Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011070

Physical Location & Seq

Genomic Coordinates Reverse (-)

9815397 .. 9816104

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g14380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAGTTGGTTTCACTCTCACGTCCCCCGCATCCCGTATTCCCATCTTTCAAAACCCCGAACCCTACGTGTCCTCATCCGTCTTTCACCTCACCCACGGGCCTCCTCCTCCTCCTCCCAAATAAAAACACAAATACCACCGCCACCACCCCAACCTCTCCACACACAAATCAAAATAATGGAGAACAACCACGAACCCTGCTCCCCAAACTCTCTCAAACAAAAGCTCCGCTCCTCCCTCTGCATAATCCCATGCTTCCCTACTCCCAAAAATTACCACCACAGCGCCCTCACGGCGCCTCCCACTCCGAACGGGGCTGATAATGTCAGCCTCGTGCGGACCTCTTTATTCTCCCCTAATTCTCGGTCCTCGCGATCTAGCCATCACCACCACCATCACCATCACCACAACAACAGTCATTACGAGTTTGCGGAATTGAAAGACAAGTGCAAGAATTTGATTGGGCGCATGCATGGACGTGGCAACGGCCACGGCCACGTGGGACGGAGGCATCATTCATCCTCTGCCGATTTTAAATATGACGCACTCAGCTACGCCCTCAACTTTGATCACGAGGAGACCGACCTCGAGGATTACCCGCTCCGGAGCTTCTCCTCGAGATTGCCGCATTCGCCCCCTCAATCCTCGCAGGAGTCCTCCTCCGTGGCTTCACCGTCTGCGTCCAAGGAGATAACTGCCTATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

26.45

Weight (kDa)

9.66

Isoelectric Point (pI)

