Rorug06G0343200

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009883
Physical Location & Seq
Forward (+)
49397226 .. 49399823
2598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0343200.1

Sequence Viewer

Length: 969 bp
ATGGAGGATGCCCAAGAAGTATCTGAGACAATGTCGGAGGGATCATCCGAAAAGATACAGGAAACTCGCGATGAAATGCTCTCCAGGCACAGAAAAGAGACTTCAAAGTTGCAGGACAAGGAAATTCAATTGAAAAAGGCTGCAGCAAAAGGTAGCAAGGCTGAACAAAAAGCTAAGAAAAAGCAGGTGGAGGAAGAGATTTCTCGACTTTCTGCTGAGCTTAAAGAGAAACAAGCCGAAGAACTTGCATCATTAGGCTATAGCAGCACTAACAATGGAGGTGAAAAGAGTAATCTGGATACTTTAGTGAAGGCCATAGCTGGTGTTTCTGTAAGCAGTCAACCTGAGAATGCAAAGCCTAGCAAGAGTTCAAAGAGAAAAGTGAAAAGGGCTCAGGAGGATGCAGCAAGGGAGCAGAGAATTCAAGAAGAGCAGAGCAACTTAGTAAGCGATCGAATGGTTGAAGATGAGAAACTAGGAAAAAAGCTTGAACCCCTTGGTTTGACAATTAATGAGATAAAGCCTGATGGTCATTGCCTCTACCGCGCTATCCAGGATCAGCTGGCTCACCTTTCTGGAGGTTCTTCACCTTACACATACCAAGAGCTTCGAGAAATGGTGGCTGCGTATATGAGGAAGCATGCACCTGATTTCCTCCCATTTTTCTTGTCAGACAATCAAGGAGATGGTGATTCTGATGATTCCCTTGCTGAAAGGTTTGAGAATTACTGTAAGGAAGTGGAGTCAACAGCAACATGGGGAGGACAGCTAGAGCTTGGGGCTTTAACTCACTGCCTTAAAAAGCCAATCAAGGTATACTCAGGATCATTCCCTGATGTGGAGATGGGTAAGGAGTACAATTCTGAGAGTGGAAATGGTTTTGGTTCTTCTGGTTCGAGTATTATGTTGTCATATCATAAGCACGCATTCGGGCTTGGTGAGCACTATAATTCTGTGGTCCCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

322

Amino Acids

35.69

Weight (kDa)

