RLG00000015783

Belongs to the thioredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011070
Physical Location & Seq
Reverse (-)
1421567 .. 1424102
2536 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015783

Sequence Viewer

Length: 795 bp
ATGGACCTCCGGCTAGTGGAGCCAGCTGACCCGACTTCCCCAAGCGGCCTCAAGAAAAAGCTACGTTCTTCCCTTTGCATTATCCCTTGCTTCACCAACTCTAAATCCCACCACCACCATCACCACCACGGCTCCGTCACCGCCCCTACGACCCCACAAGGCTGCAGCGCCAGCGGCCGCAGCCGAGATGATTTAGGCCTCCTACGTCCCTCCGATGCCACCCTTTCCACCCCGAAATCAGCACGCTCTCACCACCACCACCACCACCACGAGTTCTCCGAGCTGAAGGACAAGTGTCGGAAAGTCATTGGCCGTATGGGGCGCCACAGCGGGAGGAGGCACTCCGGGGACTTCAAGTACGACGAGTTGAGTTACGCGCTCAACTTTGATCACGAGGACCCCAACATGGATGACGACAGCTTTCCCCTCAAAAACTTCTCGGCGAGGTTGCCGCATTCCCCGCCGGCCGAGTCCGCCGCCGCTTCTCCGGCGAAGGGAAATGAGACCAAGAAGCTGATTGTGGTGGACTTCACTGCTTCATGGTGTGGACCATGCCGTTTCATTGCCCCAATCTTGGCGGAGCTAGCCAGGAAGACCCATGAGGTCACATTCCTGAAGGTGGATGTTGATGAGCTGAAGAAGGTTGCTGAGGACTGGGCTGTGGAGGCAATGCCAACCTTTATGTTCCTTAGAGAAGGCAAGATTGTCGACAAGGTTGTCGGTGCTAAGAAAGATGAGCTTGTGCTTAAAGTAGGCCAGCATGCTGCTGCTGTTGCTGCAATTGCATCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

265

Amino Acids

29.08

Weight (kDa)

8.68

Isoelectric Point (pI)

