Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011070

Physical Location & Seq

Genomic Coordinates Reverse (-)

1450171 .. 1450939

Gene Structure 769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG020900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGACCTCCGGCTAGTGGAGCCAGCTGACCCGACTTCCCCTAGTGGCCTCAAGAAAAAGCTACGTTCTTCCCTTTGCATTATCCCTTGCTTCACCAACTCTAAATCCCATCACCACCACCACCACGACGGCTCCGTCACCGCCCCTACGACCCCACAAGGCTGCAGCGCCAGCGGCCGCAGCCGAGATGATTTAGGCCTCCTACGCCCCTCCGACGCCTCCCTCTCCACCCCTAAATCAGCACGCTCTCACCACCACCACCACGAGTTCTCCGAGCTGAAGGCCAAGTGTCGGAAAGTCATTGGCCGCATGGGGCGCCACAGCGGGAGGAGGCACTCCGGGGACTTCAAGTACGACGAGTTGAGTTACGCGCTCAACTTTGATCACGAGGACTCCAACATGGATGACGACAGCTTTCCCCTCAGAAACTTCTCGGCGAGGTTGCCGCATTCCCCGCCGGCCGAGTCCGCCGCCGCTTCTCCGGCGTCCAAGGAGATAACCGCTTGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

18.65

Weight (kDa)

