Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0011070

Physical Location & Seq

Genomic Coordinates Reverse (-)

1708256 .. 1712823

Gene Structure 4568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG021800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGACCTCCGGCTAGTGGAGCCAGCTGACCCGACTTCCCCTAGTGGCCTCAAGAAAAAGCTACGTTCTTCCCTTTGCATTATCCCTTGCTTCACCAACTCTAAATCCCACCACCACCACCACCACCACGGCTCCGTCACCGCCCCTACGACCCCACAAGGCTGCAGCGCCAGCCGCCGCAGCCGAGATGATTTAGGCCTCCTACCCTCCTCCGACGCCTCCCTCTCCACCCCTAAATCAGCACGCTCTCACCACCACCACCACCACAACCACCACCACGAGTTCTCCGAGCTGAAGGACAAGTGTCGGAAAGTCATTGGTCGCATGGGGCGCCACAGCGGGAGGAGGCACTCCGGGGACTTCAAGTACGACGAGTTGAGTTACGCGCTCAACTTTGATCACGAGGACTCCAACATGGATGACGACAGCTTTCCCCTCAGAAACTTCTCTGCGAGGTTGCCGCATTCCCCGCCGGCCGAGTCCGCCGCCGCTTCTCCTTCGTCCAAGGAGATAACCGCTTCTGACATTTCATCAATAGAGAGTAGAAGAGAGGTTAAACTCTGTTTCAGGAGTAATTGGTATCCTTCCAAGGTAGTTAGAATGTTGTTGTCAGAACGGTCACTATCCCAAGTACCCTTGAGTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

24.12

Weight (kDa)

9.03

Isoelectric Point (pI)

