Rroxscaffold_7G00162440

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009883
Physical Location & Seq
Forward (+)
4939336 .. 4941510
2175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162440.1

Sequence Viewer

Length: 1035 bp
ATGGTTCTGCTTCATCTTCCACGAAGCCACATCTCCCTCTTCACCCACTTCACTCACTTCTCAAAACCCAAACCCCCCACAAACCTAAACCCCATCTTCACCTCCACCCTCTTCTCCTCCCCCAAATCCACTATCTCTGTCTCGGAGCCCATCCCCATCTCGCCTCTCCCAGAATCCCACATCGAACCAACCCTAGAAGAGTTCCATACCCAACTCGAAATCCCGCTCGAGAAGCTCTTCGTGCCGCCGGAGACCGAGCTCAAGTACACCGAATCCGGTGCCCTGAGCACGAGAATCTTGAAGGGGTCGAATATTTTGCTGAGCAAGTATGCTAGGGATGCTCAGGTGACTCAAGCCGAGTTTGTGAAGAGTAGTGTGAGGACTGAGGATTGCCCGGCCAATGGTCTGCCGGAGTTTGCGCTCGTCGGACGGTCAAATGTCGGCAAGTCATCGCTGCTTAACTCGCTTGTGCGTCGGAAGAAGCTAGCTTTGACGTCCAAGAAGCCTGGGAAAACACAATGCATCAATCATTTTCGGATCAATGATAGCTGGTATTTGGTGGATTTGCCTGGCTACGGCTTCAAAGGGGGTGCAAACCCTAAGGCTTTAGTTTCTTCACAGTTCACATTGTACATTTGTACCCAGTATTCAGGGTATGCAGCTGCACCGCAGGAACTTAGAACTGATTGGGTGAAGTTTACTAAAGACTACTTCCTGAATAGGTCAACATTAGTTTCAGTTTTCCTTCTCATCGATGCCAGTATTCCTGCCAAAAAGATTGATCTGGAGTATGCTAGTTGGCTGGGCCAGAATCAGATCCCCATGACATTAATATTCACCAAATGTGACAAGCGGAAGAAGAAAAGACATGGAGGAAAAAGAGCAGAAGAAAATGTGAACGATTTTCAGGAGTTAATTCGTGGCTTCTTCCAGACAACACCACCATGGATTATGACCAGCAGCTTTACCAATCAGGGTCGTGATGAGATGTTATTGCATATGGCTCAGCTGCGGAATTATTGGCTTAAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

344

Amino Acids

39.05

Weight (kDa)

