Rh6DG455200

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0009883
Physical Location & Seq
Reverse (-)
62665318 .. 62668152
2835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG455200.1

Sequence Viewer

Length: 753 bp
ATGGTTCTGCTTCATCTTCCACGAAGCCACATCTCCCTCTTCACCCACTTCACTCACTTCTCAAAACCCAAACCCCCCACAAACCTAAACCCCATCTTCACCTCCACCCTCTTCTCCTCCCCCAAATCCACTCTCTCAGTCTCGGAGCCCATCCCCATCCCCATCTCGCCTCTCCCAGAATCCCACATCGAACCAACCCTAGAAGAGTTCCATACCCAACTCGAAATCCCGCTCGAGAAGCTCTTCGTGCCGCCGGAGACCGAGCTCAAGTACACCGAATCCGGTGCCCTGAGCACGAGAATCTTGAAGGGGTCGAATATTTTGCTGAGCAAGTATGCTAGGGATGCTCAGGTGACTCAAGCCGAGTTTGTGAAGAGTAGTGTGAGGACTGAGGATTGCCCGGCCAATGGTCTGCCGGAGTTCGCTCTCGTCGGACGGTCAAATGTCGGCAAGTCGTCGCTGCTTAACTCGCTTGTGCGTCGGAAGAAGCTAGCTTTGACGTCCAAGAAGCCTGGGAAAACACAATGCATCAATCATTTTCGGATCAATGATAGCTGGTATTTGGTGGATTTGCCCGGCTACGGGTATGCAGCTGCACCGCAGGAACTTAGAACTGATTGGGTGAAGTTTACTAAAGACTACTTCCTGAATAGGTCAACATTAGTTTCAGTTTTCCTTCTCATCGATGCCAGTATTCCTGCCAAAAAGATTGATCTGGAGTATGCTAGTTGGCTGGGCCAGAATCAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

250

Amino Acids

28.05

Weight (kDa)

