Rh6CG468600

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0009883
Physical Location & Seq
Reverse (-)
64032835 .. 64035165
2331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG468600.1

Sequence Viewer

Length: 966 bp
ATGGTTCTGCTTCATCTTCCACGAAGCCACATCTCCCTCATCACCCACTTCACTCACTTCTCAAAACCCAAACCCCCCACAAACCTAAACCCCATCTTCACCTCCACCCTCTTCTCCTCCCCCAAATCCACTCTCTCAGTCTCGGAGCCCATCCCCATCCCCATCTCGCCTCTCCCAGAATCCCACATCGAACCAACCCTAGAAGAGTTCCATACCCAACTCGAAATCCCGCTCGAGAAGCTCTTCGTGCCGCCGGAGACCGAGCTCAAGTACACCGAATCCGGTGCCCTGAGCACGAGAATCTTGAAGGGGTCGAATATTTTGCTGAGCAAGTATGCTAGGGATGCTCAGGTGACTCAAGCCGAGTTTGTGAAGAGTAGTGTGAGGACTGAGGATTGCCCGGCCAATGGTCTGCCGGAGTTTGCTCTCGTCGGACGGTCAAATGTCGGCAAGTCGTCGCTGCTTAACTCGCTTGTGCGTCGGAAGAAGCTAGCTTTGACGTCCAAGAAGCCTGGGAAAACACAATGCATCAATCATTTTCGGATCAATGATAGCTGGTATTTGGTGGATTTGCCCGGCTACGGGTATGCAGCTGCACCGCAGGAACTTAGAACTGATTGGGTGAAGTTTACTAAAGACTACTTCCTGAATAGGTCAACATTAGTTTCAGTTTTCCTTCTCATCGATGCCAGTATTCCTGCCAAAAAGATTGATCTGGAGTATGCTAGTTGGCTGGGCCAGAATCAGATCCCCATGACATTAATATTCACCAAATGTGACAAGCGGAAGAAGAAAAGACATGGAGGAAAAAGAGCAGAAGAAAATGTGAACGATTTTCAGGAGTTAATTCGTGGCTTCTTCCAGACAACACCACCATGGATTATGACCAGCAGCTTTACCAATCAGGGTCGTGATGAGATGTTATTGCATATGGCTCAGCTGCGGAATTATTGGCTTAAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

321

Amino Acids

36.56

Weight (kDa)