9.5

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 139 - 281 9.4e-17 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 497
AccB1I GGYRCC 1 cut(s) 278
AccBSI CCGCTC 1 cut(s) 226
AciI CCGC 5 cut(s) 224, 245, 668, 853, 1012
AclWI GGATC 2 cut(s) 545, 811
AcoI YGGCCR 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 494
AfaI GTAC 3 cut(s) 266, 632, 640
AfiI CCNNNNNNNGG 2 cut(s) 401, 575
AflII CTTAAG 1 cut(s) 1025
AgsI TTSAA 2 cut(s) 301, 583
AjnI CCWGG 2 cut(s) 505, 568
AluBI AGCT 8 cut(s) 235, 259, 484, 488, 549, 662, 963, 1009
AluI AGCT 8 cut(s) 235, 259, 484, 488, 549, 662, 963, 1009
Alw21I GWGCWC 2 cut(s) 261, 290
Alw26I GTCTC 2 cut(s) 145, 245
AlwI GGATC 2 cut(s) 545, 811
Ama87I CYCGRG 1 cut(s) 227
AoxI GGCC 2 cut(s) 396, 805
ApeKI GCWGC 5 cut(s) 454, 659, 662, 960, 1009
AseI ATTAAT 1 cut(s) 830
Asp700I GAANNNNTTC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 421
AspS9I GGNCC 1 cut(s) 805
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 5 cut(s) 34, 91, 358, 703, 829
AsuNHI GCTAGC 1 cut(s) 484
AvaI CYCGRG 1 cut(s) 227
AxyI CCTNAGG 1 cut(s) 600
BaeGI GKGCMC 1 cut(s) 283
BaeI ACNNNNGTAYC 2 cut(s) 622, 655
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 2 cut(s) 150, 261
BauI CACGAG 1 cut(s) 289
Bbv12I GWGCWC 2 cut(s) 261, 290
BbvI GCAGC 5 cut(s) 441, 649, 671, 972, 996
BccI CCATC 3 cut(s) 101, 158, 164
BceAI ACGGC 1 cut(s) 592
BcgI CGANNNNNNTGC 4 cut(s) 260, 294, 298, 332
BciT130I CCWGG 2 cut(s) 507, 570
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 2 cut(s) 145, 245
BfaI CTAG 5 cut(s) 194, 333, 485, 795, 1033
BfrI CTTAAG 1 cut(s) 1025
BisI GCNGC 6 cut(s) 245, 455, 660, 663, 961, 1010
BlpI GCTNAGC 2 cut(s) 320, 1005
BlsI GCNGC 6 cut(s) 246, 456, 661, 664, 962, 1011
Bme1390I CCNGG 3 cut(s) 395, 507, 570
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 805
BmiI GGNNCC 2 cut(s) 147, 280
BmrFI CCNGG 3 cut(s) 395, 507, 570
BmrI ACTGGG 1 cut(s) 637
BmsI GCATC 3 cut(s) 328, 531, 745
BmtI GCTAGC 1 cut(s) 488
BmuI ACTGGG 1 cut(s) 637
BpmI CTGGAG 1 cut(s) 806
Bpu10I CCTNAGC 2 cut(s) 284, 342
Bpu1102I GCTNAGC 2 cut(s) 320, 1005
BpuEI CTTGAG 2 cut(s) 245, 336
BpuMI CCSGG 1 cut(s) 395
Bsa29I ATCGAT 1 cut(s) 753
BsaHI GRCGYC 1 cut(s) 494
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 506, 944
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 2 cut(s) 401, 575
Bse1I ACTGG 2 cut(s) 643, 759
Bse21I CCTNAGG 1 cut(s) 600
BseBI CCWGG 2 cut(s) 507, 570
BseCI ATCGAT 1 cut(s) 753
BseDI CCNNGG 2 cut(s) 506, 944
BseGI GGATG 2 cut(s) 150, 343
BseLI CCNNNNNNNGG 2 cut(s) 401, 575
BseMII CTCAG 5 cut(s) 275, 311, 356, 375, 1019
BseNI ACTGG 2 cut(s) 643, 759