8.65

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11070 AT5G35090
prunus_persica	Prupe.7G255000_v2.0.a1
pyrus_communis	pycom02g01220 pycom15g14380
rosa_chinensis	RchiOBHm_Chr2g0086701
rosa_laevigata	RLG00000015783 RLG00000031868
rosa_multiflora	Rmu_sc0004626.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064680 Rroxscaffold_2G00154280
rosa_rugosa	Rorug01G0469000
rosa_samantha	Rh2AG021000 Rh2BG020900 Rh2CG021800 Rh2DG021600 Rh5BG087200 Rh5CG101100 Rh5DG087800
rosa_wichuraiana	Rw2G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	315
AccII	CGCG	1 cut(s)	371
AcoI	YGGCCR	3 cut(s)	175, 304, 459
AcuI	CTGAAG	1 cut(s)	299
AcyI	GRCGYC	3 cut(s)	216, 316, 485
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	2 cut(s)	16, 291
AgsI	TTSAA	1 cut(s)	349
AluBI	AGCT	5 cut(s)	26, 61, 277, 414, 510
AluI	AGCT	5 cut(s)	26, 61, 277, 414, 510
AoxI	GGCC	6 cut(s)	46, 175, 196, 282, 304, 459
ApeKI	GCWGC	3 cut(s)	162, 165, 180
AspLEI	GCGC	3 cut(s)	170, 318, 373
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	4 cut(s)	85, 104, 130, 242
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	315
BauI	CACGAG	2 cut(s)	263, 386
BbvI	GCAGC	3 cut(s)	149, 177, 192
BccI	CCATC	1 cut(s)	117
BceAI	ACGGC	1 cut(s)	145
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	1 cut(s)	340
BfaI	CTAG	2 cut(s)	14, 42
BfmI	CTRYAG	1 cut(s)	163
BfoI	RGCGCY	2 cut(s)	171, 319
BisI	GCNGC	9 cut(s)	163, 166, 175, 178, 181, 307, 446, 471, 474
BlsI	GCNGC	9 cut(s)	164, 167, 176, 179, 182, 308, 447, 472, 475
Bme1390I	CCNGG	1 cut(s)	340
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	21, 133, 317
BmrFI	CCNGG	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	340
BsaHI	GRCGYC	3 cut(s)	216, 316, 485
BsaJI	CCNNGG	2 cut(s)	339, 489
BsaXI	ACNNNNNCTCC	6 cut(s)	116, 146, 254, 284, 377, 407
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 291
Bse118I	RCCGGY	1 cut(s)	457
BseDI	CCNNGG	2 cut(s)	339, 489
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	2 cut(s)	16, 291
BseMII	CTCAG	1 cut(s)	436
BseRI	GAGGAG	1 cut(s)	343
BseX3I	CGGCCG	2 cut(s)	175, 459
BseXI	GCAGC	3 cut(s)	149, 177, 192
Bsh1236I	CGCG	1 cut(s)	371
Bsh1285I	CGRYCG	2 cut(s)	178, 462
BshFI	GGCC	6 cut(s)	48, 177, 198, 284, 306, 461
BshNI	GGYRCC	1 cut(s)	315
BsiEI	CGRYCG	2 cut(s)	178, 462
BsiSI	CCGG	4 cut(s)	10, 339, 458, 482
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	2 cut(s)	16, 291
BsmFI	GGGAC	1 cut(s)	356
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	6 cut(s)	48, 177, 198, 284, 306, 461
Bsp143I	GATC	1 cut(s)	382
BspANI	GGCC	6 cut(s)	48, 177, 198, 284, 306, 461
BspCNI	CTCAG	1 cut(s)	435
BspFNI	CGCG	1 cut(s)	371
BspLI	GGNNCC	3 cut(s)	21, 133, 317
BspMAI	CTGCAG	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	315
BsrFI	RCCGGY	1 cut(s)	457
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	2 cut(s)	339, 489
BssMI	GATC	1 cut(s)	382
BssNI	GRCGYC	3 cut(s)	216, 316, 485
BssSI	CACGAG	2 cut(s)	263, 386
BssT1I	CCWWGG	1 cut(s)	489
Bst2BI	CACGAG	2 cut(s)	263, 386
BstACI	GRCGYC	3 cut(s)	216, 316, 485
BstC8I	GCNNGC	4 cut(s)	24, 172, 244, 459
BstDEI	CTNAG	1 cut(s)	422
BstF5I	GGATG	1 cut(s)	409
BstFNI	CGCG	1 cut(s)	371
BstH2I	RGCGCY	2 cut(s)	171, 319
BstHHI	GCGC	3 cut(s)	170, 318, 373
BstKTI	GATC	1 cut(s)	385
BstMBI	GATC	1 cut(s)	382
BstMCI	CGRYCG	2 cut(s)	178, 462
BstMWI	GCNNNNNNNGC	9 cut(s)	19, 171, 174, 180, 204, 315, 454, 467, 482
BstSCI	CCNGG	1 cut(s)	338
BstSFI	CTRYAG	1 cut(s)	163
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	3 cut(s)	149, 177, 192
BstZI	CGGCCG	2 cut(s)	175, 459
BsuRI	GGCC	6 cut(s)	48, 177, 198, 284, 306, 461
BtsCI	GGATG	1 cut(s)	409
Cac8I	GCNNGC	4 cut(s)	24, 172, 244, 459
CciNI	GCGGCCGC	1 cut(s)	175
CfoI	GCGC	3 cut(s)	170, 318, 373
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	2 cut(s)	224, 474
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	2 cut(s)	310, 400
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	1 cut(s)	422
DinI	GGCGCC	1 cut(s)	317
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