65.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11070 AT5G35090
prunus_persica	Prupe.7G255000_v2.0.a1
pyrus_communis	pycom02g01220 pycom15g14380
rosa_chinensis	RchiOBHm_Chr2g0086701
rosa_laevigata	RLG00000015783 RLG00000031868
rosa_multiflora	Rmu_sc0004626.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064680 Rroxscaffold_2G00154280
rosa_rugosa	Rorug01G0469000
rosa_samantha	Rh2AG021000 Rh2BG020900 Rh2CG021800 Rh2DG021600 Rh5BG087200 Rh5CG101100 Rh5DG087800
rosa_wichuraiana	Rw2G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	587
AccB1I	GGYRCC	1 cut(s)	295
AccBSI	CCGCTC	2 cut(s)	231, 601
AccII	CGCG	1 cut(s)	373
AccIII	TCCGGA	1 cut(s)	603
AciI	CCGC	7 cut(s)	28, 140, 229, 337, 431, 599, 626
AcoI	YGGCCR	2 cut(s)	487, 493
AcsI	RAATTY	1 cut(s)	454
AcvI	CACGTG	1 cut(s)	499
AcyI	GRCGYC	1 cut(s)	296
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	51, 439
AjiI	CACGTC	2 cut(s)	22, 479
AluBI	AGCT	4 cut(s)	226, 552, 609, 705
AluI	AGCT	4 cut(s)	226, 552, 609, 705
Alw26I	GTCTC	1 cut(s)	572
Ama87I	CYCGRG	2 cut(s)	587, 616
Aor13HI	TCCGGA	1 cut(s)	603
AoxI	GGCC	3 cut(s)	99, 487, 493
ApoI	RAATTY	1 cut(s)	454
AspLEI	GCGC	3 cut(s)	287, 298, 468
AspS9I	GGNCC	3 cut(s)	99, 339, 366
AsuHPI	GGTGA	6 cut(s)	78, 83, 377, 389, 395, 663
AvaI	CYCGRG	2 cut(s)	587, 616
AvaII	GGWCC	2 cut(s)	339, 366
BanI	GGYRCC	1 cut(s)	295
BauI	CACGAG	2 cut(s)	332, 572
BbrPI	CACGTG	1 cut(s)	499
BccI	CCATC	4 cut(s)	51, 390, 402, 408
BceAI	ACGGC	3 cut(s)	309, 502, 508
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	2 cut(s)	378, 706
BfmI	CTRYAG	1 cut(s)	700
BfoI	RGCGCY	2 cut(s)	288, 299
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	1 cut(s)	626
BlsI	GCNGC	1 cut(s)	627
Bme18I	GGWCC	2 cut(s)	339, 366
BmeT110I	CYCGRG	2 cut(s)	587, 616
BmgBI	CACGTC	2 cut(s)	22, 479
BmgT120I	GGNCC	3 cut(s)	99, 339, 366
BmiI	GGNNCC	1 cut(s)	297
BmsI	GCATC	2 cut(s)	39, 520
BplI	GAGNNNNNCTC	2 cut(s)	644, 676
BsaAI	YACGTR	2 cut(s)	68, 499
BsaHI	GRCGYC	1 cut(s)	296
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	4 cut(s)	95, 490, 663, 684
BsaWI	WCCGGW	1 cut(s)	603
BsaXI	ACNNNNNCTCC	4 cut(s)	210, 240, 283, 313
BseAI	TCCGGA	1 cut(s)	603
BseDI	CCNNGG	4 cut(s)	95, 490, 663, 684
BseGI	GGATG	3 cut(s)	30, 75, 518
BseMII	CTCAG	1 cut(s)	562
BseRI	GAGGAG	8 cut(s)	94, 97, 100, 103, 223, 590, 604, 649
Bsh1236I	CGCG	1 cut(s)	373
BshFI	GGCC	3 cut(s)	101, 489, 495
BshNI	GGYRCC	1 cut(s)	295
BsiHKCI	CYCGRG	2 cut(s)	587, 616
BsiSI	CCGG	1 cut(s)	604
BslFI	GGGAC	2 cut(s)	8, 516
BsmAI	GTCTC	1 cut(s)	572
BsmFI	GGGAC	2 cut(s)	8, 516
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	3 cut(s)	101, 489, 495
Bso31I	GGTCTC	1 cut(s)	572
BsoBI	CYCGRG	2 cut(s)	587, 616
Bsp13I	TCCGGA	1 cut(s)	603
Bsp143I	GATC	2 cut(s)	374, 568
Bsp68I	TCGCGA	1 cut(s)	373