BseRI GAGGAG 1 cut(s) 106
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 5 cut(s) 441, 649, 671, 972, 996
BseYI CCCAGC 1 cut(s) 802
BsgI GTGCAG 1 cut(s) 648
BshFI GGCC 2 cut(s) 398, 807
BshNI GGYRCC 1 cut(s) 278
BshVI ATCGAT 1 cut(s) 753
BsiHKAI GWGCWC 2 cut(s) 261, 290
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 4 cut(s) 248, 276, 395, 410
BslI CCNNNNNNNGG 2 cut(s) 401, 575
BsmAI GTCTC 2 cut(s) 145, 245
BsnI GGCC 2 cut(s) 398, 807
Bso31I GGTCTC 1 cut(s) 245
BsoBI CYCGRG 1 cut(s) 227
Bsp1286I GDGCHC 4 cut(s) 150, 261, 283, 290
Bsp1407I TGTACA 1 cut(s) 630
Bsp143I GATC 3 cut(s) 537, 781, 816
Bsp1720I GCTNAGC 2 cut(s) 320, 1005
Bsp19I CCATGG 1 cut(s) 944
BspACI CCGC 5 cut(s) 224, 245, 668, 853, 1012
BspANI GGCC 2 cut(s) 398, 807
BspCNI CTCAG 5 cut(s) 276, 312, 355, 376, 1018
BspDI ATCGAT 1 cut(s) 753
BspLI GGNNCC 2 cut(s) 147, 280
BspOI GCTAGC 1 cut(s) 488
BspPI GGATC 2 cut(s) 545, 811
BspQI GCTCTTC 1 cut(s) 242
BspT107I GGYRCC 1 cut(s) 278
BspTI CTTAAG 1 cut(s) 1025
BspTNI GGTCTC 1 cut(s) 245
BsrBI CCGCTC 1 cut(s) 226
BsrGI TGTACA 1 cut(s) 630
BsrI ACTGG 2 cut(s) 643, 759
BssECI CCNNGG 2 cut(s) 506, 944
BssMI GATC 3 cut(s) 537, 781, 816
BssNI GRCGYC 1 cut(s) 494
BssSI CACGAG 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 944
Bst2BI CACGAG 1 cut(s) 289
Bst2UI CCWGG 2 cut(s) 507, 570
Bst4CI ACNGT 2 cut(s) 432, 621
Bst6I CTCTTC 5 cut(s) 44, 116, 192, 242, 362
BstACI GRCGYC 1 cut(s) 494
BstAFI CTTAAG 1 cut(s) 1025
BstAUI TGTACA 1 cut(s) 630
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 7 cut(s) 284, 320, 342, 384, 600, 677, 1005
BstDSI CCRYGG 1 cut(s) 944
BstF5I GGATG 2 cut(s) 150, 343
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 3 cut(s) 540, 784, 819
BstMAI GTCTC 2 cut(s) 145, 245
BstMBI GATC 3 cut(s) 537, 781, 816
BstMWI GCNNNNNNNGC 4 cut(s) 232, 241, 338, 463
BstNI CCWGG 2 cut(s) 507, 570
BstSCI CCNGG 3 cut(s) 393, 505, 568
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 5 cut(s) 441, 649, 671, 972, 996
BstX2I RGATCY 1 cut(s) 816
BstYI RGATCY 1 cut(s) 816
Bsu15I ATCGAT 1 cut(s) 753
Bsu36I CCTNAGG 1 cut(s) 600
BsuRI GGCC 2 cut(s) 398, 807
BsuTUI ATCGAT 1 cut(s) 753
BtgI CCRYGG 1 cut(s) 944
BtgZI GCGATG 1 cut(s) 435
BtsCI GGATG 2 cut(s) 150, 343
Cac8I GCNNGC 1 cut(s) 486
CfoI GCGC 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 805
ClaI ATCGAT 1 cut(s) 753
CseI GACGC 1 cut(s) 461
Csp6I GTAC 3 cut(s) 265, 631, 639
CviAII CATG 3 cut(s) 823, 869, 945
CviQI GTAC 3 cut(s) 265, 631, 639
DdeI CTNAG 7 cut(s) 284, 320, 342, 384, 600, 677, 1005
DpnI GATC 3 cut(s) 539, 783, 818
DpnII GATC 3 cut(s) 537, 781, 816
