Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011070

Physical Location & Seq

Genomic Coordinates Forward (+)

86510385 .. 86510786

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00064680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCTCTGTCACCACCCCTACGACCCCACAAGGCTGCAGCGCCAGCGGCCGCATGCAGCCGAGATGATTTAGGCCTTCTACGTCCCTCCGACGCCTCCCTCTCCACCCCGAAATCAGCGCGCTCTCACCACCACCACCACGAGTTGTCAGAGCTGAAGGACAAGTGTCGGAAAGTCATTGGCCGCATGGGGCGCCACAGCAGGAGGAGGCAGACGTACCCCAACATGGATGACGACAGCTTTCCCCTCAGAAACTTCTCGGCGAGGTTGCCGCATTCCCCGCCGACCGAGTCCGCTGCCGCTTCTGCGGCATCCAAGGAGATAACCGCTAGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.21

Weight (kDa)

10.12

Isoelectric Point (pI)

75.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11070 AT5G35090
prunus_persica	Prupe.7G255000_v2.0.a1
pyrus_communis	pycom02g01220 pycom15g14380
rosa_chinensis	RchiOBHm_Chr2g0086701
rosa_laevigata	RLG00000015783 RLG00000031868
rosa_multiflora	Rmu_sc0004626.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064680 Rroxscaffold_2G00154280
rosa_rugosa	Rorug01G0469000
rosa_samantha	Rh2AG021000 Rh2BG020900 Rh2CG021800 Rh2DG021600 Rh5BG087200 Rh5CG101100 Rh5DG087800
rosa_wichuraiana	Rw2G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	192
AccII	CGCG	1 cut(s)	121
AciI	CCGC	9 cut(s)	47, 51, 184, 272, 281, 294, 300, 308, 327
AcoI	YGGCCR	2 cut(s)	48, 181
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	2 cut(s)	93, 193
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	226
AluBI	AGCT	3 cut(s)	154, 240, 336
AluI	AGCT	3 cut(s)	154, 240, 336
AoxI	GGCC	3 cut(s)	48, 73, 181
ApeKI	GCWGC	4 cut(s)	35, 38, 57, 296
AspLEI	GCGC	4 cut(s)	43, 121, 123, 195
AsuHPI	GGTGA	2 cut(s)	3, 119
BanI	GGYRCC	1 cut(s)	192
BauI	CACGAG	1 cut(s)	140
BbvI	GCAGC	4 cut(s)	22, 50, 69, 283
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	36
BfoI	RGCGCY	2 cut(s)	44, 196
BmiI	GGNNCC	1 cut(s)	194
BmsI	GCATC	1 cut(s)	320
BoxI	GACNNNNGTC	1 cut(s)	165
BsaHI	GRCGYC	2 cut(s)	93, 193
BsaJI	CCNNGG	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	2 cut(s)	235, 311
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	262
BsePI	GCGCGC	1 cut(s)	119
BseRI	GAGGAG	1 cut(s)	220
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	4 cut(s)	22, 50, 69, 283
Bsh1236I	CGCG	1 cut(s)	121
Bsh1285I	CGRYCG	2 cut(s)	51, 288
BshFI	GGCC	3 cut(s)	50, 75, 183
BshNI	GGYRCC	1 cut(s)	192
BsiEI	CGRYCG	2 cut(s)	51, 288
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	3 cut(s)	50, 75, 183
BspACI	CCGC	9 cut(s)	47, 51, 184, 272, 281, 294, 300, 308, 327
BspANI	GGCC	3 cut(s)	50, 75, 183
BspCNI	CTCAG	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	194
BspMAI	CTGCAG	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	315
BssHII	GCGCGC	1 cut(s)	119
BssNI	GRCGYC	2 cut(s)	93, 193
BssSI	CACGAG	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	140
BstACI	GRCGYC	2 cut(s)	93, 193
BstC8I	GCNNGC	3 cut(s)	45, 55, 121
BstDEI	CTNAG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	235, 311
BstFNI	CGCG	1 cut(s)	121
BstH2I	RGCGCY	2 cut(s)	44, 196
BstHHI	GCGC	4 cut(s)	43, 121, 123, 195
BstMCI	CGRYCG	2 cut(s)	51, 288
BstMWI	GCNNNNNNNGC	6 cut(s)	44, 47, 192, 280, 305, 308
BstNSI	RCATGY	1 cut(s)	57
BstPAI	GACNNNNGTC	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	36
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	4 cut(s)	22, 50, 69, 283
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	50, 75, 183
BtsCI	GGATG	2 cut(s)	235, 311