9.11

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 141 - 245 9.8e-17 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 503
AccB1I GGYRCC 1 cut(s) 284
AccBSI CCGCTC 1 cut(s) 232
AciI CCGC 3 cut(s) 230, 251, 599
AclWI GGATC 1 cut(s) 551
AcoI YGGCCR 1 cut(s) 402
AcyI GRCGYC 1 cut(s) 500
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 4 cut(s) 407, 581, 582, 745
AgsI TTSAA 1 cut(s) 307
AjnI CCWGG 1 cut(s) 511
AluBI AGCT 6 cut(s) 241, 265, 490, 494, 555, 593
AluI AGCT 6 cut(s) 241, 265, 490, 494, 555, 593
Alw21I GWGCWC 2 cut(s) 267, 296
Alw26I GTCTC 2 cut(s) 145, 251
AlwI GGATC 1 cut(s) 551
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 2 cut(s) 402, 736
ApeKI GCWGC 3 cut(s) 460, 590, 593
Asp700I GAANNNNTTC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 736
AsuC2I CCSGG 2 cut(s) 401, 576
AsuHPI GGTGA 4 cut(s) 34, 91, 364, 634
AsuNHI GCTAGC 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 289
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 2 cut(s) 150, 267
BauI CACGAG 1 cut(s) 295
Bbv12I GWGCWC 2 cut(s) 267, 296
BbvI GCAGC 3 cut(s) 447, 580, 602
BccI CCATC 4 cut(s) 101, 158, 164, 170
BcgI CGANNNNNNTGC 4 cut(s) 266, 300, 304, 338
BciT130I CCWGG 1 cut(s) 513
BcnI CCSGG 2 cut(s) 401, 576
BcoDI GTCTC 2 cut(s) 145, 251
BfaI CTAG 4 cut(s) 200, 339, 491, 726
BisI GCNGC 4 cut(s) 251, 461, 591, 594
BlpI GCTNAGC 1 cut(s) 326
BlsI GCNGC 4 cut(s) 252, 462, 592, 595
Bme1390I CCNGG 3 cut(s) 401, 513, 576
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 736
BmiI GGNNCC 2 cut(s) 147, 286
BmrFI CCNGG 3 cut(s) 401, 513, 576
BmsI GCATC 3 cut(s) 334, 537, 676
BmtI GCTAGC 1 cut(s) 494
BpmI CTGGAG 1 cut(s) 737
Bpu10I CCTNAGC 2 cut(s) 290, 348
Bpu1102I GCTNAGC 1 cut(s) 326
BpuEI CTTGAG 2 cut(s) 251, 342
BpuMI CCSGG 2 cut(s) 401, 576
Bsa29I ATCGAT 1 cut(s) 684
BsaHI GRCGYC 1 cut(s) 500
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 512
BsaWI WCCGGW 1 cut(s) 281
Bsc4I CCNNNNNNNGG 4 cut(s) 407, 581, 582, 745
Bse1I ACTGG 1 cut(s) 690
BseBI CCWGG 1 cut(s) 513
BseCI ATCGAT 1 cut(s) 684
BseDI CCNNGG 1 cut(s) 512
BseGI GGATG 3 cut(s) 150, 156, 349
BseLI CCNNNNNNNGG 4 cut(s) 407, 581, 582, 745
BseMII CTCAG 5 cut(s) 150, 281, 317, 362, 381
BseNI ACTGG 1 cut(s) 690
BseRI GAGGAG 1 cut(s) 106
BseSI GKGCMC 1 cut(s) 289
BseXI GCAGC 3 cut(s) 447, 580, 602
BseYI CCCAGC 1 cut(s) 733
BsgI GTGCAG 1 cut(s) 579
BshFI GGCC 2 cut(s) 404, 738
BshNI GGYRCC 1 cut(s) 284
BshVI ATCGAT 1 cut(s) 684
BsiHKAI GWGCWC 2 cut(s) 267, 296
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 5 cut(s) 254, 282, 401, 416, 576
BslI CCNNNNNNNGG 4 cut(s) 407, 581, 582, 745
BsmAI GTCTC 2 cut(s) 145, 251
BsnI GGCC 2 cut(s) 404, 738
Bso31I GGTCTC 1 cut(s) 251
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 4 cut(s) 150, 267, 289, 296
Bsp143I GATC 2 cut(s) 543, 712
Bsp1720I GCTNAGC 1 cut(s) 326
BspACI CCGC 3 cut(s) 230, 251, 599
BspANI GGCC 2 cut(s) 404, 738
BspCNI CTCAG 5 cut(s) 149, 282, 318, 361, 382
BspDI ATCGAT 1 cut(s) 684
BspLI GGNNCC 2 cut(s) 147, 286
BspOI GCTAGC 1 cut(s) 494
BspPI GGATC 1 cut(s) 551
BspQI GCTCTTC 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 251
BsrBI CCGCTC 1 cut(s) 232
BsrI ACTGG 1 cut(s) 690
BssECI CCNNGG 1 cut(s) 512
BssMI GATC 2 cut(s) 543, 712
BssNI GRCGYC 1 cut(s) 500
BssSI CACGAG 1 cut(s) 295
Bst2BI CACGAG 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 513
Bst4CI ACNGT 1 cut(s) 438
Bst6I CTCTTC 5 cut(s) 44, 116, 198, 248, 368
BstACI GRCGYC 1 cut(s) 500
BstC8I GCNNGC 1 cut(s) 492
BstDEI CTNAG 6 cut(s) 136, 290, 326, 348, 390, 608
BstF5I GGATG 3 cut(s) 150, 156, 349
BstKTI GATC 2 cut(s) 546, 715
BstMAI GTCTC 2 cut(s) 145, 251
BstMBI GATC 2 cut(s) 543, 712
BstMWI GCNNNNNNNGC 4 cut(s) 238, 247, 344, 469
BstNI CCWGG 1 cut(s) 513
BstSCI CCNGG 3 cut(s) 399, 511, 574
BstSLI GKGCMC 1 cut(s) 289
BstV1I GCAGC 3 cut(s) 447, 580, 602
Bsu15I ATCGAT 1 cut(s) 684
BsuRI GGCC 2 cut(s) 404, 738
BsuTUI ATCGAT 1 cut(s) 684
BtsCI GGATG 3 cut(s) 150, 156, 349
Cac8I GCNNGC 1 cut(s) 492
Cfr13I GGNCC 1 cut(s) 736
ClaI ATCGAT 1 cut(s) 684
CseI GACGC 1 cut(s) 467
Csp6I GTAC 1 cut(s) 271
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 6 cut(s) 136, 290, 326, 348, 390, 608