9.48

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 141 - 258 9.6e-19 50S ribosome-binding GTPase
FeoB_N PF02421 141 - 266 6.7e-06 Ferrous iron transport protein B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 503
AccB1I GGYRCC 1 cut(s) 284
AccBSI CCGCTC 1 cut(s) 232
AciI CCGC 5 cut(s) 230, 251, 599, 784, 943
AclWI GGATC 2 cut(s) 551, 742
AcoI YGGCCR 1 cut(s) 402
AcyI GRCGYC 1 cut(s) 500
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 3 cut(s) 407, 581, 582
AflII CTTAAG 1 cut(s) 956
AgsI TTSAA 1 cut(s) 307
AjnI CCWGG 1 cut(s) 511
AluBI AGCT 8 cut(s) 241, 265, 490, 494, 555, 593, 894, 940
AluI AGCT 8 cut(s) 241, 265, 490, 494, 555, 593, 894, 940
Alw21I GWGCWC 2 cut(s) 267, 296
Alw26I GTCTC 2 cut(s) 145, 251
AlwI GGATC 2 cut(s) 551, 742
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 2 cut(s) 402, 736
ApeKI GCWGC 5 cut(s) 460, 590, 593, 891, 940
AseI ATTAAT 1 cut(s) 761
Asp700I GAANNNNTTC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 736
AsuC2I CCSGG 2 cut(s) 401, 576
AsuHPI GGTGA 5 cut(s) 34, 91, 364, 634, 760
AsuNHI GCTAGC 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 289
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 2 cut(s) 150, 267
BauI CACGAG 1 cut(s) 295
Bbv12I GWGCWC 2 cut(s) 267, 296
BbvI GCAGC 5 cut(s) 447, 580, 602, 903, 927
BccI CCATC 4 cut(s) 101, 158, 164, 170
BcgI CGANNNNNNTGC 4 cut(s) 266, 300, 304, 338
BciT130I CCWGG 1 cut(s) 513
BcnI CCSGG 2 cut(s) 401, 576
BcoDI GTCTC 2 cut(s) 145, 251
BfaI CTAG 5 cut(s) 200, 339, 491, 726, 964
BfrI CTTAAG 1 cut(s) 956
BisI GCNGC 6 cut(s) 251, 461, 591, 594, 892, 941
BlpI GCTNAGC 2 cut(s) 326, 936
BlsI GCNGC 6 cut(s) 252, 462, 592, 595, 893, 942
Bme1390I CCNGG 3 cut(s) 401, 513, 576
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 736
BmiI GGNNCC 2 cut(s) 147, 286
BmrFI CCNGG 3 cut(s) 401, 513, 576
BmsI GCATC 3 cut(s) 334, 537, 676
BmtI GCTAGC 1 cut(s) 494
BpmI CTGGAG 1 cut(s) 737
Bpu10I CCTNAGC 2 cut(s) 290, 348
Bpu1102I GCTNAGC 2 cut(s) 326, 936
BpuEI CTTGAG 2 cut(s) 251, 342
BpuMI CCSGG 2 cut(s) 401, 576
Bsa29I ATCGAT 1 cut(s) 684
BsaHI GRCGYC 1 cut(s) 500
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 2 cut(s) 512, 875
BsaWI WCCGGW 1 cut(s) 281
Bsc4I CCNNNNNNNGG 3 cut(s) 407, 581, 582
Bse1I ACTGG 1 cut(s) 690
BseBI CCWGG 1 cut(s) 513
BseCI ATCGAT 1 cut(s) 684
BseDI CCNNGG 2 cut(s) 512, 875
BseGI GGATG 3 cut(s) 150, 156, 349
BseLI CCNNNNNNNGG 3 cut(s) 407, 581, 582
BseMII CTCAG 6 cut(s) 150, 281, 317, 362, 381, 950
BseNI ACTGG 1 cut(s) 690
BseRI GAGGAG 1 cut(s) 106
BseSI GKGCMC 1 cut(s) 289
BseXI GCAGC 5 cut(s) 447, 580, 602, 903, 927
BseYI CCCAGC 1 cut(s) 733
BsgI GTGCAG 1 cut(s) 579
BshFI GGCC 2 cut(s) 404, 738
BshNI GGYRCC 1 cut(s) 284
BshVI ATCGAT 1 cut(s) 684
BsiHKAI GWGCWC 2 cut(s) 267, 296
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 5 cut(s) 254, 282, 401, 416, 576
BslI CCNNNNNNNGG 3 cut(s) 407, 581, 582
BsmAI GTCTC 2 cut(s) 145, 251
BsnI GGCC 2 cut(s) 404, 738
Bso31I GGTCTC 1 cut(s) 251
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 4 cut(s) 150, 267, 289, 296
Bsp143I GATC 3 cut(s) 543, 712, 747
Bsp1720I GCTNAGC 2 cut(s) 326, 936
Bsp19I CCATGG 1 cut(s) 875
BspACI CCGC 5 cut(s) 230, 251, 599, 784, 943
BspANI GGCC 2 cut(s) 404, 738
BspCNI CTCAG 6 cut(s) 149, 282, 318, 361, 382, 949
BspDI ATCGAT 1 cut(s) 684