Cac8I	GCNNGC	3 cut(s)	45, 55, 121
CciNI	GCGGCCGC	1 cut(s)	48
CfoI	GCGC	4 cut(s)	43, 121, 123, 195
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	3 cut(s)	54, 187, 226
CviJI	RGCY	9 cut(s)	5, 35, 50, 60, 75, 154, 183, 240, 336
CviKI_1	RGCY	9 cut(s)	5, 35, 50, 60, 75, 154, 183, 240, 336
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	1 cut(s)	248
DinI	GGCGCC	1 cut(s)	194
EaeI	YGGCCR	2 cut(s)	48, 181
EagI	CGGCCG	1 cut(s)	48
EclXI	CGGCCG	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	315
Eco147I	AGGCCT	1 cut(s)	75
Eco52I	CGGCCG	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	315
EgeI	GGCGCC	1 cut(s)	194
EheI	GGCGCC	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	3 cut(s)	57, 190, 229
FaiI	YATR	3 cut(s)	55, 188, 227
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	3 cut(s)	53, 186, 225
FauI	CCCGC	1 cut(s)	288
FokI	GGATG	2 cut(s)	242, 298
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	4 cut(s)	42, 120, 122, 194
HaeII	RGCGCY	2 cut(s)	44, 196
HaeIII	GGCC	3 cut(s)	50, 75, 183
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	4 cut(s)	43, 121, 123, 195
Hin1I	GRCGYC	2 cut(s)	93, 193
Hin1II	CATG	3 cut(s)	57, 190, 229
Hin6I	GCGC	4 cut(s)	41, 119, 121, 193
HinP1I	GCGC	4 cut(s)	41, 119, 121, 193
HinfI	GANTC	1 cut(s)	290
HphI	GGTGA	2 cut(s)	3, 119
Hpy188I	TCNGA	4 cut(s)	91, 151, 171, 251
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	86, 151
HpyCH4IV	ACGT	2 cut(s)	82, 215
HpyCH4V	TGCA	2 cut(s)	38, 57
HpyF10VI	GCNNNNNNNGC	6 cut(s)	44, 47, 192, 280, 305, 308
HpyF3I	CTNAG	1 cut(s)	248
HpySE526I	ACGT	2 cut(s)	82, 215
Hsp92I	GRCGYC	2 cut(s)	93, 193
Hsp92II	CATG	3 cut(s)	57, 190, 229
HspAI	GCGC	4 cut(s)	41, 119, 121, 193
KasI	GGCGCC	1 cut(s)	192
LpnPI	CCDG	2 cut(s)	57, 187
Lsp1109I	GCAGC	4 cut(s)	22, 50, 69, 283
LweI	GCATC	1 cut(s)	320
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	2 cut(s)	82, 215
MaeIII	GTNAC	1 cut(s)	9
Mly113I	GGCGCC	1 cut(s)	193
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	2 cut(s)	114, 149
MnlI	CCTC	7 cut(s)	97, 106, 110, 198, 201, 257, 258
MspA1I	CMGCKG	2 cut(s)	47, 296
Mva1269I	GAATGC	1 cut(s)	274
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	6 cut(s)	44, 47, 192, 280, 305, 308
NarI	GGCGCC	1 cut(s)	193
NlaIII	CATG	3 cut(s)	57, 190, 229
NlaIV	GGNNCC	1 cut(s)	194
NmeAIII	GCCGAG	2 cut(s)	86, 239
NmuCI	GTSAC	1 cut(s)	9
NotI	GCGGCCGC	1 cut(s)	48
NspI	RCATGY	1 cut(s)	57
PaeI	GCATGC	1 cut(s)	57
PauI	GCGCGC	1 cut(s)	119
PceI	AGGCCT	1 cut(s)	75
PctI	GAATGC	1 cut(s)	274
PflFI	GACNNNGTC	1 cut(s)	289
PleI	GAGTC	1 cut(s)	298
PluTI	GGCGCC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	298
PshAI	GACNNNNGTC	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	40
PsyI	GACNNNGTC	1 cut(s)	289
PteI	GCGCGC	1 cut(s)	119
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	299
SetI	ASST	6 cut(s)	85, 156, 218, 242, 269, 338
SfaNI	GCATC	1 cut(s)	320
SfcI	CTRYAG	1 cut(s)	36
SfoI	GGCGCC	1 cut(s)	194
SphI	GCATGC	1 cut(s)	57
SseBI	AGGCCT	1 cut(s)	75
SsiI	CCGC	9 cut(s)	47, 51, 184, 272, 281, 294, 300, 308, 327
SspDI	GGCGCC	1 cut(s)	192
SspMI	CTAG	1 cut(s)	330
StuI	AGGCCT	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	315
TaiI	ACGT	2 cut(s)	85, 218
TaqII	GACCGA	1 cut(s)	302
TauI	GCSGC	6 cut(s)	50, 53, 186, 274, 302, 311
TseFI	GTSAC	1 cut(s)	9
TseI	GCWGC	4 cut(s)	35, 38, 57, 296
Tsp45I	GTSAC	1 cut(s)	9
Tth111I	GACNNNGTC	1 cut(s)	289
XceI	RCATGY	1 cut(s)	57
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.