Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004626.1

Orthogroup ID

OG0011070

Physical Location & Seq

Genomic Coordinates Forward (+)

13979 .. 14509

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004626.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggacctccggctagtggagccagctgacccgacttcccctagtggcctcaagaaaaagctacgttcttccctttgcattatcccttgcttcaccaactctaaatcccatcaccaccaccaccaccacggctccgtcaccgcccctacgaccccacaaggctgcagcgccagcagccgcagccgagatgatttaggcctcctaccctcctccgacgcctccctctccacccctaaatcagcacgctctcaccaccaccaccaccaccacaaccaccaccacgagttctccgagctgaaggacaagtgtcggaaagtcattggtcgcatggggcgccacagcgggaggaggcactccggggacttcaagtacgacgagttgagttacgcgctcaactttgatcacgaggactccaacatggatgacgacagctttcccctcagaaacttctctgcgaggttgccgcattccccgccggccgagtccgcggccgcttctccttcgtccaaggagataaccgcttgtagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.5

Weight (kDa)

8.33

Isoelectric Point (pI)

59.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11070 AT5G35090
prunus_persica	Prupe.7G255000_v2.0.a1
pyrus_communis	pycom02g01220 pycom15g14380
rosa_chinensis	RchiOBHm_Chr2g0086701
rosa_laevigata	RLG00000015783 RLG00000031868
rosa_multiflora	Rmu_sc0004626.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064680 Rroxscaffold_2G00154280
rosa_rugosa	Rorug01G0469000
rosa_samantha	Rh2AG021000 Rh2BG020900 Rh2CG021800 Rh2DG021600 Rh5BG087200 Rh5CG101100 Rh5DG087800
rosa_wichuraiana	Rw2G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	333
AccII	CGCG	2 cut(s)	389, 488
AciI	CCGC	9 cut(s)	141, 178, 342, 464, 473, 486, 488, 492, 519
AcoI	YGGCCR	2 cut(s)	477, 489
AcuI	CTGAAG	1 cut(s)	317
AcyI	GRCGYC	2 cut(s)	216, 334
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	367
AluBI	AGCT	5 cut(s)	26, 61, 295, 432, 528
AluI	AGCT	5 cut(s)	26, 61, 295, 432, 528
AoxI	GGCC	4 cut(s)	46, 196, 477, 489
ApeKI	GCWGC	4 cut(s)	162, 165, 174, 180
AspLEI	GCGC	3 cut(s)	170, 336, 391
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	358
AsuHPI	GGTGA	4 cut(s)	85, 104, 130, 242
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	333
BauI	CACGAG	2 cut(s)	281, 404
BbvI	GCAGC	4 cut(s)	149, 177, 186, 192
BccI	CCATC	1 cut(s)	117
BceAI	ACGGC	1 cut(s)	145
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	1 cut(s)	358
BfaI	CTAG	2 cut(s)	14, 42
BfmI	CTRYAG	1 cut(s)	163
BfoI	RGCGCY	2 cut(s)	171, 337
BisI	GCNGC	8 cut(s)	163, 166, 175, 178, 181, 464, 489, 492
BlsI	GCNGC	8 cut(s)	164, 167, 176, 179, 182, 465, 490, 493
Bme1390I	CCNGG	1 cut(s)	358
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	21, 133, 335
BmrFI	CCNGG	1 cut(s)	358
BoxI	GACNNNNGTC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	358
BsaHI	GRCGYC	2 cut(s)	216, 334
BsaJI	CCNNGG	4 cut(s)	127, 357, 486, 507
BsaXI	ACNNNNNCTCC	6 cut(s)	116, 146, 272, 302, 395, 425
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse118I	RCCGGY	1 cut(s)	475
BseDI	CCNNGG	4 cut(s)	127, 357, 486, 507
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	454
BseRI	GAGGAG	2 cut(s)	199, 361
BseX3I	CGGCCG	2 cut(s)	477, 489
