Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011070

Physical Location & Seq

Genomic Coordinates Reverse (-)

8892199 .. 8893414

Gene Structure 1216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031868

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAGCTGCAGTTTTAATTTCGTGATCGGCGAAGCCAAGCAACCAGTGACTTCAGTCTTCAGCATGAACTCGCCGCCGGCAATGGTGCACGAACCGGAACTCCAACCTAGCTGCACGGAGGCTGCAGTGCTAGCGGCCGCATGCAGCCGAGATGATTTAGGCCTTCTACGTCCCTCCGACGCCTCCCTCTCCACCCCGAAATCAGTGCGCTCTCACCACCACCACCACCACCACCACCACCATGAGTTCTCCGAGCTGAAGGACAAGTGTCGGAAAGTCATTGGCCGCATGGGGCTCCACAGCGGGAGGAGGCACTCCGGGGACTTCAAGTACTACGAGTTGAGTTACGCGCTCAACTTTGATCACGAGGACGTACCCCAACATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.48

Weight (kDa)

6.72

Isoelectric Point (pI)

61.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11070 AT5G35090
prunus_persica	Prupe.7G255000_v2.0.a1
pyrus_communis	pycom02g01220 pycom15g14380
rosa_chinensis	RchiOBHm_Chr2g0086701
rosa_laevigata	RLG00000015783 RLG00000031868
rosa_multiflora	Rmu_sc0004626.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064680 Rroxscaffold_2G00154280
rosa_rugosa	Rorug01G0469000
rosa_samantha	Rh2AG021000 Rh2BG020900 Rh2CG021800 Rh2DG021600 Rh5BG087200 Rh5CG101100 Rh5DG087800
rosa_wichuraiana	Rw2G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	350
AciI	CCGC	5 cut(s)	74, 134, 138, 286, 303
AcoI	YGGCCR	2 cut(s)	135, 283
AcuI	CTGAAG	3 cut(s)	36, 43, 278
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	2 cut(s)	332, 375
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	1 cut(s)	328
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
AluBI	AGCT	3 cut(s)	6, 111, 256
AluI	AGCT	3 cut(s)	6, 111, 256
Alw21I	GWGCWC	1 cut(s)	90
Alw44I	GTGCAC	1 cut(s)	86
AoxI	GGCC	3 cut(s)	135, 160, 283
ApaLI	GTGCAC	1 cut(s)	86
ApeKI	GCWGC	4 cut(s)	6, 111, 122, 144
AspLEI	GCGC	2 cut(s)	210, 352
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	206
AsuNHI	GCTAGC	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	297
BauI	CACGAG	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	3 cut(s)	98, 109, 156
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BclI	TGATCA	1 cut(s)	361
BcnI	CCSGG	1 cut(s)	319
BfaI	CTAG	2 cut(s)	108, 131
BfmI	CTRYAG	2 cut(s)	7, 123
BisI	GCNGC	8 cut(s)	7, 74, 112, 123, 135, 138, 145, 286
BlsI	GCNGC	8 cut(s)	8, 75, 113, 124, 136, 139, 146, 287
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	319
BmtI	GCTAGC	1 cut(s)	134
BoxI	GACNNNNGTC	2 cut(s)	53, 267
BpiI	GAAGAC	1 cut(s)	49
BpuMI	CCSGG	1 cut(s)	319
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	318
BsaWI	WCCGGW	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	322
BseSI	GKGCMC	1 cut(s)	90
BseX3I	CGGCCG	1 cut(s)	135
BseXI	GCAGC	3 cut(s)	98, 109, 156
BsgI	GTGCAG	1 cut(s)	97
Bsh1236I	CGCG	1 cut(s)	350
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	3 cut(s)	137, 162, 285
BsiEI	CGRYCG	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	3 cut(s)	77, 95, 318
BslFI	GGGAC	2 cut(s)	156, 335
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmFI	GGGAC	2 cut(s)	156, 335
BsnI	GGCC	3 cut(s)	137, 162, 285
Bsp1286I	GDGCHC	2 cut(s)	90, 297
Bsp143I	GATC	2 cut(s)	24, 361
BspACI	CCGC	5 cut(s)	74, 134, 138, 286, 303
BspANI	GGCC	3 cut(s)	137, 162, 285
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	1 cut(s)	296
BspMAI	CTGCAG	2 cut(s)	11, 127
BspOI	GCTAGC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	2 cut(s)	24, 361
BssNI	GRCGYC	1 cut(s)	180
BssSI	CACGAG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	365
BstACI	GRCGYC	1 cut(s)	180
BstC8I	GCNNGC	3 cut(s)	78, 132, 142
BstFNI	CGCG	1 cut(s)	350
BstHHI	GCGC	2 cut(s)	210, 352
BstKTI	GATC	2 cut(s)	27, 364
BstMBI	GATC	2 cut(s)	24, 361
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	144
BstPAI	GACNNNNGTC	2 cut(s)	53, 267
BstSCI	CCNGG	1 cut(s)	317
BstSFI	CTRYAG	2 cut(s)	7, 123
BstSLI	GKGCMC	1 cut(s)	90
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	3 cut(s)	98, 109, 156
BstV2I	GAAGAC	1 cut(s)	49
BstZI	CGGCCG	1 cut(s)	135
BsuRI	GGCC	3 cut(s)	137, 162, 285
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	3 cut(s)	51, 132, 210
Cac8I	GCNNGC	3 cut(s)	78, 132, 142
CciNI	GCGGCCGC	1 cut(s)	135
CfoI	GCGC	2 cut(s)	210, 352
