Rh5BG087200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011070
Physical Location & Seq
Reverse (-)
7567836 .. 7568324
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG087200.1

Sequence Viewer

Length: 204 bp
ATGCCTCCCTCTCCACCCCGAAATCAGCGCACTCTCGATCGCGACCACCACCACGAGTTCTCCGAGCTAAAGGACAAGTGTCGGAAAGTCATTGGCCGCATGGGGCGCCACAGCGGGAGGAGGCACGCCAGGGACTTCAAGTACGACGAGTTGAGTTACGGGCTCAATTTTGATCAGGAGGACTCCGATCCAGTGATTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.95

Weight (kDa)

7.98

Isoelectric Point (pI)

53.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 105
AccII CGCG 1 cut(s) 42
AciI CCGC 2 cut(s) 97, 114
AclWI GGATC 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 94
AcyI GRCGYC 1 cut(s) 106
AfaI GTAC 1 cut(s) 143
AgsI TTSAA 1 cut(s) 139
AjnI CCWGG 1 cut(s) 128
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
AlwI GGATC 1 cut(s) 182
AoxI GGCC 1 cut(s) 94
AspLEI GCGC 2 cut(s) 30, 108
BanI GGYRCC 1 cut(s) 105
BanII GRGCYC 1 cut(s) 165
BauI CACGAG 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 130
BclI TGATCA 1 cut(s) 172
BfoI RGCGCY 1 cut(s) 109
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 130
BoxI GACNNNNGTC 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bse1I ACTGG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 191
BseRI GAGGAG 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 42
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 1 cut(s) 96
BshNI GGYRCC 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 40
BslFI GGGAC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 3 cut(s) 37, 172, 187
Bsp68I TCGCGA 1 cut(s) 42
BspACI CCGC 2 cut(s) 97, 114
BspANI GGCC 1 cut(s) 96
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 107
BspPI GGATC 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 105
BsrI ACTGG 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 3 cut(s) 37, 172, 187
BssNI GRCGYC 1 cut(s) 106
BssSI CACGAG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 130
BstACI GRCGYC 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 126
BstFNI CGCG 1 cut(s) 42
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 2 cut(s) 30, 108
BstKTI GATC 3 cut(s) 40, 175, 190
BstMBI GATC 3 cut(s) 37, 172, 187
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNI CCWGG 1 cut(s) 130
BstPAI GACNNNNGTC 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 128
BstUI CGCG 1 cut(s) 42
BsuRI GGCC 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 198
BtuMI TCGCGA 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 126
CfoI GCGC 2 cut(s) 30, 108
Csp6I GTAC 1 cut(s) 142
CviAII CATG 1 cut(s) 100
CviJI RGCY 3 cut(s) 67, 96, 163
CviKI_1 RGCY 3 cut(s) 67, 96, 163
CviQI GTAC 1 cut(s) 142
DinI GGCGCC 1 cut(s) 107
DpnI GATC 3 cut(s) 39, 174, 189
DpnII GATC 3 cut(s) 37, 172, 187
EaeI YGGCCR 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 165
EgeI GGCGCC 1 cut(s) 107
EheI GGCGCC 1 cut(s) 107
FaeI CATG 1 cut(s) 103
FaiI YATR 1 cut(s) 101
FaqI GGGAC 1 cut(s) 146
FatI CATG 1 cut(s) 99
FauI CCCGC 1 cut(s) 107
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 97
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 97
GlaI GCGC 2 cut(s) 29, 107
GluI GCNGC 1 cut(s) 97
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 1 cut(s) 96
HhaI GCGC 2 cut(s) 30, 108
Hin1I GRCGYC 1 cut(s) 106
Hin1II CATG 1 cut(s) 103
Hin6I GCGC 2 cut(s) 28, 106
HinP1I GCGC 2 cut(s) 28, 106
HinfI GANTC 1 cut(s) 182
Hpy188I TCNGA 3 cut(s) 64, 84, 187
Hpy188III TCNNGA 3 cut(s) 35, 41, 176
Hpy99I CGWCG 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 106
Hsp92II CATG 1 cut(s) 103
HspAI GCGC 2 cut(s) 28, 106
KasI GGCGCC 1 cut(s) 105
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 3 cut(s) 37, 172, 187
LpnPI CCDG 3 cut(s) 115, 142, 161
MaeIII GTNAC 1 cut(s) 155
MalI GATC 3 cut(s) 39, 174, 189
MboI GATC 3 cut(s) 37, 172, 187
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 1 cut(s) 166
Mly113I GGCGCC 1 cut(s) 106
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 5 cut(s) 15, 19, 111, 114, 172
MspA1I CMGCKG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 105
NarI GGCGCC 1 cut(s) 106
NdeII GATC 3 cut(s) 37, 172, 187
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 107
NruI TCGCGA 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PkrI GCNGC 1 cut(s) 98
Ple19I CGATCG 1 cut(s) 40
PleI GAGTC 1 cut(s) 176
PluTI GGCGCC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 176
PshAI GACNNNNGTC 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 107
PvuI CGATCG 1 cut(s) 40
RruI TCGCGA 1 cut(s) 42
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 3 cut(s) 37, 172, 187
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 1 cut(s) 165
SetI ASST 1 cut(s) 69
SfoI GGCGCC 1 cut(s) 107
Sse9I AATT 1 cut(s) 166
SsiI CCGC 2 cut(s) 97, 114
SspDI GGCGCC 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 128
TaqI TCGA 1 cut(s) 36
TasI AATT 1 cut(s) 166
TauI GCSGC 1 cut(s) 99
TscAI CASTG 1 cut(s) 198
TspRI CASTG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.