BseXI	GCAGC	4 cut(s)	149, 177, 186, 192
Bsh1236I	CGCG	2 cut(s)	389, 488
Bsh1285I	CGRYCG	2 cut(s)	480, 492
BshFI	GGCC	4 cut(s)	48, 198, 479, 491
BshNI	GGYRCC	1 cut(s)	333
BsiEI	CGRYCG	2 cut(s)	480, 492
BsiSI	CCGG	3 cut(s)	10, 357, 476
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	4 cut(s)	48, 198, 479, 491
Bsp143I	GATC	1 cut(s)	400
BspACI	CCGC	9 cut(s)	141, 178, 342, 464, 473, 486, 488, 492, 519
BspANI	GGCC	4 cut(s)	48, 198, 479, 491
BspCNI	CTCAG	1 cut(s)	453
BspFNI	CGCG	2 cut(s)	389, 488
BspLI	GGNNCC	3 cut(s)	21, 133, 335
BspMAI	CTGCAG	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	333
BsrFI	RCCGGY	1 cut(s)	475
BssAI	RCCGGY	1 cut(s)	475
BssECI	CCNNGG	4 cut(s)	127, 357, 486, 507
BssMI	GATC	1 cut(s)	400
BssNI	GRCGYC	2 cut(s)	216, 334
BssSI	CACGAG	2 cut(s)	281, 404
BssT1I	CCWWGG	1 cut(s)	507
Bst2BI	CACGAG	2 cut(s)	281, 404
BstACI	GRCGYC	2 cut(s)	216, 334
BstC8I	GCNNGC	4 cut(s)	24, 172, 244, 477
BstDEI	CTNAG	1 cut(s)	440
BstDSI	CCRYGG	2 cut(s)	127, 486
BstF5I	GGATG	1 cut(s)	427
BstFNI	CGCG	2 cut(s)	389, 488
BstH2I	RGCGCY	2 cut(s)	171, 337
BstHHI	GCGC	3 cut(s)	170, 336, 391
BstKTI	GATC	1 cut(s)	403
BstMBI	GATC	1 cut(s)	400
BstMCI	CGRYCG	2 cut(s)	480, 492
BstMWI	GCNNNNNNNGC	7 cut(s)	19, 171, 174, 180, 333, 472, 485
BstPAI	GACNNNNGTC	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	356
BstSFI	CTRYAG	1 cut(s)	163
BstUI	CGCG	2 cut(s)	389, 488
BstV1I	GCAGC	4 cut(s)	149, 177, 186, 192
BstZI	CGGCCG	2 cut(s)	477, 489
BsuRI	GGCC	4 cut(s)	48, 198, 479, 491
BtgI	CCRYGG	2 cut(s)	127, 486
BtsCI	GGATG	1 cut(s)	427
Cac8I	GCNNGC	4 cut(s)	24, 172, 244, 477
CciNI	GCGGCCGC	1 cut(s)	489
CfoI	GCGC	3 cut(s)	170, 336, 391
Cfr10I	RCCGGY	1 cut(s)	475
Cfr13I	GGNCC	1 cut(s)	4
Cfr42I	CCGCGG	1 cut(s)	489
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	2 cut(s)	328, 418
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	1 cut(s)	440
DinI	GGCGCC	1 cut(s)	335
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
EaeI	YGGCCR	2 cut(s)	477, 489
EagI	CGGCCG	2 cut(s)	477, 489
EclXI	CGGCCG	2 cut(s)	477, 489
Eco130I	CCWWGG	1 cut(s)	507
Eco147I	AGGCCT	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	4
Eco52I	CGGCCG	2 cut(s)	477, 489
Eco57I	CTGAAG	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	507
EgeI	GGCGCC	1 cut(s)	335
EheI	GGCGCC	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	2 cut(s)	331, 421
FaiI	YATR	2 cut(s)	329, 419
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	2 cut(s)	327, 417
FauI	CCCGC	2 cut(s)	335, 480
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	8 cut(s)	163, 166, 175, 178, 181, 464, 489, 492
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	8 cut(s)	163, 166, 175, 178, 181, 464, 489, 492
FspBI	CTAG	2 cut(s)	14, 42
GlaI	GCGC	3 cut(s)	169, 335, 390
GluI	GCNGC	8 cut(s)	163, 166, 175, 178, 181, 464, 489, 492
HaeII	RGCGCY	2 cut(s)	171, 337
HaeIII	GGCC	4 cut(s)	48, 198, 479, 491
HapII	CCGG	3 cut(s)	10, 357, 476
HgaI	GACGC	1 cut(s)	224
HhaI	GCGC	3 cut(s)	170, 336, 391
Hin1I	GRCGYC	2 cut(s)	216, 334