BspACI	CCGC	7 cut(s)	28, 140, 229, 337, 431, 599, 626
BspANI	GGCC	3 cut(s)	101, 489, 495
BspCNI	CTCAG	1 cut(s)	561
BspEI	TCCGGA	1 cut(s)	603
BspFNI	CGCG	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	297
BspT107I	GGYRCC	1 cut(s)	295
BspTNI	GGTCTC	1 cut(s)	572
BsrBI	CCGCTC	2 cut(s)	231, 601
BssECI	CCNNGG	4 cut(s)	95, 490, 663, 684
BssMI	GATC	2 cut(s)	374, 568
BssNI	GRCGYC	1 cut(s)	296
BssSI	CACGAG	2 cut(s)	332, 572
BssT1I	CCWWGG	1 cut(s)	684
Bst2BI	CACGAG	2 cut(s)	332, 572
Bst4CI	ACNGT	2 cut(s)	416, 675
BstACI	GRCGYC	1 cut(s)	296
BstBAI	YACGTR	2 cut(s)	68, 499
BstC8I	GCNNGC	1 cut(s)	470
BstDEI	CTNAG	1 cut(s)	548
BstDSI	CCRYGG	3 cut(s)	95, 490, 663
BstF5I	GGATG	3 cut(s)	30, 75, 518
BstFNI	CGCG	1 cut(s)	373
BstH2I	RGCGCY	2 cut(s)	288, 299
BstHHI	GCGC	3 cut(s)	287, 298, 468
BstKTI	GATC	2 cut(s)	377, 571
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	2 cut(s)	374, 568
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 631
BstNSI	RCATGY	1 cut(s)	472
BstSFI	CTRYAG	1 cut(s)	700
BstUI	CGCG	1 cut(s)	373
BsuRI	GGCC	3 cut(s)	101, 489, 495
BtgI	CCRYGG	3 cut(s)	95, 490, 663
BtrI	CACGTC	2 cut(s)	22, 479
BtsCI	GGATG	3 cut(s)	30, 75, 518
BtuMI	TCGCGA	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	470
CfoI	GCGC	3 cut(s)	287, 298, 468
Cfr13I	GGNCC	3 cut(s)	99, 339, 366
CseI	GACGC	2 cut(s)	551, 669
CviAII	CATG	3 cut(s)	252, 469, 473
DdeI	CTNAG	1 cut(s)	548
DinI	GGCGCC	1 cut(s)	297
DpnI	GATC	2 cut(s)	376, 570
DpnII	GATC	2 cut(s)	374, 568
DraI	TTTAAA	1 cut(s)	535
EaeI	YGGCCR	2 cut(s)	487, 493
Eco130I	CCWWGG	1 cut(s)	684
Eco31I	GGTCTC	1 cut(s)	572
Eco47I	GGWCC	2 cut(s)	339, 366
Eco72I	CACGTG	1 cut(s)	499
Eco88I	CYCGRG	2 cut(s)	587, 616
EcoT14I	CCWWGG	1 cut(s)	684
EcoT22I	ATGCAT	1 cut(s)	474
EgeI	GGCGCC	1 cut(s)	297
EheI	GGCGCC	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	684
FaeI	CATG	3 cut(s)	255, 472, 476
FaiI	YATR	6 cut(s)	245, 253, 470, 474, 540, 702
FaqI	GGGAC	2 cut(s)	8, 516
FatI	CATG	3 cut(s)	251, 468, 472
FauI	CCCGC	2 cut(s)	35, 606
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	1 cut(s)	626
FokI	GGATG	3 cut(s)	17, 62, 505
Fsp4HI	GCNGC	1 cut(s)	626
FspBI	CTAG	2 cut(s)	378, 706
GlaI	GCGC	3 cut(s)	286, 297, 467
GluI	GCNGC	1 cut(s)	626
HaeII	RGCGCY	2 cut(s)	288, 299
HaeIII	GGCC	3 cut(s)	101, 489, 495
HapII	CCGG	1 cut(s)	604
HgaI	GACGC	2 cut(s)	551, 669
HhaI	GCGC	3 cut(s)	287, 298, 468
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	3 cut(s)	255, 472, 476
Hin6I	GCGC	3 cut(s)	285, 296, 466
HinP1I	GCGC	3 cut(s)	285, 296, 466
HinfI	GANTC	1 cut(s)	653
HpaII	CCGG	1 cut(s)	604
HphI	GGTGA	6 cut(s)	78, 83, 377, 389, 395, 663
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	4 cut(s)	372, 572, 604, 618
HpyCH4III	ACNGT	2 cut(s)	416, 675
HpyCH4IV	ACGT	4 cut(s)	21, 67, 478, 498
HpyCH4V	TGCA	3 cut(s)	243, 450, 472