Cfr10I	RCCGGY	1 cut(s)	76
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	331, 374
CviAII	CATG	5 cut(s)	64, 141, 242, 289, 383
CviQI	GTAC	2 cut(s)	331, 374
DpnI	GATC	2 cut(s)	26, 363
DpnII	GATC	2 cut(s)	24, 361
EaeI	YGGCCR	2 cut(s)	135, 283
EagI	CGGCCG	1 cut(s)	135
EclXI	CGGCCG	1 cut(s)	135
Eco147I	AGGCCT	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	297
Eco52I	CGGCCG	1 cut(s)	135
Eco57I	CTGAAG	3 cut(s)	36, 43, 278
EcoT38I	GRGCYC	1 cut(s)	297
FaeI	CATG	5 cut(s)	67, 144, 245, 292, 386
FaiI	YATR	5 cut(s)	65, 142, 243, 290, 384
FaqI	GGGAC	2 cut(s)	156, 335
FatI	CATG	5 cut(s)	63, 140, 241, 288, 382
FauI	CCCGC	1 cut(s)	296
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	8 cut(s)	7, 74, 112, 123, 135, 138, 145, 286
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	8 cut(s)	7, 74, 112, 123, 135, 138, 145, 286
FspBI	CTAG	2 cut(s)	108, 131
GlaI	GCGC	2 cut(s)	209, 351
GluI	GCNGC	8 cut(s)	7, 74, 112, 123, 135, 138, 145, 286
HaeIII	GGCC	3 cut(s)	137, 162, 285
HapII	CCGG	3 cut(s)	77, 95, 318
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	2 cut(s)	210, 352
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	5 cut(s)	67, 144, 245, 292, 386
Hin6I	GCGC	2 cut(s)	208, 350
HinP1I	GCGC	2 cut(s)	208, 350
HpaII	CCGG	3 cut(s)	77, 95, 318
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	3 cut(s)	178, 253, 273
Hpy188III	TCNNGA	2 cut(s)	22, 365
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	173, 253
HpyCH4IV	ACGT	2 cut(s)	169, 372
HpyCH4V	TGCA	5 cut(s)	9, 88, 114, 125, 144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpySE526I	ACGT	2 cut(s)	169, 372
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	5 cut(s)	67, 144, 245, 292, 386
HspAI	GCGC	2 cut(s)	208, 350
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	24, 361
LmnI	GCTCC	1 cut(s)	300
LpnPI	CCDG	4 cut(s)	57, 90, 108, 331
Lsp1109I	GCAGC	3 cut(s)	98, 109, 156
MaeI	CTAG	2 cut(s)	108, 131
MaeII	ACGT	2 cut(s)	169, 372
MaeIII	GTNAC	2 cut(s)	46, 344
MalI	GATC	2 cut(s)	26, 363
MboI	GATC	2 cut(s)	24, 361
MboII	GAAGA	1 cut(s)	49
MhlI	GDGCHC	2 cut(s)	90, 297
MluCI	AATT	1 cut(s)	16
MmeI	TCCRAC	3 cut(s)	127, 201, 251
MnlI	CCTC	7 cut(s)	112, 184, 193, 197, 300, 303, 361
MroNI	GCCGGC	1 cut(s)	76
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	303
MspI	CCGG	3 cut(s)	77, 95, 318
MspR9I	CCNGG	1 cut(s)	319
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	131
NaeI	GCCGGC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	319
NdeII	GATC	2 cut(s)	24, 361
NgoMIV	GCCGGC	1 cut(s)	76
NheI	GCTAGC	1 cut(s)	130
NlaIII	CATG	5 cut(s)	67, 144, 245, 292, 386
NlaIV	GGNNCC	1 cut(s)	296
NmeAIII	GCCGAG	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	46
NotI	GCGGCCGC	1 cut(s)	135
NspI	RCATGY	1 cut(s)	144
PaeI	GCATGC	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	162
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PdiI	GCCGGC	1 cut(s)	78
PkrI	GCNGC	8 cut(s)	8, 75, 113, 124, 136, 139, 146, 287
PshAI	GACNNNNGTC	2 cut(s)	53, 267
PspN4I	GGNNCC	1 cut(s)	296
PstI	CTGCAG	2 cut(s)	11, 127
RsaI	GTAC	2 cut(s)	332, 375
RsaNI	GTAC	2 cut(s)	331, 374
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	8 cut(s)	7, 74, 112, 123, 135, 138, 145, 286
Sau3AI	GATC	2 cut(s)	24, 361
ScaI	AGTACT	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	319
SduI	GDGCHC	2 cut(s)	90, 297
SetI	ASST	6 cut(s)	8, 109, 113, 172, 258, 375
SfcI	CTRYAG	2 cut(s)	7, 123
SmiMI	CAYNNNNRTG	1 cut(s)	240
SphI	GCATGC	1 cut(s)	144
Sse9I	AATT	1 cut(s)	16
SseBI	AGGCCT	1 cut(s)	162
SsiI	CCGC	5 cut(s)	74, 134, 138, 286, 303
SspMI	CTAG	2 cut(s)	108, 131
StuI	AGGCCT	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	317
TaiI	ACGT	2 cut(s)	172, 375
TasI	AATT	1 cut(s)	16
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	4 cut(s)	76, 137, 140, 288
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	3 cut(s)	51, 132, 210
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	4 cut(s)	6, 111, 122, 144
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	80
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	3 cut(s)	51, 132, 210
VneI	GTGCAC	1 cut(s)	86
XceI	RCATGY	1 cut(s)	144
XspI	CTAG	2 cut(s)	108, 131
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.