EaeI YGGCCR 1 cut(s) 396
Eam1104I CTCTTC 5 cut(s) 44, 116, 192, 242, 362
EarI CTCTTC 5 cut(s) 44, 116, 192, 242, 362
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 944
Eco24I GRGCYC 2 cut(s) 150, 261
Eco31I GGTCTC 1 cut(s) 245
Eco53kI GAGCTC 1 cut(s) 259
Eco81I CCTNAGG 1 cut(s) 600
Eco88I CYCGRG 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 259
EcoRII CCWGG 2 cut(s) 505, 568
EcoT14I CCWWGG 1 cut(s) 944
EcoT22I ATGCAT 1 cut(s) 524
EcoT38I GRGCYC 2 cut(s) 150, 261
ErhI CCWWGG 1 cut(s) 944
FaeI CATG 3 cut(s) 826, 872, 948
FatI CATG 3 cut(s) 822, 868, 944
FauI CCCGC 1 cut(s) 231
FauNDI CATATG 1 cut(s) 999
Fnu4HI GCNGC 6 cut(s) 245, 455, 660, 663, 961, 1010
FokI GGATG 2 cut(s) 137, 350
FriOI GRGCYC 2 cut(s) 150, 261
Fsp4HI GCNGC 6 cut(s) 245, 455, 660, 663, 961, 1010
FspBI CTAG 5 cut(s) 194, 333, 485, 795, 1033
GlaI GCGC 1 cut(s) 420
GluI GCNGC 6 cut(s) 245, 455, 660, 663, 961, 1010
GsaI CCCAGC 1 cut(s) 806
GsuI CTGGAG 1 cut(s) 806
HaeIII GGCC 2 cut(s) 398, 807
HapII CCGG 4 cut(s) 248, 276, 395, 410
HgaI GACGC 1 cut(s) 461
HhaI GCGC 1 cut(s) 421
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 3 cut(s) 826, 872, 948
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HincII GTYRAC 1 cut(s) 726
HindII GTYRAC 1 cut(s) 726
HinfI GANTC 5 cut(s) 173, 272, 294, 349, 811
HpaII CCGG 4 cut(s) 248, 276, 395, 410
HphI GGTGA 5 cut(s) 34, 91, 358, 703, 829
Hpy166II GTNNAC 5 cut(s) 267, 624, 699, 726, 898
Hpy188I TCNGA 5 cut(s) 145, 428, 477, 537, 816
Hpy188III TCNNGA 7 cut(s) 229, 298, 715, 785, 908, 931, 980
Hpy8I GTNNAC 5 cut(s) 267, 624, 699, 726, 898
Hpy99I CGWCG 2 cut(s) 428, 477
HpyAV CCTTC 2 cut(s) 295, 755
HpyCH4III ACNGT 2 cut(s) 432, 621
HpyCH4IV ACGT 1 cut(s) 494
HpyCH4V TGCA 5 cut(s) 522, 593, 659, 665, 997
HpyF10VI GCNNNNNNNGC 4 cut(s) 232, 241, 338, 463
HpyF3I CTNAG 7 cut(s) 284, 320, 342, 384, 600, 677, 1005
HpySE526I ACGT 1 cut(s) 494
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 3 cut(s) 826, 872, 948
HspAI GCGC 1 cut(s) 419
Kzo9I GATC 3 cut(s) 537, 781, 816
LguI GCTCTTC 1 cut(s) 242
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 5 cut(s) 441, 649, 671, 972, 996
LweI GCATC 3 cut(s) 328, 531, 745
MaeI CTAG 5 cut(s) 194, 333, 485, 795, 1033
MaeII ACGT 1 cut(s) 494
MaeIII GTNAC 2 cut(s) 346, 845
MalI GATC 3 cut(s) 539, 783, 818
MbiI CCGCTC 1 cut(s) 226
MboI GATC 3 cut(s) 537, 781, 816
MflI RGATCY 1 cut(s) 816
MhlI GDGCHC 4 cut(s) 150, 261, 283, 290
MluCI AATT 2 cut(s) 915, 1015
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 2 cut(s) 406, 455
MnlI CCTC 8 cut(s) 47, 112, 119, 127, 174, 372, 379, 866
Mph1103I ATGCAT 1 cut(s) 524
MroXI GAANNNNTTC 1 cut(s) 236