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 631
HpyF3I	CTNAG	1 cut(s)	548
HpySE526I	ACGT	4 cut(s)	21, 67, 478, 498
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	3 cut(s)	255, 472, 476
HspAI	GCGC	3 cut(s)	285, 296, 466
KasI	GGCGCC	1 cut(s)	295
Kpn2I	TCCGGA	1 cut(s)	603
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	2 cut(s)	374, 568
LmnI	GCTCC	5 cut(s)	206, 231, 236, 606, 606
LpnPI	CCDG	3 cut(s)	211, 617, 635
LweI	GCATC	2 cut(s)	39, 520
MaeI	CTAG	2 cut(s)	378, 706
MaeII	ACGT	4 cut(s)	21, 67, 478, 498
MalI	GATC	2 cut(s)	376, 570
MbiI	CCGCTC	2 cut(s)	231, 601
MboI	GATC	2 cut(s)	374, 568
MluCI	AATT	4 cut(s)	271, 358, 434, 454
Mly113I	GGCGCC	1 cut(s)	296
MlyI	GAGTC	1 cut(s)	662
Mph1103I	ATGCAT	1 cut(s)	474
MroI	TCCGGA	1 cut(s)	603
MseI	TTAA	1 cut(s)	534
MslI	CAYNNNNRTG	1 cut(s)	477
MspI	CCGG	1 cut(s)	604
Mva1269I	GAATGC	1 cut(s)	628
MvnI	CGCG	1 cut(s)	373
MwoI	GCNNNNNNNGC	2 cut(s)	293, 631
NarI	GGCGCC	1 cut(s)	296
NdeII	GATC	2 cut(s)	374, 568
NlaIII	CATG	3 cut(s)	255, 472, 476
NlaIV	GGNNCC	1 cut(s)	297
NruI	TCGCGA	1 cut(s)	373
NsiI	ATGCAT	1 cut(s)	474
NspI	RCATGY	1 cut(s)	472
PaeI	GCATGC	1 cut(s)	472
PaeR7I	CTCGAG	2 cut(s)	587, 616
PcsI	WCGNNNNNNNCGW	2 cut(s)	370, 579
PctI	GAATGC	1 cut(s)	628
PkrI	GCNGC	1 cut(s)	627
PleI	GAGTC	1 cut(s)	661
PluTI	GGCGCC	1 cut(s)	299
PmaCI	CACGTG	1 cut(s)	499
PmlI	CACGTG	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	661
Ppu21I	YACGTR	2 cut(s)	68, 499
PspCI	CACGTG	1 cut(s)	499
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	3 cut(s)	99, 339, 366
PspXI	VCTCGAGB	1 cut(s)	587
RruI	TCGCGA	1 cut(s)	373
RseI	CAYNNNNRTG	1 cut(s)	477
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	1 cut(s)	626
Sau3AI	GATC	2 cut(s)	374, 568
Sau96I	GGNCC	3 cut(s)	99, 339, 366
SchI	GAGTC	1 cut(s)	662
SfaNI	GCATC	2 cut(s)	39, 520
SfcI	CTRYAG	1 cut(s)	700
SfoI	GGCGCC	1 cut(s)	297
Sfr274I	CTCGAG	2 cut(s)	587, 616
SinI	GGWCC	2 cut(s)	339, 366
SlaI	CTCGAG	2 cut(s)	587, 616
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	2 cut(s)	587, 616
SmoI	CTYRAG	2 cut(s)	587, 616
SphI	GCATGC	1 cut(s)	472
Sse9I	AATT	4 cut(s)	271, 358, 434, 454
SsiI	CCGC	7 cut(s)	28, 140, 229, 337, 431, 599, 626
SspDI	GGCGCC	1 cut(s)	295
SspMI	CTAG	2 cut(s)	378, 706
StyI	CCWWGG	1 cut(s)	684
TaaI	ACNGT	2 cut(s)	416, 675
TaiI	ACGT	4 cut(s)	24, 70, 481, 501
TaqI	TCGA	2 cut(s)	588, 617
TaqII	GACCGA	2 cut(s)	354, 596
TasI	AATT	4 cut(s)	271, 358, 434, 454
TauI	GCSGC	1 cut(s)	628
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TspDTI	ATGAA	1 cut(s)	507
TspGWI	ACGGA	3 cut(s)	68, 520, 652
VpaK11BI	GGWCC	2 cut(s)	339, 366
XapI	RAATTY	1 cut(s)	454
XceI	RCATGY	1 cut(s)	472
XhoI	CTCGAG	2 cut(s)	587, 616
XspI	CTAG	2 cut(s)	378, 706
Zsp2I	ATGCAT	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.