Hin1II	CATG	2 cut(s)	331, 421
Hin6I	GCGC	3 cut(s)	168, 334, 389
HinP1I	GCGC	3 cut(s)	168, 334, 389
HinfI	GANTC	2 cut(s)	410, 482
HpaII	CCGG	3 cut(s)	10, 357, 476
HphI	GGTGA	4 cut(s)	85, 104, 130, 242
Hpy188I	TCNGA	4 cut(s)	214, 292, 312, 443
Hpy188III	TCNNGA	2 cut(s)	52, 404
Hpy99I	CGWCG	2 cut(s)	218, 377
HpyAV	CCTTC	2 cut(s)	292, 510
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	78, 165
HpyF10VI	GCNNNNNNNGC	7 cut(s)	19, 171, 174, 180, 333, 472, 485
HpyF3I	CTNAG	1 cut(s)	440
HpySE526I	ACGT	1 cut(s)	64
Hsp92I	GRCGYC	2 cut(s)	216, 334
Hsp92II	CATG	2 cut(s)	331, 421
HspAI	GCGC	3 cut(s)	168, 334, 389
KasI	GGCGCC	1 cut(s)	333
KroI	GCCGGC	1 cut(s)	475
KroNI	GCCGGC	1 cut(s)	477
Ksp22I	TGATCA	1 cut(s)	400
KspI	CCGCGG	1 cut(s)	489
Kzo9I	GATC	1 cut(s)	400
LmnI	GCTCC	2 cut(s)	19, 137
LpnPI	CCDG	5 cut(s)	23, 36, 184, 370, 489
Lsp1109I	GCAGC	4 cut(s)	149, 177, 186, 192
MaeI	CTAG	2 cut(s)	14, 42
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	2 cut(s)	136, 383
MalI	GATC	1 cut(s)	402
MboI	GATC	1 cut(s)	400
MboII	GAAGA	1 cut(s)	60
Mly113I	GGCGCC	1 cut(s)	334
MlyI	GAGTC	2 cut(s)	404, 491
MmeI	TCCRAC	3 cut(s)	237, 290, 438
MroNI	GCCGGC	1 cut(s)	475
MspA1I	CMGCKG	3 cut(s)	26, 342, 488
MspI	CCGG	3 cut(s)	10, 357, 476
MspR9I	CCNGG	1 cut(s)	358
Mva1269I	GAATGC	1 cut(s)	466
MvnI	CGCG	2 cut(s)	389, 488
MwoI	GCNNNNNNNGC	7 cut(s)	19, 171, 174, 180, 333, 472, 485
NaeI	GCCGGC	1 cut(s)	477
NarI	GGCGCC	1 cut(s)	334
NciI	CCSGG	1 cut(s)	358
NdeII	GATC	1 cut(s)	400
NgoMIV	GCCGGC	1 cut(s)	475
NlaIII	CATG	2 cut(s)	331, 421
NlaIV	GGNNCC	3 cut(s)	21, 133, 335
NmeAIII	GCCGAG	2 cut(s)	209, 505
NmuCI	GTSAC	1 cut(s)	136
NotI	GCGGCCGC	1 cut(s)	489
PceI	AGGCCT	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PctI	GAATGC	1 cut(s)	466
PdiI	GCCGGC	1 cut(s)	477
PkrI	GCNGC	8 cut(s)	164, 167, 176, 179, 182, 465, 490, 493
PleI	GAGTC	2 cut(s)	404, 490
PluTI	GGCGCC	1 cut(s)	337
PpsI	GAGTC	2 cut(s)	404, 490
PshAI	GACNNNNGTC	1 cut(s)	306
PspN4I	GGNNCC	3 cut(s)	21, 133, 335
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SacII	CCGCGG	1 cut(s)	489
SatI	GCNGC	8 cut(s)	163, 166, 175, 178, 181, 464, 489, 492
Sau3AI	GATC	1 cut(s)	400
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	404, 491
ScrFI	CCNGG	1 cut(s)	358
SetI	ASST	8 cut(s)	9, 28, 63, 67, 297, 434, 461, 530
SfcI	CTRYAG	1 cut(s)	163
SfoI	GGCGCC	1 cut(s)	335
Sfr303I	CCGCGG	1 cut(s)	489
SgrBI	CCGCGG	1 cut(s)	489
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SseBI	AGGCCT	1 cut(s)	198
SsiI	CCGC	9 cut(s)	141, 178, 342, 464, 473, 486, 488, 492, 519
SspDI	GGCGCC	1 cut(s)	333
SspMI	CTAG	2 cut(s)	14, 42
StuI	AGGCCT	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	356
StyI	CCWWGG	1 cut(s)	507
TaiI	ACGT	1 cut(s)	67
TauI	GCSGC	4 cut(s)	180, 466, 491, 494
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	4 cut(s)	162, 165, 174, 180
Tsp45I	GTSAC	1 cut(s)	136
TspGWI	ACGGA	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	2 cut(s)	14, 42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.