EaeI	YGGCCR	3 cut(s)	175, 304, 459
EagI	CGGCCG	2 cut(s)	175, 459
EciI	GGCGGA	1 cut(s)	457
EclXI	CGGCCG	2 cut(s)	175, 459
Eco130I	CCWWGG	1 cut(s)	489
Eco147I	AGGCCT	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	4
Eco52I	CGGCCG	2 cut(s)	175, 459
Eco57I	CTGAAG	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	489
EgeI	GGCGCC	1 cut(s)	317
EheI	GGCGCC	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	2 cut(s)	313, 403
FaiI	YATR	2 cut(s)	311, 401
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	2 cut(s)	309, 399
FauI	CCCGC	2 cut(s)	317, 462
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	9 cut(s)	163, 166, 175, 178, 181, 307, 446, 471, 474
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	9 cut(s)	163, 166, 175, 178, 181, 307, 446, 471, 474
FspBI	CTAG	2 cut(s)	14, 42
GlaI	GCGC	3 cut(s)	169, 317, 372
GluI	GCNGC	9 cut(s)	163, 166, 175, 178, 181, 307, 446, 471, 474
HaeII	RGCGCY	2 cut(s)	171, 319
HaeIII	GGCC	6 cut(s)	48, 177, 198, 284, 306, 461
HapII	CCGG	4 cut(s)	10, 339, 458, 482
HgaI	GACGC	2 cut(s)	224, 474
HhaI	GCGC	3 cut(s)	170, 318, 373
Hin1I	GRCGYC	3 cut(s)	216, 316, 485
Hin1II	CATG	2 cut(s)	313, 403
Hin6I	GCGC	3 cut(s)	168, 316, 371
HinP1I	GCGC	3 cut(s)	168, 316, 371
HinfI	GANTC	2 cut(s)	392, 464
HpaII	CCGG	4 cut(s)	10, 339, 458, 482
HphI	GGTGA	4 cut(s)	85, 104, 130, 242
Hpy188I	TCNGA	4 cut(s)	214, 274, 294, 425
Hpy188III	TCNNGA	2 cut(s)	52, 386
Hpy99I	CGWCG	3 cut(s)	131, 218, 359
HpyAV	CCTTC	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	78, 165
HpyF10VI	GCNNNNNNNGC	9 cut(s)	19, 171, 174, 180, 204, 315, 454, 467, 482
HpyF3I	CTNAG	1 cut(s)	422
HpySE526I	ACGT	1 cut(s)	64
Hsp92I	GRCGYC	3 cut(s)	216, 316, 485
Hsp92II	CATG	2 cut(s)	313, 403
HspAI	GCGC	3 cut(s)	168, 316, 371
KasI	GGCGCC	1 cut(s)	315
KroI	GCCGGC	1 cut(s)	457
KroNI	GCCGGC	1 cut(s)	459
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	1 cut(s)	382
LmnI	GCTCC	2 cut(s)	19, 137
LpnPI	CCDG	6 cut(s)	23, 36, 184, 352, 471, 495
Lsp1109I	GCAGC	3 cut(s)	149, 177, 192
MaeI	CTAG	2 cut(s)	14, 42
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	2 cut(s)	136, 365
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MboII	GAAGA	1 cut(s)	60
Mly113I	GGCGCC	1 cut(s)	316
MlyI	GAGTC	2 cut(s)	386, 473
MmeI	TCCRAC	3 cut(s)	237, 272, 420
MroNI	GCCGGC	1 cut(s)	457
MspA1I	CMGCKG	3 cut(s)	26, 174, 324
MspI	CCGG	4 cut(s)	10, 339, 458, 482
MspR9I	CCNGG	1 cut(s)	340
Mva1269I	GAATGC	1 cut(s)	448
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	9 cut(s)	19, 171, 174, 180, 204, 315, 454, 467, 482
NaeI	GCCGGC	1 cut(s)	459
NarI	GGCGCC	1 cut(s)	316
NciI	CCSGG	1 cut(s)	340
NdeII	GATC	1 cut(s)	382
NgoMIV	GCCGGC	1 cut(s)	457
NlaIII	CATG	2 cut(s)	313, 403
NlaIV	GGNNCC	3 cut(s)	21, 133, 317
NmeAIII	GCCGAG	3 cut(s)	209, 413, 487
NmuCI	GTSAC	1 cut(s)	136
NotI	GCGGCCGC	1 cut(s)	175
PceI	AGGCCT	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 270
PctI	GAATGC	1 cut(s)	448
PdiI	GCCGGC	1 cut(s)	459
PkrI	GCNGC	9 cut(s)	164, 167, 176, 179, 182, 308, 447, 472, 475
PleI	GAGTC	2 cut(s)	386, 472
PluTI	GGCGCC	1 cut(s)	319
PpsI	GAGTC	2 cut(s)	386, 472
PspN4I	GGNNCC	3 cut(s)	21, 133, 317
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SatI	GCNGC	9 cut(s)	163, 166, 175, 178, 181, 307, 446, 471, 474
Sau3AI	GATC	1 cut(s)	382
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	386, 473
ScrFI	CCNGG	1 cut(s)	340
SetI	ASST	8 cut(s)	9, 28, 63, 67, 279, 416, 443, 512
SfcI	CTRYAG	1 cut(s)	163
SfoI	GGCGCC	1 cut(s)	317
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SseBI	AGGCCT	1 cut(s)	198
SspDI	GGCGCC	1 cut(s)	315
SspMI	CTAG	2 cut(s)	14, 42
StuI	AGGCCT	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	489
TaiI	ACGT	1 cut(s)	67
TauI	GCSGC	6 cut(s)	177, 180, 309, 448, 473, 476
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	3 cut(s)	162, 165, 180
Tsp45I	GTSAC	1 cut(s)	136
TspGWI	ACGGA	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	2 cut(s)	14, 42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.