BspLI GGNNCC 2 cut(s) 147, 286
BspOI GCTAGC 1 cut(s) 494
BspPI GGATC 2 cut(s) 551, 742
BspQI GCTCTTC 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 284
BspTI CTTAAG 1 cut(s) 956
BspTNI GGTCTC 1 cut(s) 251
BsrBI CCGCTC 1 cut(s) 232
BsrI ACTGG 1 cut(s) 690
BssECI CCNNGG 2 cut(s) 512, 875
BssMI GATC 3 cut(s) 543, 712, 747
BssNI GRCGYC 1 cut(s) 500
BssSI CACGAG 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 875
Bst2BI CACGAG 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 513
Bst4CI ACNGT 1 cut(s) 438
Bst6I CTCTTC 4 cut(s) 116, 198, 248, 368
BstACI GRCGYC 1 cut(s) 500
BstAFI CTTAAG 1 cut(s) 956
BstC8I GCNNGC 1 cut(s) 492
BstDEI CTNAG 7 cut(s) 136, 290, 326, 348, 390, 608, 936
BstDSI CCRYGG 1 cut(s) 875
BstF5I GGATG 3 cut(s) 150, 156, 349
BstKTI GATC 3 cut(s) 546, 715, 750
BstMAI GTCTC 2 cut(s) 145, 251
BstMBI GATC 3 cut(s) 543, 712, 747
BstMWI GCNNNNNNNGC 4 cut(s) 238, 247, 344, 469
BstNI CCWGG 1 cut(s) 513
BstSCI CCNGG 3 cut(s) 399, 511, 574
BstSLI GKGCMC 1 cut(s) 289
BstV1I GCAGC 5 cut(s) 447, 580, 602, 903, 927
BstX2I RGATCY 1 cut(s) 747
BstYI RGATCY 1 cut(s) 747
Bsu15I ATCGAT 1 cut(s) 684
BsuRI GGCC 2 cut(s) 404, 738
BsuTUI ATCGAT 1 cut(s) 684
BtgI CCRYGG 1 cut(s) 875
BtsCI GGATG 3 cut(s) 150, 156, 349
Cac8I GCNNGC 1 cut(s) 492
Cfr13I GGNCC 1 cut(s) 736
ClaI ATCGAT 1 cut(s) 684
CseI GACGC 1 cut(s) 467
Csp6I GTAC 1 cut(s) 271
CviAII CATG 3 cut(s) 754, 800, 876
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 7 cut(s) 136, 290, 326, 348, 390, 608, 936
DpnI GATC 3 cut(s) 545, 714, 749
DpnII GATC 3 cut(s) 543, 712, 747
EaeI YGGCCR 1 cut(s) 402
Eam1104I CTCTTC 4 cut(s) 116, 198, 248, 368
EarI CTCTTC 4 cut(s) 116, 198, 248, 368
Ecl136II GAGCTC 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 875
Eco24I GRGCYC 2 cut(s) 150, 267
Eco31I GGTCTC 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 265
Eco88I CYCGRG 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 511
EcoT14I CCWWGG 1 cut(s) 875
EcoT22I ATGCAT 1 cut(s) 530
EcoT38I GRGCYC 2 cut(s) 150, 267
ErhI CCWWGG 1 cut(s) 875
FaeI CATG 3 cut(s) 757, 803, 879
FatI CATG 3 cut(s) 753, 799, 875
FauI CCCGC 1 cut(s) 237
FauNDI CATATG 1 cut(s) 930
Fnu4HI GCNGC 6 cut(s) 251, 461, 591, 594, 892, 941
FokI GGATG 3 cut(s) 137, 143, 356
FriOI GRGCYC 2 cut(s) 150, 267
Fsp4HI GCNGC 6 cut(s) 251, 461, 591, 594, 892, 941
FspBI CTAG 5 cut(s) 200, 339, 491, 726, 964
GluI GCNGC 6 cut(s) 251, 461, 591, 594, 892, 941
GsaI CCCAGC 1 cut(s) 737
GsuI CTGGAG 1 cut(s) 737
HaeIII GGCC 2 cut(s) 404, 738
HapII CCGG 5 cut(s) 254, 282, 401, 416, 576
HgaI GACGC 1 cut(s) 467
Hin1I GRCGYC 1 cut(s) 500
Hin1II CATG 3 cut(s) 757, 803, 879
HincII GTYRAC 1 cut(s) 657
HindII GTYRAC 1 cut(s) 657
HinfI GANTC 5 cut(s) 179, 278, 300, 355, 742
HpaII CCGG 5 cut(s) 254, 282, 401, 416, 576
HphI GGTGA 5 cut(s) 34, 91, 364, 634, 760
Hpy166II GTNNAC 4 cut(s) 273, 630, 657, 829
Hpy188I TCNGA 5 cut(s) 145, 434, 483, 543, 747
Hpy188III TCNNGA 7 cut(s) 235, 304, 646, 716, 839, 862, 911
Hpy8I GTNNAC 4 cut(s) 273, 630, 657, 829
Hpy99I CGWCG 3 cut(s) 434, 460, 483
HpyAV CCTTC 2 cut(s) 301, 686
HpyCH4III ACNGT 1 cut(s) 438
HpyCH4IV ACGT 1 cut(s) 500
HpyCH4V TGCA 4 cut(s) 528, 590, 596, 928
HpyF10VI GCNNNNNNNGC 4 cut(s) 238, 247, 344, 469
HpyF3I CTNAG 7 cut(s) 136, 290, 326, 348, 390, 608, 936
HpySE526I ACGT 1 cut(s) 500