31.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 169 - 248 1.8e-26 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 716
AccB1I GGYRCC 1 cut(s) 321
AccI GTMKAC 1 cut(s) 708
AccII CGCG 1 cut(s) 377
AcoI YGGCCR 3 cut(s) 175, 310, 465
AcuI CTGAAG 3 cut(s) 305, 635, 656
AcyI GRCGYC 1 cut(s) 322
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 5 cut(s) 16, 406, 494, 574, 619
AgsI TTSAA 1 cut(s) 355
AjnI CCWGG 1 cut(s) 587
AluBI AGCT 8 cut(s) 26, 61, 283, 420, 514, 583, 634, 739
AluI AGCT 8 cut(s) 26, 61, 283, 420, 514, 583, 634, 739
Alw26I GTCTC 1 cut(s) 497
AoxI GGCC 6 cut(s) 46, 175, 196, 310, 465, 754
ApeKI GCWGC 6 cut(s) 162, 165, 180, 764, 767, 776
AspLEI GCGC 3 cut(s) 170, 324, 379
AspS9I GGNCC 3 cut(s) 4, 397, 548
AsuC2I CCSGG 1 cut(s) 346
AsuHPI GGTGA 4 cut(s) 85, 113, 130, 242
AsuNHI GCTAGC 1 cut(s) 583
AvaII GGWCC 3 cut(s) 4, 397, 548
BanI GGYRCC 1 cut(s) 321
BauI CACGAG 2 cut(s) 269, 392
BbsI GAAGAC 1 cut(s) 599
BbvCI CCTCAGC 1 cut(s) 648
BbvI GCAGC 6 cut(s) 149, 177, 192, 751, 754, 763
BccI CCATC 1 cut(s) 126
BceAI ACGGC 3 cut(s) 145, 297, 540
BcgI CGANNNNNNTGC 2 cut(s) 688, 722
BciT130I CCWGG 1 cut(s) 589
BclI TGATCA 1 cut(s) 388
BcnI CCSGG 1 cut(s) 346
BcoDI GTCTC 1 cut(s) 497
BfaI CTAG 2 cut(s) 14, 584
BfmI CTRYAG 1 cut(s) 163
BfoI RGCGCY 2 cut(s) 171, 325
Bme1390I CCNGG 2 cut(s) 346, 589
Bme18I GGWCC 3 cut(s) 4, 397, 548
BmgT120I GGNCC 3 cut(s) 4, 397, 548
BmiI GGNNCC 4 cut(s) 21, 133, 323, 399
BmrFI CCNGG 2 cut(s) 346, 589
BmrI ACTGGG 1 cut(s) 664
BmsI GCATC 1 cut(s) 205
BmtI GCTAGC 1 cut(s) 587
BmuI ACTGGG 1 cut(s) 664
BoxI GACNNNNGTC 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 599
Bpu10I CCTNAGC 1 cut(s) 648
BpuEI CTTGAG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 346
BsaHI GRCGYC 1 cut(s) 322
BsaI GGTCTC 1 cut(s) 497
BsaJI CCNNGG 2 cut(s) 127, 345
BsaXI ACNNNNNCTCC 4 cut(s) 116, 146, 260, 290
Bsc4I CCNNNNNNNGG 5 cut(s) 16, 406, 494, 574, 619
Bse118I RCCGGY 1 cut(s) 463
Bse1I ACTGG 1 cut(s) 659
Bse3DI GCAATG 2 cut(s) 561, 675
BseBI CCWGG 1 cut(s) 589
BseDI CCNNGG 2 cut(s) 127, 345
BseGI GGATG 2 cut(s) 415, 628
BseLI CCNNNNNNNGG 5 cut(s) 16, 406, 494, 574, 619
BseMI GCAATG 2 cut(s) 561, 675
BseMII CTCAG 1 cut(s) 639
BseNI ACTGG 1 cut(s) 659
BseRI GAGGAG 1 cut(s) 349
BseX3I CGGCCG 2 cut(s) 175, 465
BseXI GCAGC 6 cut(s) 149, 177, 192, 751, 754, 763
Bsh1236I CGCG 1 cut(s) 377
Bsh1285I CGRYCG 2 cut(s) 178, 468
BshFI GGCC 6 cut(s) 48, 177, 198, 312, 467, 756
BshNI GGYRCC 1 cut(s) 321
BsiEI CGRYCG 2 cut(s) 178, 468
BsiSI CCGG 4 cut(s) 10, 345, 464, 488
BslFI GGGAC 2 cut(s) 192, 362
BslI CCNNNNNNNGG 5 cut(s) 16, 406, 494, 574, 619
BsmAI GTCTC 1 cut(s) 497
BsmFI GGGAC 2 cut(s) 192, 362
BsmI GAATGC 1 cut(s) 454
BsnI GGCC 6 cut(s) 48, 177, 198, 312, 467, 756
Bso31I GGTCTC 1 cut(s) 497
Bsp143I GATC 1 cut(s) 388
BspANI GGCC 6 cut(s) 48, 177, 198, 312, 467, 756
BspCNI CTCAG 1 cut(s) 640
BspFNI CGCG 1 cut(s) 377
BspLI GGNNCC 4 cut(s) 21, 133, 323, 399
BspMAI CTGCAG 1 cut(s) 167
BspOI GCTAGC 1 cut(s) 587
BspT107I GGYRCC 1 cut(s) 321
BspTNI GGTCTC 1 cut(s) 497
