AT5G11480

Ferrous iron transport protein B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009883
Physical Location & Seq
Reverse (-)
3669193 .. 3671684
2492 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11480.1

Sequence Viewer

Length: 957 bp
ATGATTTTAGCGCATCTTCCAAGATTCCATCTCTCAATCCTCGCGAAACCTTCTTTCTCTCTCTCTTCTTCGCATTTCAGTTTCTTAAACCCTAAGCCTTCGGTAACAGTATCTCGAACCCTTTTCTCATTCGCGTCTAAATCGAATCTCGCCACTGTTGAACCCATACCATTATCGGTCTCAGATTCAACCGATTTGGATGATGCACCTGTCGAGATTGCGCTCGACAAGCTTTTTATTCCGCCGGAGACCGATATATCCGGTGAAGACTCGGCGAGTTTAACGACGAGGATACTTAAGGGTTCGAATATTGTGCTGAGCAAGTACGCGAGGGACGCACAGGTGGTTCAGGCTGATTATGTGAAGAGTAGTGTCAAGACGGAGGATTGTCCGGCCGATGGGTTGCCGGAGTTTGCGCTTGTTGGGAGATCCAATGTTGGGAAATCATCGCTTCTCAATTCGTTGGTGAGGAGGAAACGCCTTGCCTTGACTTCTAAGAAACCTGGAAAGACGCAATGCATTAATCATTTCCGGATCAACGACAAGTGGTACTTGGTAGATTTGCCTGGTTACGGGTATGCATCAGCACCGCATGAACTCAAACAAGACTGGAACAAATTCACCAAAGACTATTTTCTAAATCGATCAACATTGGTCTCGGTGTTTTTACTAGTTGATGCCAGCATTCCTGTAAAGCCAATCGATCTCGAGTATGCAAGCTGGCTTGGTCAAAACCAGGTTCCAATGACTTTGATATTCACAAAATGCGACAAGAGAAAGAAGAAGAAAAATGGAGGGAAGAAACCGGAGGCGAACATAAAGGAGTTCCAAGACTTGATCCAAGGGTTCTTTGAGACAACACCGCCATGGATTATGACCAGCAGTGTGACGAATCAAGGTCGGGACGAGATATTGTTGCATATGGCTCAGCTAAGAAACTACTGGCTCAAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

318

Amino Acids

35.66

Weight (kDa)

