGCTCCGTCACCGCCCCTACGACCCCACAAGGCTGCAGCGCCAGCCGCCGCAGCCGAGATGATTTAGGCCTCCTACCCTCCTCCGACGCCTCCCTCTCCACCCCTAAATCAGCACGCTCTCACCACCACCACCACCACAACCACCACCACGAGTTCTCCGAGCTGAAGGACAAGTGTCGGAAAGTCATTGGTCGCATGGGGCGCCACAGCGGGAGGAGGCACTCCGGGGACTTCAAGTACGACGAGTTGAGTTACGCGCTCAACTTTGATCACGAGGACTCCAACATGGATGACGACAGCTTTCCCCTCAGAAACTTCTCTGCGAGGTTGCCGCATTCCCCGCCGGCCGAGTCCGCCGCCGCTTCTCCTTCGTCCAAGGAGATAACCGCTTGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.02

Weight (kDa)

8.65

Isoelectric Point (pI)

62.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11070 AT5G35090
prunus_persica	Prupe.7G255000_v2.0.a1
pyrus_communis	pycom02g01220 pycom15g14380
rosa_chinensis	RchiOBHm_Chr2g0086701
rosa_laevigata	RLG00000015783 RLG00000031868
rosa_multiflora	Rmu_sc0004626.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064680 Rroxscaffold_2G00154280
rosa_rugosa	Rorug01G0469000
rosa_samantha	Rh2AG021000 Rh2BG020900 Rh2CG021800 Rh2DG021600 Rh5BG087200 Rh5CG101100 Rh5DG087800
rosa_wichuraiana	Rw2G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	321
AccII	CGCG	1 cut(s)	377
AcoI	YGGCCR	1 cut(s)	465
AcuI	CTGAAG	1 cut(s)	305
AcyI	GRCGYC	2 cut(s)	207, 322
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	355
AluBI	AGCT	5 cut(s)	26, 61, 283, 420, 516
AluI	AGCT	5 cut(s)	26, 61, 283, 420, 516
AoxI	GGCC	3 cut(s)	46, 187, 465
ApeKI	GCWGC	3 cut(s)	153, 156, 171
AspLEI	GCGC	3 cut(s)	161, 324, 379
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	3 cut(s)	85, 121, 233
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	321
BauI	CACGAG	2 cut(s)	269, 392
BbvI	GCAGC	3 cut(s)	140, 168, 183
BceAI	ACGGC	1 cut(s)	136
BclI	TGATCA	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	346
BfaI	CTAG	2 cut(s)	14, 42
BfmI	CTRYAG	1 cut(s)	154
BfoI	RGCGCY	2 cut(s)	162, 325
BisI	GCNGC	8 cut(s)	154, 157, 166, 169, 172, 452, 477, 480
BlsI	GCNGC	8 cut(s)	155, 158, 167, 170, 173, 453, 478, 481
Bme1390I	CCNGG	1 cut(s)	346
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	21, 124, 323
BmrFI	CCNGG	1 cut(s)	346
BoxI	GACNNNNGTC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	346
BsaHI	GRCGYC	2 cut(s)	207, 322
BsaJI	CCNNGG	3 cut(s)	118, 345, 495
BsaXI	ACNNNNNCTCC	6 cut(s)	107, 137, 260, 290, 383, 413
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse118I	RCCGGY	1 cut(s)	463
BseDI	CCNNGG	3 cut(s)	118, 345, 495
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	442
BseRI	GAGGAG	2 cut(s)	190, 349
BseX3I	CGGCCG	1 cut(s)	465
BseXI	GCAGC	3 cut(s)	140, 168, 183
Bsh1236I	CGCG	1 cut(s)	377
Bsh1285I	CGRYCG	1 cut(s)	468
BshFI	GGCC	3 cut(s)	48, 189, 467
BshNI	GGYRCC	1 cut(s)	321
BsiEI	CGRYCG	1 cut(s)	468
BsiSI	CCGG	3 cut(s)	10, 345, 464
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	362
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	3 cut(s)	48, 189, 467
Bsp143I	GATC	1 cut(s)	388
BspANI	GGCC	3 cut(s)	48, 189, 467
BspCNI	CTCAG	1 cut(s)	441
BspFNI	CGCG	1 cut(s)	377
BspLI	GGNNCC	3 cut(s)	21, 124, 323
BspMAI	CTGCAG	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	463
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	3 cut(s)	118, 345, 495
BssMI	GATC	1 cut(s)	388
BssNI	GRCGYC	2 cut(s)	207, 322
BssSI	CACGAG	2 cut(s)	269, 392
BssT1I	CCWWGG	1 cut(s)	495
Bst2BI	CACGAG	2 cut(s)	269, 392
BstACI	GRCGYC	2 cut(s)	207, 322
BstC8I	GCNNGC	4 cut(s)	24, 163, 235, 465
BstDEI	CTNAG	1 cut(s)	428
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	415
BstFNI	CGCG	1 cut(s)	377
BstH2I	RGCGCY	2 cut(s)	162, 325
BstHHI	GCGC	3 cut(s)	161, 324, 379
BstKTI	GATC	1 cut(s)	391
BstMBI	GATC	1 cut(s)	388
BstMCI	CGRYCG	1 cut(s)	468
BstMWI	GCNNNNNNNGC	7 cut(s)	19, 162, 165, 171, 321, 460, 473
BstPAI	GACNNNNGTC	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	154
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	3 cut(s)	140, 168, 183
BstZI	CGGCCG	1 cut(s)	465
BsuRI	GGCC	3 cut(s)	48, 189, 467
BtgI	CCRYGG	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	415
Cac8I	GCNNGC	4 cut(s)	24, 163, 235, 465
CfoI	GCGC	3 cut(s)	161, 324, 379
Cfr10I	RCCGGY	1 cut(s)	463
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	2 cut(s)	316, 406