BsrDI GCAATG 2 cut(s) 561, 675
BsrFI RCCGGY 1 cut(s) 463
BsrI ACTGG 1 cut(s) 659
BssAI RCCGGY 1 cut(s) 463
BssECI CCNNGG 2 cut(s) 127, 345
BssMI GATC 1 cut(s) 388
BssNI GRCGYC 1 cut(s) 322
BssSI CACGAG 2 cut(s) 269, 392
Bst2BI CACGAG 2 cut(s) 269, 392
Bst2UI CCWGG 1 cut(s) 589
BstACI GRCGYC 1 cut(s) 322
BstC8I GCNNGC 7 cut(s) 24, 172, 244, 465, 585, 758, 762
BstDEI CTNAG 4 cut(s) 648, 689, 726, 792
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 2 cut(s) 415, 628
BstFNI CGCG 1 cut(s) 377
BstH2I RGCGCY 2 cut(s) 171, 325
BstHHI GCGC 3 cut(s) 170, 324, 379
BstKTI GATC 1 cut(s) 391
BstMAI GTCTC 1 cut(s) 497
BstMBI GATC 1 cut(s) 388
BstMCI CGRYCG 2 cut(s) 178, 468
BstNI CCWGG 1 cut(s) 589
BstNSI RCATGY 1 cut(s) 764
BstPAI GACNNNNGTC 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 344, 587
BstSFI CTRYAG 1 cut(s) 163
BstUI CGCG 1 cut(s) 377
BstV1I GCAGC 6 cut(s) 149, 177, 192, 751, 754, 763
BstV2I GAAGAC 1 cut(s) 599
BstZI CGGCCG 2 cut(s) 175, 465
BsuRI GGCC 6 cut(s) 48, 177, 198, 312, 467, 756
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 2 cut(s) 415, 628
BtsI GCAGTG 1 cut(s) 531
BtsIMutI CAGTG 1 cut(s) 531
Cac8I GCNNGC 7 cut(s) 24, 172, 244, 465, 585, 758, 762
CciNI GCGGCCGC 1 cut(s) 175
CfoI GCGC 3 cut(s) 170, 324, 379
Cfr10I RCCGGY 1 cut(s) 463
Cfr13I GGNCC 3 cut(s) 4, 397, 548
Csp6I GTAC 1 cut(s) 358
CviAII CATG 5 cut(s) 406, 540, 552, 599, 761
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 4 cut(s) 648, 689, 726, 792
DinI GGCGCC 1 cut(s) 323
DpnI GATC 1 cut(s) 390
DpnII GATC 1 cut(s) 388
DrdI GACNNNNNNGTC 1 cut(s) 716
DseDI GACNNNNNNGTC 1 cut(s) 716
EaeI YGGCCR 3 cut(s) 175, 310, 465
EagI CGGCCG 2 cut(s) 175, 465
EciI GGCGGA 2 cut(s) 463, 593
EclXI CGGCCG 2 cut(s) 175, 465
Eco147I AGGCCT 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 497
Eco47I GGWCC 3 cut(s) 4, 397, 548
Eco52I CGGCCG 2 cut(s) 175, 465
Eco57I CTGAAG 3 cut(s) 305, 635, 656
EcoO109I RGGNCCY 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 587
EgeI GGCGCC 1 cut(s) 323
EheI GGCGCC 1 cut(s) 323
FaeI CATG 5 cut(s) 409, 543, 555, 602, 764
FaiI YATR 7 cut(s) 317, 407, 541, 553, 600, 683, 762
FalI AAGNNNNNCTT 2 cut(s) 723, 755
FaqI GGGAC 2 cut(s) 192, 362
FatI CATG 5 cut(s) 405, 539, 551, 598, 760
FauI CCCGC 2 cut(s) 323, 468
FbaI TGATCA 1 cut(s) 388
FblI GTMKAC 1 cut(s) 708
FokI GGATG 2 cut(s) 422, 635
FspBI CTAG 2 cut(s) 14, 584
GlaI GCGC 3 cut(s) 169, 323, 378
HaeII RGCGCY 2 cut(s) 171, 325
HaeIII GGCC 6 cut(s) 48, 177, 198, 312, 467, 756
HapII CCGG 4 cut(s) 10, 345, 464, 488
HhaI GCGC 3 cut(s) 170, 324, 379
Hin1I GRCGYC 1 cut(s) 322
Hin1II CATG 5 cut(s) 409, 543, 555, 602, 764
Hin6I GCGC 3 cut(s) 168, 322, 377
HinP1I GCGC 3 cut(s) 168, 322, 377
HincII GTYRAC 1 cut(s) 709
HindII GTYRAC 1 cut(s) 709
HinfI GANTC 1 cut(s) 470
HpaII CCGG 4 cut(s) 10, 345, 464, 488
HphI GGTGA 4 cut(s) 85, 113, 130, 242
Hpy166II GTNNAC 3 cut(s) 526, 548, 709
Hpy188I TCNGA 3 cut(s) 214, 280, 300
Hpy188III TCNNGA 3 cut(s) 52, 392, 613
Hpy8I GTNNAC 3 cut(s) 526, 548, 709
Hpy99I CGWCG 1 cut(s) 365