DpnI GATC 2 cut(s) 545, 714
DpnII GATC 2 cut(s) 543, 712
EaeI YGGCCR 1 cut(s) 402
Eam1104I CTCTTC 5 cut(s) 44, 116, 198, 248, 368
EarI CTCTTC 5 cut(s) 44, 116, 198, 248, 368
Ecl136II GAGCTC 1 cut(s) 265
Eco24I GRGCYC 2 cut(s) 150, 267
Eco31I GGTCTC 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 265
Eco88I CYCGRG 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 511
EcoT22I ATGCAT 1 cut(s) 530
EcoT38I GRGCYC 2 cut(s) 150, 267
FaiI YATR 5 cut(s) 213, 336, 588, 723, 751
FauI CCCGC 1 cut(s) 237
Fnu4HI GCNGC 4 cut(s) 251, 461, 591, 594
FokI GGATG 3 cut(s) 137, 143, 356
FriOI GRGCYC 2 cut(s) 150, 267
Fsp4HI GCNGC 4 cut(s) 251, 461, 591, 594
FspBI CTAG 4 cut(s) 200, 339, 491, 726
GluI GCNGC 4 cut(s) 251, 461, 591, 594
GsaI CCCAGC 1 cut(s) 737
GsuI CTGGAG 1 cut(s) 737
HaeIII GGCC 2 cut(s) 404, 738
HapII CCGG 5 cut(s) 254, 282, 401, 416, 576
HgaI GACGC 1 cut(s) 467
Hin1I GRCGYC 1 cut(s) 500
HincII GTYRAC 1 cut(s) 657
HindII GTYRAC 1 cut(s) 657
HinfI GANTC 5 cut(s) 179, 278, 300, 355, 742
HpaII CCGG 5 cut(s) 254, 282, 401, 416, 576
HphI GGTGA 4 cut(s) 34, 91, 364, 634
Hpy166II GTNNAC 3 cut(s) 273, 630, 657
Hpy188I TCNGA 4 cut(s) 145, 434, 483, 543
Hpy188III TCNNGA 4 cut(s) 235, 304, 646, 716
Hpy8I GTNNAC 3 cut(s) 273, 630, 657
Hpy99I CGWCG 3 cut(s) 434, 460, 483
HpyAV CCTTC 2 cut(s) 301, 686
HpyCH4III ACNGT 1 cut(s) 438
HpyCH4IV ACGT 1 cut(s) 500
HpyCH4V TGCA 3 cut(s) 528, 590, 596
HpyF10VI GCNNNNNNNGC 4 cut(s) 238, 247, 344, 469
HpyF3I CTNAG 6 cut(s) 136, 290, 326, 348, 390, 608
HpySE526I ACGT 1 cut(s) 500
Hsp92I GRCGYC 1 cut(s) 500
Kzo9I GATC 2 cut(s) 543, 712
LguI GCTCTTC 1 cut(s) 248
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 3 cut(s) 447, 580, 602
LweI GCATC 3 cut(s) 334, 537, 676
MaeI CTAG 4 cut(s) 200, 339, 491, 726
MaeII ACGT 1 cut(s) 500
MaeIII GTNAC 1 cut(s) 352
MalI GATC 2 cut(s) 545, 714
MbiI CCGCTC 1 cut(s) 232
MboI GATC 2 cut(s) 543, 712
MboII GAAGA 8 cut(s) 8, 31, 88, 103, 215, 235, 385, 496
MhlI GDGCHC 4 cut(s) 150, 267, 289, 296
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 2 cut(s) 412, 461
MnlI CCTC 7 cut(s) 47, 112, 119, 127, 180, 378, 385
Mph1103I ATGCAT 1 cut(s) 530
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 5 cut(s) 254, 282, 401, 416, 576
MspR9I CCNGG 3 cut(s) 401, 513, 576
MvaI CCWGG 1 cut(s) 513
MwoI GCNNNNNNNGC 4 cut(s) 238, 247, 344, 469
NciI CCSGG 2 cut(s) 401, 576
NdeII GATC 2 cut(s) 543, 712
NheI GCTAGC 1 cut(s) 490
NlaIV GGNNCC 2 cut(s) 147, 286
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 1 cut(s) 352
NsiI ATGCAT 1 cut(s) 530
PaeR7I CTCGAG 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 4 cut(s) 179, 278, 300, 742
PkrI GCNGC 4 cut(s) 252, 462, 592, 595
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
Psp124BI GAGCTC 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 511
PspFI CCCAGC 1 cut(s) 733
PspGI CCWGG 1 cut(s) 511
PspN4I GGNNCC 2 cut(s) 147, 286
PspPI GGNCC 1 cut(s) 736
PvuII CAGCTG 1 cut(s) 593
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SacI GAGCTC 1 cut(s) 267
SapI GCTCTTC 1 cut(s) 248
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 4 cut(s) 251, 461, 591, 594
Sau3AI GATC 2 cut(s) 543, 712
Sau96I GGNCC 1 cut(s) 736
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 3 cut(s) 401, 513, 576
SduI GDGCHC 4 cut(s) 150, 267, 289, 296
SfaNI GCATC 3 cut(s) 334, 537, 676
Sfr274I CTCGAG 1 cut(s) 233
SlaI CTCGAG 1 cut(s) 233
SmlI CTYRAG 3 cut(s) 233, 266, 357
SmoI CTYRAG 3 cut(s) 233, 266, 357
SsiI CCGC 3 cut(s) 230, 251, 599
SspI AATATT 1 cut(s) 319
SspMI CTAG 4 cut(s) 200, 339, 491, 726
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 3 cut(s) 399, 511, 574
TaaI ACNGT 1 cut(s) 438
TaiI ACGT 1 cut(s) 503
TaqI TCGA 5 cut(s) 189, 222, 234, 314, 684
TaqII GACCGA 1 cut(s) 275
TatI WGTACW 1 cut(s) 270
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 4 cut(s) 179, 278, 300, 742
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 3 cut(s) 460, 590, 593
Tsp45I GTSAC 1 cut(s) 352
XhoI CTCGAG 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 4 cut(s) 200, 339, 491, 726
ZraI GACGTC 1 cut(s) 501
Zsp2I ATGCAT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.