64.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11070 AT5G35090
prunus_persica	Prupe.7G255000_v2.0.a1
pyrus_communis	pycom02g01220 pycom15g14380
rosa_chinensis	RchiOBHm_Chr2g0086701
rosa_laevigata	RLG00000015783 RLG00000031868
rosa_multiflora	Rmu_sc0004626.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064680 Rroxscaffold_2G00154280
rosa_rugosa	Rorug01G0469000
rosa_samantha	Rh2AG021000 Rh2BG020900 Rh2CG021800 Rh2DG021600 Rh5BG087200 Rh5CG101100 Rh5DG087800
rosa_wichuraiana	Rw2G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	330
AccII	CGCG	1 cut(s)	386
AcoI	YGGCCR	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	314
AcyI	GRCGYC	2 cut(s)	216, 331
AfaI	GTAC	2 cut(s)	368, 633
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	364
AluBI	AGCT	4 cut(s)	26, 61, 292, 429
AluI	AGCT	4 cut(s)	26, 61, 292, 429
AoxI	GGCC	3 cut(s)	46, 196, 474
ApeKI	GCWGC	3 cut(s)	162, 165, 180
AspLEI	GCGC	3 cut(s)	170, 333, 388
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	355
AsuHPI	GGTGA	3 cut(s)	85, 130, 242
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	330
BauI	CACGAG	2 cut(s)	278, 401
BbvI	GCAGC	3 cut(s)	149, 177, 192
BceAI	ACGGC	1 cut(s)	145
BciVI	GTATCC	1 cut(s)	591
BclI	TGATCA	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	355
BfaI	CTAG	3 cut(s)	14, 42, 646
BfmI	CTRYAG	1 cut(s)	163
BfoI	RGCGCY	2 cut(s)	171, 334
BfuI	GTATCC	1 cut(s)	591
BisI	GCNGC	8 cut(s)	163, 166, 175, 178, 181, 461, 486, 489
BlsI	GCNGC	8 cut(s)	164, 167, 176, 179, 182, 462, 487, 490
Bme1390I	CCNGG	1 cut(s)	355
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	21, 133, 332
BmrFI	CCNGG	1 cut(s)	355
BoxI	GACNNNNGTC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	355
BsaHI	GRCGYC	2 cut(s)	216, 331
BsaJI	CCNNGG	4 cut(s)	127, 354, 504, 588
BsaXI	ACNNNNNCTCC	6 cut(s)	116, 146, 269, 299, 392, 422
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse118I	RCCGGY	1 cut(s)	472
BseDI	CCNNGG	4 cut(s)	127, 354, 504, 588
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	451
BseRI	GAGGAG	2 cut(s)	199, 358
BseX3I	CGGCCG	1 cut(s)	474
BseXI	GCAGC	3 cut(s)	149, 177, 192
Bsh1236I	CGCG	1 cut(s)	386
Bsh1285I	CGRYCG	1 cut(s)	477
BshFI	GGCC	3 cut(s)	48, 198, 476
BshNI	GGYRCC	1 cut(s)	330
BsiEI	CGRYCG	1 cut(s)	477
BsiSI	CCGG	3 cut(s)	10, 354, 473
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	371
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	3 cut(s)	48, 198, 476
Bsp143I	GATC	1 cut(s)	397
BspANI	GGCC	3 cut(s)	48, 198, 476
BspCNI	CTCAG	1 cut(s)	450
BspFNI	CGCG	1 cut(s)	386
BspLI	GGNNCC	3 cut(s)	21, 133, 332
BspMAI	CTGCAG	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	472
BssAI	RCCGGY	1 cut(s)	472
BssECI	CCNNGG	4 cut(s)	127, 354, 504, 588
BssMI	GATC	1 cut(s)	397
BssNI	GRCGYC	2 cut(s)	216, 331
BssSI	CACGAG	2 cut(s)	278, 401
BssT1I	CCWWGG	2 cut(s)	504, 588
Bst2BI	CACGAG	2 cut(s)	278, 401
Bst4CI	ACNGT	1 cut(s)	618
Bst6I	CTCTTC	1 cut(s)	541
BstACI	GRCGYC	2 cut(s)	216, 331
BstC8I	GCNNGC	4 cut(s)	24, 172, 244, 474
BstDEI	CTNAG	1 cut(s)	437
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	424
BstFNI	CGCG	1 cut(s)	386
BstH2I	RGCGCY	2 cut(s)	171, 334
BstHHI	GCGC	3 cut(s)	170, 333, 388
BstKTI	GATC	1 cut(s)	400
BstMBI	GATC	1 cut(s)	397
BstMCI	CGRYCG	1 cut(s)	477
BstMWI	GCNNNNNNNGC	7 cut(s)	19, 171, 174, 180, 330, 469, 482
BstPAI	GACNNNNGTC	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	353
BstSFI	CTRYAG	1 cut(s)	163
BstUI	CGCG	1 cut(s)	386
BstV1I	GCAGC	3 cut(s)	149, 177, 192
BstZI	CGGCCG	1 cut(s)	474
BsuI	GTATCC	1 cut(s)	591
BsuRI	GGCC	3 cut(s)	48, 198, 476
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	424
Cac8I	GCNNGC	4 cut(s)	24, 172, 244, 474
CfoI	GCGC	3 cut(s)	170, 333, 388
Cfr10I	RCCGGY	1 cut(s)	472
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	367, 632
CviAII	CATG	2 cut(s)	325, 415
CviQI	GTAC	2 cut(s)	367, 632
DdeI	CTNAG	1 cut(s)	437
DinI	GGCGCC	1 cut(s)	332
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
EaeI	YGGCCR	1 cut(s)	474
EagI	CGGCCG	1 cut(s)	474
Eam1104I	CTCTTC	1 cut(s)	541
EarI	CTCTTC	1 cut(s)	541
EciI	GGCGGA	1 cut(s)	472
EclXI	CGGCCG	1 cut(s)	474
Eco130I	CCWWGG	2 cut(s)	504, 588