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	1 cut(s)	428
DinI	GGCGCC	1 cut(s)	323
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
EaeI	YGGCCR	1 cut(s)	465
EagI	CGGCCG	1 cut(s)	465
EciI	GGCGGA	1 cut(s)	463
EclXI	CGGCCG	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	495
Eco147I	AGGCCT	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	4
Eco52I	CGGCCG	1 cut(s)	465
Eco57I	CTGAAG	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	495
EgeI	GGCGCC	1 cut(s)	323
EheI	GGCGCC	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	2 cut(s)	319, 409
FaiI	YATR	2 cut(s)	317, 407
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	2 cut(s)	315, 405
FauI	CCCGC	2 cut(s)	323, 468
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	8 cut(s)	154, 157, 166, 169, 172, 452, 477, 480
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	8 cut(s)	154, 157, 166, 169, 172, 452, 477, 480
FspBI	CTAG	2 cut(s)	14, 42
GlaI	GCGC	3 cut(s)	160, 323, 378
GluI	GCNGC	8 cut(s)	154, 157, 166, 169, 172, 452, 477, 480
HaeII	RGCGCY	2 cut(s)	162, 325
HaeIII	GGCC	3 cut(s)	48, 189, 467
HapII	CCGG	3 cut(s)	10, 345, 464
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	3 cut(s)	161, 324, 379
Hin1I	GRCGYC	2 cut(s)	207, 322
Hin1II	CATG	2 cut(s)	319, 409
Hin6I	GCGC	3 cut(s)	159, 322, 377
HinP1I	GCGC	3 cut(s)	159, 322, 377
HinfI	GANTC	2 cut(s)	398, 470
HpaII	CCGG	3 cut(s)	10, 345, 464
HphI	GGTGA	3 cut(s)	85, 121, 233
Hpy188I	TCNGA	4 cut(s)	205, 280, 300, 431
Hpy188III	TCNNGA	2 cut(s)	52, 392
Hpy99I	CGWCG	2 cut(s)	209, 365
HpyAV	CCTTC	2 cut(s)	280, 498
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	78, 156
HpyF10VI	GCNNNNNNNGC	7 cut(s)	19, 162, 165, 171, 321, 460, 473
HpyF3I	CTNAG	1 cut(s)	428
HpySE526I	ACGT	1 cut(s)	64
Hsp92I	GRCGYC	2 cut(s)	207, 322
Hsp92II	CATG	2 cut(s)	319, 409
HspAI	GCGC	3 cut(s)	159, 322, 377
KasI	GGCGCC	1 cut(s)	321
KroI	GCCGGC	1 cut(s)	463
KroNI	GCCGGC	1 cut(s)	465
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	1 cut(s)	388
LmnI	GCTCC	2 cut(s)	19, 128
LpnPI	CCDG	5 cut(s)	23, 36, 175, 358, 477
Lsp1109I	GCAGC	3 cut(s)	140, 168, 183
MaeI	CTAG	2 cut(s)	14, 42
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	2 cut(s)	127, 371
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	1 cut(s)	60
Mly113I	GGCGCC	1 cut(s)	322
MlyI	GAGTC	2 cut(s)	392, 479
MmeI	TCCRAC	3 cut(s)	228, 278, 426
MroNI	GCCGGC	1 cut(s)	463
MspA1I	CMGCKG	2 cut(s)	26, 330
MspI	CCGG	3 cut(s)	10, 345, 464
MspR9I	CCNGG	1 cut(s)	346
Mva1269I	GAATGC	1 cut(s)	454
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	7 cut(s)	19, 162, 165, 171, 321, 460, 473
NaeI	GCCGGC	1 cut(s)	465
NarI	GGCGCC	1 cut(s)	322
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	1 cut(s)	388
NgoMIV	GCCGGC	1 cut(s)	463
NlaIII	CATG	2 cut(s)	319, 409
NlaIV	GGNNCC	3 cut(s)	21, 124, 323
NmeAIII	GCCGAG	2 cut(s)	200, 493
NmuCI	GTSAC	1 cut(s)	127
PceI	AGGCCT	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PctI	GAATGC	1 cut(s)	454
PdiI	GCCGGC	1 cut(s)	465
PkrI	GCNGC	8 cut(s)	155, 158, 167, 170, 173, 453, 478, 481
PleI	GAGTC	2 cut(s)	392, 478
PluTI	GGCGCC	1 cut(s)	325
PpsI	GAGTC	2 cut(s)	392, 478
PshAI	GACNNNNGTC	1 cut(s)	294
PspN4I	GGNNCC	3 cut(s)	21, 124, 323
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	158
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SatI	GCNGC	8 cut(s)	154, 157, 166, 169, 172, 452, 477, 480
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	392, 479
ScrFI	CCNGG	1 cut(s)	346
SetI	ASST	8 cut(s)	9, 28, 63, 67, 285, 422, 449, 518
SfcI	CTRYAG	1 cut(s)	154
SfoI	GGCGCC	1 cut(s)	323
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SseBI	AGGCCT	1 cut(s)	189
SspDI	GGCGCC	1 cut(s)	321
SspMI	CTAG	2 cut(s)	14, 42
StuI	AGGCCT	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	495
TaiI	ACGT	1 cut(s)	67
TauI	GCSGC	5 cut(s)	168, 171, 454, 479, 482
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	3 cut(s)	153, 156, 171
Tsp45I	GTSAC	1 cut(s)	127
TspGWI	ACGGA	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	2 cut(s)	14, 42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.