Hsp92I GRCGYC 1 cut(s) 500
Hsp92II CATG 3 cut(s) 757, 803, 879
Kzo9I GATC 3 cut(s) 543, 712, 747
LguI GCTCTTC 1 cut(s) 248
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 5 cut(s) 447, 580, 602, 903, 927
LweI GCATC 3 cut(s) 334, 537, 676
MaeI CTAG 5 cut(s) 200, 339, 491, 726, 964
MaeII ACGT 1 cut(s) 500
MaeIII GTNAC 2 cut(s) 352, 776
MalI GATC 3 cut(s) 545, 714, 749
MbiI CCGCTC 1 cut(s) 232
MboI GATC 3 cut(s) 543, 712, 747
MflI RGATCY 1 cut(s) 747
MhlI GDGCHC 4 cut(s) 150, 267, 289, 296
MluCI AATT 2 cut(s) 846, 946
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 2 cut(s) 412, 461
MnlI CCTC 8 cut(s) 47, 112, 119, 127, 180, 378, 385, 797
Mph1103I ATGCAT 1 cut(s) 530
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 4 cut(s) 465, 761, 845, 957
MslI CAYNNNNRTG 1 cut(s) 874
MspA1I CMGCKG 2 cut(s) 593, 940
MspCI CTTAAG 1 cut(s) 956
MspI CCGG 5 cut(s) 254, 282, 401, 416, 576
MspR9I CCNGG 3 cut(s) 401, 513, 576
MvaI CCWGG 1 cut(s) 513
MwoI GCNNNNNNNGC 4 cut(s) 238, 247, 344, 469
NciI CCSGG 2 cut(s) 401, 576
NcoI CCATGG 1 cut(s) 875
NdeI CATATG 1 cut(s) 930
NdeII GATC 3 cut(s) 543, 712, 747
NheI GCTAGC 1 cut(s) 490
NlaIII CATG 3 cut(s) 757, 803, 879
NlaIV GGNNCC 2 cut(s) 147, 286
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 2 cut(s) 352, 776
NsiI ATGCAT 1 cut(s) 530
PaeR7I CTCGAG 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 4 cut(s) 179, 278, 300, 742
PkrI GCNGC 6 cut(s) 252, 462, 592, 595, 893, 942
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PshBI ATTAAT 1 cut(s) 761
Psp124BI GAGCTC 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 511
PspFI CCCAGC 1 cut(s) 733
PspGI CCWGG 1 cut(s) 511
PspN4I GGNNCC 2 cut(s) 147, 286
PspPI GGNCC 1 cut(s) 736
PsuI RGATCY 1 cut(s) 747
PvuII CAGCTG 2 cut(s) 593, 940
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
RseI CAYNNNNRTG 1 cut(s) 874
SacI GAGCTC 1 cut(s) 267
SapI GCTCTTC 1 cut(s) 248
SaqAI TTAA 4 cut(s) 465, 761, 845, 957
SatI GCNGC 6 cut(s) 251, 461, 591, 594, 892, 941
Sau3AI GATC 3 cut(s) 543, 712, 747
Sau96I GGNCC 1 cut(s) 736
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 3 cut(s) 401, 513, 576
SduI GDGCHC 4 cut(s) 150, 267, 289, 296
SfaNI GCATC 3 cut(s) 334, 537, 676
Sfr274I CTCGAG 1 cut(s) 233
SlaI CTCGAG 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 874
SmlI CTYRAG 4 cut(s) 233, 266, 357, 956
SmoI CTYRAG 4 cut(s) 233, 266, 357, 956
Sse9I AATT 2 cut(s) 846, 946
SsiI CCGC 5 cut(s) 230, 251, 599, 784, 943
SspI AATATT 2 cut(s) 319, 765
SspMI CTAG 5 cut(s) 200, 339, 491, 726, 964
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 3 cut(s) 399, 511, 574
StyI CCWWGG 1 cut(s) 875
TaaI ACNGT 1 cut(s) 438
TaiI ACGT 1 cut(s) 503
TaqI TCGA 5 cut(s) 189, 222, 234, 314, 684
TaqII GACCGA 1 cut(s) 275
TasI AATT 2 cut(s) 846, 946
TatI WGTACW 1 cut(s) 270
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 4 cut(s) 179, 278, 300, 742
Tru1I TTAA 4 cut(s) 465, 761, 845, 957
Tru9I TTAA 4 cut(s) 465, 761, 845, 957
TseFI GTSAC 2 cut(s) 352, 776
TseI GCWGC 5 cut(s) 460, 590, 593, 891, 940
Tsp45I GTSAC 2 cut(s) 352, 776
Vha464I CTTAAG 1 cut(s) 956
VspI ATTAAT 1 cut(s) 761
XhoI CTCGAG 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 5 cut(s) 200, 339, 491, 726, 964
ZraI GACGTC 1 cut(s) 501
Zsp2I ATGCAT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.