Eco147I	AGGCCT	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	4
Eco52I	CGGCCG	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	314
EcoT14I	CCWWGG	2 cut(s)	504, 588
EgeI	GGCGCC	1 cut(s)	332
EheI	GGCGCC	1 cut(s)	332
ErhI	CCWWGG	2 cut(s)	504, 588
FaeI	CATG	2 cut(s)	328, 418
FaiI	YATR	2 cut(s)	326, 416
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	2 cut(s)	324, 414
FauI	CCCGC	2 cut(s)	332, 477
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	8 cut(s)	163, 166, 175, 178, 181, 461, 486, 489
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	8 cut(s)	163, 166, 175, 178, 181, 461, 486, 489
FspBI	CTAG	3 cut(s)	14, 42, 646
GlaI	GCGC	3 cut(s)	169, 332, 387
GluI	GCNGC	8 cut(s)	163, 166, 175, 178, 181, 461, 486, 489
HaeII	RGCGCY	2 cut(s)	171, 334
HaeIII	GGCC	3 cut(s)	48, 198, 476
HapII	CCGG	3 cut(s)	10, 354, 473
HgaI	GACGC	1 cut(s)	224
HhaI	GCGC	3 cut(s)	170, 333, 388
Hin1I	GRCGYC	2 cut(s)	216, 331
Hin1II	CATG	2 cut(s)	328, 418
Hin6I	GCGC	3 cut(s)	168, 331, 386
HinP1I	GCGC	3 cut(s)	168, 331, 386
HinfI	GANTC	2 cut(s)	407, 479
HpaII	CCGG	3 cut(s)	10, 354, 473
HphI	GGTGA	3 cut(s)	85, 130, 242
Hpy188I	TCNGA	6 cut(s)	214, 289, 309, 440, 523, 613
Hpy188III	TCNNGA	3 cut(s)	52, 401, 568
Hpy99I	CGWCG	2 cut(s)	218, 374
HpyAV	CCTTC	3 cut(s)	289, 507, 594
HpyCH4III	ACNGT	1 cut(s)	618
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	78, 165
HpyF10VI	GCNNNNNNNGC	7 cut(s)	19, 171, 174, 180, 330, 469, 482
HpyF3I	CTNAG	1 cut(s)	437
HpySE526I	ACGT	1 cut(s)	64
Hsp92I	GRCGYC	2 cut(s)	216, 331
Hsp92II	CATG	2 cut(s)	328, 418
HspAI	GCGC	3 cut(s)	168, 331, 386
KasI	GGCGCC	1 cut(s)	330
KroI	GCCGGC	1 cut(s)	472
KroNI	GCCGGC	1 cut(s)	474
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	1 cut(s)	397
LmnI	GCTCC	2 cut(s)	19, 137
LpnPI	CCDG	6 cut(s)	23, 36, 184, 367, 486, 553
Lsp1109I	GCAGC	3 cut(s)	149, 177, 192
MaeI	CTAG	3 cut(s)	14, 42, 646
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	4 cut(s)	136, 380, 618, 641
MalI	GATC	1 cut(s)	399
MboI	GATC	1 cut(s)	397
MboII	GAAGA	2 cut(s)	60, 558
MluCI	AATT	1 cut(s)	574
Mly113I	GGCGCC	1 cut(s)	331
MlyI	GAGTC	2 cut(s)	401, 488
MmeI	TCCRAC	3 cut(s)	237, 287, 435
MroNI	GCCGGC	1 cut(s)	472
MseI	TTAA	1 cut(s)	555
MspA1I	CMGCKG	2 cut(s)	26, 339
MspI	CCGG	3 cut(s)	10, 354, 473
MspR9I	CCNGG	1 cut(s)	355
Mva1269I	GAATGC	1 cut(s)	463
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	7 cut(s)	19, 171, 174, 180, 330, 469, 482
NaeI	GCCGGC	1 cut(s)	474
NarI	GGCGCC	1 cut(s)	331
NciI	CCSGG	1 cut(s)	355
NdeII	GATC	1 cut(s)	397
NgoMIV	GCCGGC	1 cut(s)	472
NlaIII	CATG	2 cut(s)	328, 418
NlaIV	GGNNCC	3 cut(s)	21, 133, 332
NmeAIII	GCCGAG	2 cut(s)	209, 502
NmuCI	GTSAC	3 cut(s)	136, 618, 641
PceI	AGGCCT	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PctI	GAATGC	1 cut(s)	463
PdiI	GCCGGC	1 cut(s)	474
PkrI	GCNGC	8 cut(s)	164, 167, 176, 179, 182, 462, 487, 490
PleI	GAGTC	2 cut(s)	401, 487
PluTI	GGCGCC	1 cut(s)	334
PpsI	GAGTC	2 cut(s)	401, 487
PshAI	GACNNNNGTC	1 cut(s)	303
PspN4I	GGNNCC	3 cut(s)	21, 133, 332
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	2 cut(s)	368, 633
RsaNI	GTAC	2 cut(s)	367, 632
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	8 cut(s)	163, 166, 175, 178, 181, 461, 486, 489
Sau3AI	GATC	1 cut(s)	397
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	401, 488
ScrFI	CCNGG	1 cut(s)	355
SetI	ASST	9 cut(s)	9, 28, 63, 67, 294, 431, 458, 555, 594
SfcI	CTRYAG	1 cut(s)	163
SfoI	GGCGCC	1 cut(s)	332
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	2 cut(s)	50, 637
SmoI	CTYRAG	2 cut(s)	50, 637
Sse9I	AATT	1 cut(s)	574
SseBI	AGGCCT	1 cut(s)	198
SspDI	GGCGCC	1 cut(s)	330
SspMI	CTAG	3 cut(s)	14, 42, 646
StuI	AGGCCT	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	353
StyI	CCWWGG	2 cut(s)	504, 588
TaaI	ACNGT	1 cut(s)	618
TaiI	ACGT	1 cut(s)	67
TasI	AATT	1 cut(s)	574
TauI	GCSGC	5 cut(s)	177, 180, 463, 488, 491
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TseFI	GTSAC	3 cut(s)	136, 618, 641
TseI	GCWGC	3 cut(s)	162, 165, 180
Tsp45I	GTSAC	3 cut(s)	136, 618, 641
TspDTI	ATGAA	1 cut(s)	519
TspGWI	ACGGA	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	3 cut(s)	14, 42, 646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.