9.3

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 138 - 255 1e-19 50S ribosome-binding GTPase
FeoB_N PF02421 138 - 263 8.5e-06 Ferrous iron transport protein B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 44, 134, 329
AccIII TCCGGA 1 cut(s) 531
AciI CCGC 3 cut(s) 242, 590, 863
AclWI GGATC 3 cut(s) 423, 542, 832
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 1 cut(s) 617
AfaI GTAC 2 cut(s) 326, 551
AfiI CCNNNNNNNGG 3 cut(s) 398, 438, 572
AflII CTTAAG 1 cut(s) 296
AgsI TTSAA 2 cut(s) 161, 189
AhlI ACTAGT 1 cut(s) 670
AjnI CCWGG 3 cut(s) 502, 565, 735
AluBI AGCT 3 cut(s) 232, 720, 931
AluI AGCT 3 cut(s) 232, 720, 931
Alw26I GTCTC 4 cut(s) 184, 242, 661, 848
AlwI GGATC 3 cut(s) 423, 542, 832
Ama87I CYCGRG 1 cut(s) 707
Aor13HI TCCGGA 1 cut(s) 531
AoxI GGCC 1 cut(s) 393
ApoI RAATTY 1 cut(s) 617
AseI ATTAAT 1 cut(s) 522
Asp700I GAANNNNTTC 1 cut(s) 617
AspLEI GCGC 3 cut(s) 13, 223, 418
AsuHPI GGTGA 3 cut(s) 275, 478, 613
AsuII TTCGAA 1 cut(s) 305
AvaI CYCGRG 1 cut(s) 707
BbsI GAAGAC 1 cut(s) 273
BccI CCATC 2 cut(s) 36, 392
BcgI CGANNNNNNTGC 2 cut(s) 295, 329
BciT130I CCWGG 3 cut(s) 504, 567, 737
BciVI GTATCC 1 cut(s) 285
BcoDI GTCTC 4 cut(s) 184, 242, 661, 848
BcuI ACTAGT 1 cut(s) 670
BfaI CTAG 1 cut(s) 671
BfrI CTTAAG 1 cut(s) 296
BfuI GTATCC 1 cut(s) 285
BlpI GCTNAGC 2 cut(s) 317, 927
Bme1390I CCNGG 3 cut(s) 504, 567, 737
BmeT110I CYCGRG 1 cut(s) 707
BmiI GGNNCC 1 cut(s) 741
BmrFI CCNGG 3 cut(s) 504, 567, 737
BmsI GCATC 4 cut(s) 22, 193, 590, 667
BpiI GAAGAC 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 93
Bpu1102I GCTNAGC 2 cut(s) 317, 927
Bpu14I TTCGAA 1 cut(s) 305
Bsa29I ATCGAT 2 cut(s) 643, 702
BsaI GGTCTC 3 cut(s) 184, 242, 661
BsaJI CCNNGG 2 cut(s) 841, 866
BsaWI WCCGGW 3 cut(s) 260, 531, 805
Bsc4I CCNNNNNNNGG 3 cut(s) 398, 438, 572
Bse1I ACTGG 2 cut(s) 614, 947
Bse3DI GCAATG 1 cut(s) 521
BseAI TCCGGA 1 cut(s) 531
BseBI CCWGG 3 cut(s) 504, 567, 737
BseCI ATCGAT 2 cut(s) 643, 702
BseDI CCNNGG 2 cut(s) 841, 866
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 3 cut(s) 398, 438, 572
BseMI GCAATG 1 cut(s) 521
BseMII CTCAG 3 cut(s) 195, 308, 941
BseNI ACTGG 2 cut(s) 614, 947
BseRI GAGGAG 1 cut(s) 484
BseX3I CGGCCG 1 cut(s) 393
Bsh1236I CGCG 3 cut(s) 44, 134, 329
Bsh1285I CGRYCG 1 cut(s) 396
BshFI GGCC 1 cut(s) 395
BshVI ATCGAT 2 cut(s) 643, 702
BsiEI CGRYCG 1 cut(s) 396
BsiHKCI CYCGRG 1 cut(s) 707
BsiSI CCGG 6 cut(s) 245, 261, 392, 407, 532, 806
BslFI GGGAC 2 cut(s) 347, 917
BslI CCNNNNNNNGG 3 cut(s) 398, 438, 572
BsmAI GTCTC 4 cut(s) 184, 242, 661, 848
BsmFI GGGAC 2 cut(s) 347, 917
BsmI GAATGC 1 cut(s) 684
BsnI GGCC 1 cut(s) 395
Bso31I GGTCTC 3 cut(s) 184, 242, 661
BsoBI CYCGRG 1 cut(s) 707
Bsp119I TTCGAA 1 cut(s) 305
Bsp13I TCCGGA 1 cut(s) 531
Bsp143I GATC 5 cut(s) 428, 534, 644, 703, 837
Bsp1720I GCTNAGC 2 cut(s) 317, 927
Bsp19I CCATGG 1 cut(s) 866
Bsp68I TCGCGA 1 cut(s) 44
BspACI CCGC 3 cut(s) 242, 590, 863
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 3 cut(s) 194, 309, 940
BspDI ATCGAT 2 cut(s) 643, 702
BspEI TCCGGA 1 cut(s) 531
BspFNI CGCG 3 cut(s) 44, 134, 329
BspLI GGNNCC 1 cut(s) 741
