Rorug06G0343100

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009883
Physical Location & Seq
Reverse (-)
49390396 .. 49391411
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0343100.1

Sequence Viewer

Length: 309 bp
ATGGAGAGTGTTAGAGAATTGGCTTCAGAGAAGGCAGCAGTGATCTTCACCAAGAGCTCATGCTGCATATGCCACAGTGTCAAGTCGCTTTTCTACGAGCTCGGTGCAAGCCCTGCTATTCACGAGATTGATCGATACTCAAATGGGAGGGACATGGAGTCAGCGTTAAGGCAGCTCGGGTGCAACCCTTCTTTCCCTGCTGTGTTCATAGGTGGGAAGTATGTAGGCTCTTCAAAGGATATCATATCCCTCCATGTTGATGGGTCTCTAAAGCAAATGCTCAAAGATGCAAGAGCCATCTGGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

102

Amino Acids

11.22

Weight (kDa)

7.69

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 14 - 75 8e-13 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 9
AgsI TTSAA 1 cut(s) 234
AhdI GACNNNNNGTC 1 cut(s) 157
AluBI AGCT 3 cut(s) 57, 100, 175
AluI AGCT 3 cut(s) 57, 100, 175
Alw21I GWGCWC 2 cut(s) 59, 102
Alw26I GTCTC 1 cut(s) 270
Ama87I CYCGRG 1 cut(s) 176
ApeKI GCWGC 3 cut(s) 35, 63, 172
AsuHPI GGTGA 1 cut(s) 40
AvaI CYCGRG 1 cut(s) 176
BanII GRGCYC 2 cut(s) 59, 102
BauI CACGAG 1 cut(s) 122
Bbv12I GWGCWC 2 cut(s) 59, 102
BbvI GCAGC 3 cut(s) 47, 50, 184
BccI CCATC 2 cut(s) 254, 305
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 1 cut(s) 307
BisI GCNGC 3 cut(s) 36, 64, 173
BlsI GCNGC 3 cut(s) 37, 65, 174
BmeRI GACNNNNNGTC 1 cut(s) 157
BmeT110I CYCGRG 1 cut(s) 176
BmsI GCATC 1 cut(s) 277
Bsa29I ATCGAT 1 cut(s) 133
BsaI GGTCTC 1 cut(s) 270
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
BseCI ATCGAT 1 cut(s) 133
BseXI GCAGC 3 cut(s) 47, 50, 184
BshVI ATCGAT 1 cut(s) 133
BsiHKAI GWGCWC 2 cut(s) 59, 102
BsiHKCI CYCGRG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 270
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 59, 102
Bsp143I GATC 2 cut(s) 42, 130
BspDI ATCGAT 1 cut(s) 133
BspQI GCTCTTC 1 cut(s) 235
BspTNI GGTCTC 1 cut(s) 270
BssMI GATC 2 cut(s) 42, 130
BssSI CACGAG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 235
BstAPI GCANNNNNTGC 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 109
BstKTI GATC 2 cut(s) 45, 133
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 2 cut(s) 42, 130
BstMWI GCNNNNNNNGC 3 cut(s) 63, 69, 113
BstV1I GCAGC 3 cut(s) 47, 50, 184
BstXI CCANNNNNNTGG 1 cut(s) 260
Bsu15I ATCGAT 1 cut(s) 133
BsuTUI ATCGAT 1 cut(s) 133
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 45, 82
Cac8I GCNNGC 1 cut(s) 109
ClaI ATCGAT 1 cut(s) 133
CviAII CATG 3 cut(s) 60, 154, 254
CviJI RGCY 7 cut(s) 23, 57, 100, 111, 175, 228, 296
CviKI_1 RGCY 7 cut(s) 23, 57, 100, 111, 175, 228, 296
DpnI GATC 2 cut(s) 44, 132
DpnII GATC 2 cut(s) 42, 130
DriI GACNNNNNGTC 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 235
Eam1105I GACNNNNNGTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 235
Ecl136II GAGCTC 2 cut(s) 57, 100
Eco24I GRGCYC 2 cut(s) 59, 102
Eco31I GGTCTC 1 cut(s) 270
Eco32I GATATC 1 cut(s) 241
Eco53kI GAGCTC 2 cut(s) 57, 100
Eco57I CTGAAG 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 2 cut(s) 57, 100
EcoRV GATATC 1 cut(s) 241
EcoT38I GRGCYC 2 cut(s) 59, 102
FaeI CATG 3 cut(s) 63, 157, 257
FaiI YATR 8 cut(s) 61, 68, 70, 155, 209, 222, 245, 255
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 59, 153, 253
FauNDI CATATG 1 cut(s) 68
Fnu4HI GCNGC 3 cut(s) 36, 64, 173
FriOI GRGCYC 2 cut(s) 59, 102
Fsp4HI GCNGC 3 cut(s) 36, 64, 173
FspBI CTAG 1 cut(s) 307
GluI GCNGC 3 cut(s) 36, 64, 173
Hin1II CATG 3 cut(s) 63, 157, 257
HinfI GANTC 1 cut(s) 158
HphI GGTGA 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 25, 198
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4V TGCA 4 cut(s) 66, 107, 183, 290
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 69, 113
Hsp92II CATG 3 cut(s) 63, 157, 257
Kzo9I GATC 2 cut(s) 42, 130
LguI GCTCTTC 1 cut(s) 235
LpnPI CCDG 3 cut(s) 126, 210, 286
Lsp1109I GCAGC 3 cut(s) 47, 50, 184
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 307
MalI GATC 2 cut(s) 44, 132
MboI GATC 2 cut(s) 42, 130
MboII GAAGA 2 cut(s) 37, 222
MhlI GDGCHC 2 cut(s) 59, 102
MluCI AATT 1 cut(s) 17
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 2 cut(s) 141, 260
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 258
MwoI GCNNNNNNNGC 3 cut(s) 63, 69, 113
NdeI CATATG 1 cut(s) 68
NdeII GATC 2 cut(s) 42, 130
NlaIII CATG 3 cut(s) 63, 157, 257
PciSI GCTCTTC 1 cut(s) 235
PkrI GCNGC 3 cut(s) 37, 65, 174
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp124BI GAGCTC 2 cut(s) 59, 102
RseI CAYNNNNRTG 1 cut(s) 258
SacI GAGCTC 2 cut(s) 59, 102
SapI GCTCTTC 1 cut(s) 235
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 3 cut(s) 36, 64, 173
Sau3AI GATC 2 cut(s) 42, 130
SchI GAGTC 1 cut(s) 167
SduI GDGCHC 2 cut(s) 59, 102
SetI ASST 4 cut(s) 59, 102, 177, 214
SfaNI GCATC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 258
Sse9I AATT 1 cut(s) 17
SspMI CTAG 1 cut(s) 307
SstI GAGCTC 2 cut(s) 59, 102
TaaI ACNGT 1 cut(s) 77
TaqI TCGA 1 cut(s) 133
TasI AATT 1 cut(s) 17
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 2 cut(s) 45, 82
TseI GCWGC 3 cut(s) 35, 63, 172
TspDTI ATGAA 1 cut(s) 196
TspRI CASTG 2 cut(s) 45, 82
XspI CTAG 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.