HpyAV CCTTC 5 cut(s) 280, 487, 610, 634, 689
HpyCH4IV ACGT 2 cut(s) 64, 205
HpyCH4V TGCA 4 cut(s) 78, 165, 779, 785
HpyF3I CTNAG 4 cut(s) 648, 689, 726, 792
HpySE526I ACGT 2 cut(s) 64, 205
Hsp92I GRCGYC 1 cut(s) 322
Hsp92II CATG 5 cut(s) 409, 543, 555, 602, 764
HspAI GCGC 3 cut(s) 168, 322, 377
KasI GGCGCC 1 cut(s) 321
KroI GCCGGC 1 cut(s) 463
KroNI GCCGGC 1 cut(s) 465
Ksp22I TGATCA 1 cut(s) 388
Kzo9I GATC 1 cut(s) 388
LmnI GCTCC 3 cut(s) 19, 137, 580
Lsp1109I GCAGC 6 cut(s) 149, 177, 192, 751, 754, 763
LweI GCATC 1 cut(s) 205
MaeI CTAG 2 cut(s) 14, 584
MaeII ACGT 2 cut(s) 64, 205
MaeIII GTNAC 3 cut(s) 136, 371, 604
MalI GATC 1 cut(s) 390
MboI GATC 1 cut(s) 388
MboII GAAGA 3 cut(s) 60, 604, 649
MfeI CAATTG 1 cut(s) 780
MluCI AATT 1 cut(s) 780
Mly113I GGCGCC 1 cut(s) 322
MlyI GAGTC 1 cut(s) 479
MmeI TCCRAC 1 cut(s) 278
MroNI GCCGGC 1 cut(s) 463
MseI TTAA 1 cut(s) 747
MspA1I CMGCKG 3 cut(s) 26, 174, 330
MspI CCGG 4 cut(s) 10, 345, 464, 488
MspR9I CCNGG 2 cut(s) 346, 589
MunI CAATTG 1 cut(s) 780
Mva1269I GAATGC 1 cut(s) 454
MvaI CCWGG 1 cut(s) 589
MvnI CGCG 1 cut(s) 377
NaeI GCCGGC 1 cut(s) 465
NarI GGCGCC 1 cut(s) 322
NciI CCSGG 1 cut(s) 346
NdeII GATC 1 cut(s) 388
NgoMIV GCCGGC 1 cut(s) 463
NheI GCTAGC 1 cut(s) 583
NlaIII CATG 5 cut(s) 409, 543, 555, 602, 764
NlaIV GGNNCC 4 cut(s) 21, 133, 323, 399
NmeAIII GCCGAG 3 cut(s) 209, 419, 493
NmuCI GTSAC 2 cut(s) 136, 604
NotI GCGGCCGC 1 cut(s) 175
NspI RCATGY 1 cut(s) 764
PaeI GCATGC 1 cut(s) 764
PceI AGGCCT 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PctI GAATGC 1 cut(s) 454
PdiI GCCGGC 1 cut(s) 465
PleI GAGTC 1 cut(s) 478
PluTI GGCGCC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 478
PpuMI RGGWCCY 1 cut(s) 397
PshAI GACNNNNGTC 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 1 cut(s) 587
PspGI CCWGG 1 cut(s) 587
PspN4I GGNNCC 4 cut(s) 21, 133, 323, 399
PspPI GGNCC 3 cut(s) 4, 397, 548
PspPPI RGGWCCY 1 cut(s) 397
PstI CTGCAG 1 cut(s) 167
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SalI GTCGAC 1 cut(s) 707
SaqAI TTAA 1 cut(s) 747
Sau3AI GATC 1 cut(s) 388
Sau96I GGNCC 3 cut(s) 4, 397, 548
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 2 cut(s) 346, 589
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 163
SfoI GGCGCC 1 cut(s) 323
SinI GGWCC 3 cut(s) 4, 397, 548
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SphI GCATGC 1 cut(s) 764
Sse9I AATT 1 cut(s) 780
SseBI AGGCCT 1 cut(s) 198
SspDI GGCGCC 1 cut(s) 321
SspMI CTAG 2 cut(s) 14, 584
StuI AGGCCT 1 cut(s) 198
StyD4I CCNGG 2 cut(s) 344, 587
TaiI ACGT 2 cut(s) 67, 208
TaqI TCGA 1 cut(s) 708
TasI AATT 1 cut(s) 780
TauI GCSGC 6 cut(s) 48, 177, 180, 454, 479, 482
Tru1I TTAA 1 cut(s) 747
Tru9I TTAA 1 cut(s) 747
TscAI CASTG 1 cut(s) 538
TseFI GTSAC 2 cut(s) 136, 604
TseI GCWGC 6 cut(s) 162, 165, 180, 764, 767, 776
Tsp45I GTSAC 2 cut(s) 136, 604
TspDTI ATGAA 2 cut(s) 528, 550
TspGWI ACGGA 1 cut(s) 124
TspRI CASTG 1 cut(s) 538
VpaK11BI GGWCC 3 cut(s) 4, 397, 548
XceI RCATGY 1 cut(s) 764
XmiI GTMKAC 1 cut(s) 708
XspI CTAG 2 cut(s) 14, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.