BspPI GGATC 3 cut(s) 423, 542, 832
BspT104I TTCGAA 1 cut(s) 305
BspTI CTTAAG 1 cut(s) 296
BspTNI GGTCTC 3 cut(s) 184, 242, 661
BsrDI GCAATG 1 cut(s) 521
BsrI ACTGG 2 cut(s) 614, 947
BssECI CCNNGG 2 cut(s) 841, 866
BssMI GATC 5 cut(s) 428, 534, 644, 703, 837
BssT1I CCWWGG 2 cut(s) 841, 866
Bst2UI CCWGG 3 cut(s) 504, 567, 737
Bst4CI ACNGT 2 cut(s) 109, 157
Bst6I CTCTTC 2 cut(s) 70, 359
BstAFI CTTAAG 1 cut(s) 296
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 682, 718, 722
BstDEI CTNAG 6 cut(s) 93, 181, 317, 495, 927, 932
BstDSI CCRYGG 1 cut(s) 866
BstF5I GGATG 1 cut(s) 205
BstFNI CGCG 3 cut(s) 44, 134, 329
BstHHI GCGC 3 cut(s) 13, 223, 418
BstKTI GATC 5 cut(s) 431, 537, 647, 706, 840
BstMAI GTCTC 4 cut(s) 184, 242, 661, 848
BstMBI GATC 5 cut(s) 428, 534, 644, 703, 837
BstMCI CGRYCG 1 cut(s) 396
BstMWI GCNNNNNNNGC 2 cut(s) 229, 335
BstNI CCWGG 3 cut(s) 504, 567, 737
BstSCI CCNGG 3 cut(s) 502, 565, 735
BstUI CGCG 3 cut(s) 44, 134, 329
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 428
BstYI RGATCY 1 cut(s) 428
BstZI CGGCCG 1 cut(s) 393
Bsu15I ATCGAT 2 cut(s) 643, 702
BsuI GTATCC 1 cut(s) 285
BsuRI GGCC 1 cut(s) 395
BsuTUI ATCGAT 2 cut(s) 643, 702
BtgI CCRYGG 1 cut(s) 866
BtgZI GCGATG 1 cut(s) 432
BtsCI GGATG 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 889
BtsIMutI CAGTG 3 cut(s) 153, 889, 952
BtuMI TCGCGA 1 cut(s) 44
Cac8I GCNNGC 3 cut(s) 682, 718, 722
CfoI GCGC 3 cut(s) 13, 223, 418
ClaI ATCGAT 2 cut(s) 643, 702
CseI GACGC 3 cut(s) 123, 344, 520
CsiI ACCWGGT 1 cut(s) 735
Csp6I GTAC 2 cut(s) 325, 550
CviAII CATG 2 cut(s) 593, 867
CviQI GTAC 2 cut(s) 325, 550
DdeI CTNAG 6 cut(s) 93, 181, 317, 495, 927, 932
DpnI GATC 5 cut(s) 430, 536, 646, 705, 839
DpnII GATC 5 cut(s) 428, 534, 644, 703, 837
EaeI YGGCCR 1 cut(s) 393
EagI CGGCCG 1 cut(s) 393
Eam1104I CTCTTC 2 cut(s) 70, 359
EarI CTCTTC 2 cut(s) 70, 359
EciI GGCGGA 1 cut(s) 231
EclXI CGGCCG 1 cut(s) 393
Eco130I CCWWGG 2 cut(s) 841, 866
Eco31I GGTCTC 3 cut(s) 184, 242, 661
Eco52I CGGCCG 1 cut(s) 393
Eco88I CYCGRG 1 cut(s) 707
EcoRII CCWGG 3 cut(s) 502, 565, 735
EcoT14I CCWWGG 2 cut(s) 841, 866
EcoT22I ATGCAT 2 cut(s) 521, 583
ErhI CCWWGG 2 cut(s) 841, 866
FaeI CATG 2 cut(s) 596, 870
FalI AAGNNNNNCTT 2 cut(s) 536, 568
FaqI GGGAC 2 cut(s) 347, 917
FatI CATG 2 cut(s) 592, 866
FauNDI CATATG 1 cut(s) 921
FokI GGATG 1 cut(s) 212
FspBI CTAG 1 cut(s) 671
GlaI GCGC 3 cut(s) 12, 222, 417
HaeIII GGCC 1 cut(s) 395
HapII CCGG 6 cut(s) 245, 261, 392, 407, 532, 806
HgaI GACGC 3 cut(s) 123, 344, 520
HhaI GCGC 3 cut(s) 13, 223, 418
Hin1II CATG 2 cut(s) 596, 870
Hin6I GCGC 3 cut(s) 11, 221, 416
HinP1I GCGC 3 cut(s) 11, 221, 416
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 5 cut(s) 24, 145, 185, 269, 892
HpaII CCGG 6 cut(s) 245, 261, 392, 407, 532, 806
HphI GGTGA 3 cut(s) 275, 478, 613
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 7 cut(s) 43, 114, 214, 376, 532, 707, 902
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 2 cut(s) 60, 108
HpyCH4III ACNGT 2 cut(s) 109, 157
HpyCH4V TGCA 5 cut(s) 206, 519, 581, 716, 919