MseI TTAA 4 cut(s) 459, 830, 914, 1026
MslI CAYNNNNRTG 1 cut(s) 943
MspA1I CMGCKG 2 cut(s) 662, 1009
MspCI CTTAAG 1 cut(s) 1025
MspI CCGG 4 cut(s) 248, 276, 395, 410
MspR9I CCNGG 3 cut(s) 395, 507, 570
MvaI CCWGG 2 cut(s) 507, 570
MwoI GCNNNNNNNGC 4 cut(s) 232, 241, 338, 463
NciI CCSGG 1 cut(s) 395
NcoI CCATGG 1 cut(s) 944
NdeI CATATG 1 cut(s) 999
NdeII GATC 3 cut(s) 537, 781, 816
NheI GCTAGC 1 cut(s) 484
NlaIII CATG 3 cut(s) 826, 872, 948
NlaIV GGNNCC 2 cut(s) 147, 280
NmeAIII GCCGAG 1 cut(s) 382
NmuCI GTSAC 2 cut(s) 346, 845
NsiI ATGCAT 1 cut(s) 524
PaeR7I CTCGAG 1 cut(s) 227
PciSI GCTCTTC 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 236
PfeI GAWTC 4 cut(s) 173, 272, 294, 811
PkrI GCNGC 6 cut(s) 246, 456, 661, 664, 962, 1011
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PshBI ATTAAT 1 cut(s) 830
Psp124BI GAGCTC 1 cut(s) 261
Psp6I CCWGG 2 cut(s) 505, 568
PspFI CCCAGC 1 cut(s) 802
PspGI CCWGG 2 cut(s) 505, 568
PspN4I GGNNCC 2 cut(s) 147, 280
PspPI GGNCC 1 cut(s) 805
PsuI RGATCY 1 cut(s) 816
PvuII CAGCTG 2 cut(s) 662, 1009
RsaI GTAC 3 cut(s) 266, 632, 640
RsaNI GTAC 3 cut(s) 265, 631, 639
RseI CAYNNNNRTG 1 cut(s) 943
SacI GAGCTC 1 cut(s) 261
SapI GCTCTTC 1 cut(s) 242
SaqAI TTAA 4 cut(s) 459, 830, 914, 1026
SatI GCNGC 6 cut(s) 245, 455, 660, 663, 961, 1010
Sau3AI GATC 3 cut(s) 537, 781, 816
Sau96I GGNCC 1 cut(s) 805
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 3 cut(s) 395, 507, 570
SduI GDGCHC 4 cut(s) 150, 261, 283, 290
SfaNI GCATC 3 cut(s) 328, 531, 745
Sfr274I CTCGAG 1 cut(s) 227
SlaI CTCGAG 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 943
SmlI CTYRAG 4 cut(s) 227, 260, 351, 1025
SmoI CTYRAG 4 cut(s) 227, 260, 351, 1025
Sse9I AATT 2 cut(s) 915, 1015
SsiI CCGC 5 cut(s) 224, 245, 668, 853, 1012
SspI AATATT 2 cut(s) 313, 834
SspMI CTAG 5 cut(s) 194, 333, 485, 795, 1033
SstI GAGCTC 1 cut(s) 261
StyD4I CCNGG 3 cut(s) 393, 505, 568
StyI CCWWGG 1 cut(s) 944
TaaI ACNGT 2 cut(s) 432, 621
TaiI ACGT 1 cut(s) 497
TaqI TCGA 5 cut(s) 183, 216, 228, 308, 753
TaqII GACCGA 1 cut(s) 269
TasI AATT 2 cut(s) 915, 1015
TatI WGTACW 2 cut(s) 264, 630
TauI GCSGC 1 cut(s) 247
TfiI GAWTC 4 cut(s) 173, 272, 294, 811
Tru1I TTAA 4 cut(s) 459, 830, 914, 1026
Tru9I TTAA 4 cut(s) 459, 830, 914, 1026
TseFI GTSAC 2 cut(s) 346, 845
TseI GCWGC 5 cut(s) 454, 659, 662, 960, 1009
Tsp45I GTSAC 2 cut(s) 346, 845
Vha464I CTTAAG 1 cut(s) 1025
VspI ATTAAT 1 cut(s) 830
XhoI CTCGAG 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 236
XspI CTAG 5 cut(s) 194, 333, 485, 795, 1033
ZraI GACGTC 1 cut(s) 495
Zsp2I ATGCAT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.