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 335
HpyF3I CTNAG 6 cut(s) 93, 181, 317, 495, 927, 932
Hsp92II CATG 2 cut(s) 596, 870
HspAI GCGC 3 cut(s) 11, 221, 416
Kpn2I TCCGGA 1 cut(s) 531
Kzo9I GATC 5 cut(s) 428, 534, 644, 703, 837
LweI GCATC 4 cut(s) 22, 193, 590, 667
MabI ACCWGGT 1 cut(s) 735
MaeI CTAG 1 cut(s) 671
MaeIII GTNAC 3 cut(s) 103, 569, 886
MalI GATC 5 cut(s) 430, 536, 646, 705, 839
MboI GATC 5 cut(s) 428, 534, 644, 703, 837
MboII GAAGA 8 cut(s) 8, 57, 60, 278, 376, 793, 796, 811
MflI RGATCY 1 cut(s) 428
MluCI AATT 2 cut(s) 457, 617
MlyI GAGTC 1 cut(s) 263
MnlI CCTC 8 cut(s) 50, 282, 324, 376, 462, 465, 788, 802
Mph1103I ATGCAT 2 cut(s) 521, 583
MroI TCCGGA 1 cut(s) 531
MroXI GAANNNNTTC 1 cut(s) 617
MseI TTAA 4 cut(s) 86, 281, 297, 522
MslI CAYNNNNRTG 1 cut(s) 865
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 6 cut(s) 245, 261, 392, 407, 532, 806
MspR9I CCNGG 3 cut(s) 504, 567, 737
Mva1269I GAATGC 1 cut(s) 684
MvaI CCWGG 3 cut(s) 504, 567, 737
MvnI CGCG 3 cut(s) 44, 134, 329
MwoI GCNNNNNNNGC 2 cut(s) 229, 335
NcoI CCATGG 1 cut(s) 866
NdeI CATATG 1 cut(s) 921
NdeII GATC 5 cut(s) 428, 534, 644, 703, 837
NlaIII CATG 2 cut(s) 596, 870
NlaIV GGNNCC 1 cut(s) 741
NmeAIII GCCGAG 1 cut(s) 251
NmuCI GTSAC 1 cut(s) 886
NruI TCGCGA 1 cut(s) 44
NsiI ATGCAT 2 cut(s) 521, 583
NspV TTCGAA 1 cut(s) 305
PaeR7I CTCGAG 1 cut(s) 707
PctI GAATGC 1 cut(s) 684
PdmI GAANNNNTTC 1 cut(s) 617
PfeI GAWTC 4 cut(s) 24, 145, 185, 892
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
PshBI ATTAAT 1 cut(s) 522
Psp6I CCWGG 3 cut(s) 502, 565, 735
PspGI CCWGG 3 cut(s) 502, 565, 735
PspN4I GGNNCC 1 cut(s) 741
PsuI RGATCY 1 cut(s) 428
RruI TCGCGA 1 cut(s) 44
RsaI GTAC 2 cut(s) 326, 551
RsaNI GTAC 2 cut(s) 325, 550
RseI CAYNNNNRTG 1 cut(s) 865
SaqAI TTAA 4 cut(s) 86, 281, 297, 522
Sau3AI GATC 5 cut(s) 428, 534, 644, 703, 837
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 3 cut(s) 504, 567, 737
SetI ASST 9 cut(s) 52, 211, 234, 345, 505, 722, 741, 901, 933
SexAI ACCWGGT 1 cut(s) 735
SfaNI GCATC 4 cut(s) 22, 193, 590, 667
Sfr274I CTCGAG 1 cut(s) 707
SfuI TTCGAA 1 cut(s) 305
SlaI CTCGAG 1 cut(s) 707
SmiMI CAYNNNNRTG 1 cut(s) 865
SmlI CTYRAG 2 cut(s) 296, 707
SmoI CTYRAG 2 cut(s) 296, 707
SpeI ACTAGT 1 cut(s) 670
Sse9I AATT 2 cut(s) 457, 617
SsiI CCGC 3 cut(s) 242, 590, 863
SspI AATATT 1 cut(s) 310
SspMI CTAG 1 cut(s) 671
StyD4I CCNGG 3 cut(s) 502, 565, 735
StyI CCWWGG 2 cut(s) 841, 866
TaaI ACNGT 2 cut(s) 109, 157
TaqI TCGA 8 cut(s) 115, 143, 213, 225, 305, 643, 702, 708
TaqII GACCGA 2 cut(s) 166, 266
TasI AATT 2 cut(s) 457, 617
TfiI GAWTC 4 cut(s) 24, 145, 185, 892
Tru1I TTAA 4 cut(s) 86, 281, 297, 522
Tru9I TTAA 4 cut(s) 86, 281, 297, 522
TscAI CASTG 2 cut(s) 160, 889
TseFI GTSAC 1 cut(s) 886
Tsp45I GTSAC 1 cut(s) 886
TspDTI ATGAA 1 cut(s) 609
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 2 cut(s) 160, 889
Vha464I CTTAAG 1 cut(s) 296
VspI ATTAAT 1 cut(s) 522
XapI RAATTY 1 cut(s) 617
XhoI CTCGAG 1 cut(s) 707
XmnI GAANNNNTTC 1 cut(s) 617
XspI CTAG 1 cut(s) 671
Zsp2I ATGCAT 2 cut(s) 521, 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.