5.56

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 174 - 316 7.3e-34 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 175
Acc36I ACCTGC 1 cut(s) 175
AccI GTMKAC 1 cut(s) 816
AccII CGCG 2 cut(s) 69, 546
AciI CCGC 1 cut(s) 544
AclWI GGATC 3 cut(s) 49, 564, 832
AcsI RAATTY 2 cut(s) 123, 420
AfaI GTAC 1 cut(s) 857
AfiI CCNNNNNNNGG 1 cut(s) 838
AgsI TTSAA 7 cut(s) 105, 128, 133, 372, 425, 464, 491
AjnI CCWGG 2 cut(s) 83, 552
AluBI AGCT 8 cut(s) 173, 220, 320, 487, 562, 607, 769, 775
AluI AGCT 8 cut(s) 173, 220, 320, 487, 562, 607, 769, 775
Alw21I GWGCWC 1 cut(s) 945
Alw26I GTCTC 2 cut(s) 20, 92
AlwI GGATC 3 cut(s) 49, 564, 832
AoxI GGCC 1 cut(s) 312
ApeKI GCWGC 5 cut(s) 140, 143, 264, 404, 623
ApoI RAATTY 2 cut(s) 123, 420
AseI ATTAAT 1 cut(s) 510
AspLEI GCGC 1 cut(s) 548
AspS9I GGNCC 1 cut(s) 958
AsuHPI GGTGA 5 cut(s) 293, 560, 579, 701, 950
AvaII GGWCC 1 cut(s) 958
BaeI ACNNNNGTAYC 2 cut(s) 291, 324
BanII GRGCYC 1 cut(s) 394
Bbv12I GWGCWC 1 cut(s) 945
BbvI GCAGC 5 cut(s) 127, 155, 276, 416, 610
BccI CCATC 3 cut(s) 521, 680, 838
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BciT130I CCWGG 2 cut(s) 85, 554
BciVI GTATCC 1 cut(s) 292
BcoDI GTCTC 2 cut(s) 20, 92
BfaI CTAG 3 cut(s) 360, 476, 770
BfmI CTRYAG 2 cut(s) 141, 259
BfuAI ACCTGC 1 cut(s) 175
BfuI GTATCC 1 cut(s) 292
BisI GCNGC 5 cut(s) 141, 144, 265, 405, 624
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 5 cut(s) 142, 145, 266, 406, 625
Bme1390I CCNGG 2 cut(s) 85, 554
Bme18I GGWCC 1 cut(s) 958
BmgT120I GGNCC 1 cut(s) 958
BmiI GGNNCC 1 cut(s) 960
BmrFI CCNGG 2 cut(s) 85, 554
BmsI GCATC 2 cut(s) 257, 391
BpmI CTGGAG 2 cut(s) 67, 597
Bpu10I CCTNAGC 1 cut(s) 393
Bpu1102I GCTNAGC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 496
Bsc4I CCNNNNNNNGG 1 cut(s) 838
Bse3DI GCAATG 1 cut(s) 532
BseBI CCWGG 2 cut(s) 85, 554
BseDI CCNNGG 1 cut(s) 496
BseGI GGATG 3 cut(s) 13, 44, 406
BseLI CCNNNNNNNGG 1 cut(s) 838
BseMI GCAATG 1 cut(s) 532
BseMII CTCAG 6 cut(s) 15, 207, 336, 407, 834, 855
BseXI GCAGC 5 cut(s) 127, 155, 276, 416, 610
Bsh1236I CGCG 2 cut(s) 69, 546
Bsh1285I CGRYCG 1 cut(s) 454
BshFI GGCC 1 cut(s) 314
BsiEI CGRYCG 1 cut(s) 454
BsiHKAI GWGCWC 1 cut(s) 945
BslFI GGGAC 1 cut(s) 944
BslI CCNNNNNNNGG 1 cut(s) 838
BsmAI GTCTC 2 cut(s) 20, 92
BsmFI GGGAC 1 cut(s) 944
BsmI GAATGC 2 cut(s) 355, 926
BsnI GGCC 1 cut(s) 314
Bsp1286I GDGCHC 2 cut(s) 394, 945
Bsp143I GATC 4 cut(s) 41, 451, 556, 824
Bsp1720I GCTNAGC 1 cut(s) 216
Bsp68I TCGCGA 1 cut(s) 69
BspACI CCGC 1 cut(s) 544
BspANI GGCC 1 cut(s) 314
BspCNI CTCAG 6 cut(s) 16, 208, 337, 406, 833, 856
BspFNI CGCG 2 cut(s) 69, 546
BspLI GGNNCC 1 cut(s) 960
BspMAI CTGCAG 1 cut(s) 145
BspMI ACCTGC 1 cut(s) 175
BspPI GGATC 3 cut(s) 49, 564, 832
BspQI GCTCTTC 1 cut(s) 423
BsrDI GCAATG 1 cut(s) 532
BssECI CCNNGG 1 cut(s) 496
BssMI GATC 4 cut(s) 41, 451, 556, 824
BssNAI GTATAC 1 cut(s) 817
BssT1I CCWWGG 1 cut(s) 496
Bst1107I GTATAC 1 cut(s) 817
Bst2UI CCWGG 2 cut(s) 85, 554
Bst4CI ACNGT 1 cut(s) 731
Bst6I CTCTTC 2 cut(s) 189, 423
BstC8I GCNNGC 3 cut(s) 564, 642, 924
BstDEI CTNAG 8 cut(s) 24, 174, 216, 345, 393, 442, 820, 864
BstF5I GGATG 3 cut(s) 13, 44, 406
BstFNI CGCG 2 cut(s) 69, 546
BstHHI GCGC 1 cut(s) 548
BstKTI GATC 4 cut(s) 44, 454, 559, 827
BstMAI GTCTC 2 cut(s) 20, 92
BstMBI GATC 4 cut(s) 41, 451, 556, 824
BstMCI CGRYCG 1 cut(s) 454
BstMWI GCNNNNNNNGC 4 cut(s) 85, 264, 543, 940
BstNI CCWGG 2 cut(s) 85, 554
BstNSI RCATGY 1 cut(s) 644
BstSCI CCNGG 2 cut(s) 83, 552
BstSFI CTRYAG 2 cut(s) 141, 259
BstUI CGCG 2 cut(s) 69, 546
BstV1I GCAGC 5 cut(s) 127, 155, 276, 416, 610
BstZ17I GTATAC 1 cut(s) 817
BsuI GTATCC 1 cut(s) 292
BsuRI GGCC 1 cut(s) 314
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 3 cut(s) 13, 44, 406
BtsI GCAGTG 1 cut(s) 790
BtsIMutI CAGTG 1 cut(s) 790
BtuMI TCGCGA 1 cut(s) 69
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 3 cut(s) 564, 642, 924
CfoI GCGC 1 cut(s) 548
Cfr13I GGNCC 1 cut(s) 958
Csp6I GTAC 1 cut(s) 856
CviAII CATG 2 cut(s) 641, 756
CviQI GTAC 1 cut(s) 856
DdeI CTNAG 8 cut(s) 24, 174, 216, 345, 393, 442, 820, 864
DpnI GATC 4 cut(s) 43, 453, 558, 826
DpnII GATC 4 cut(s) 41, 451, 556, 824
Eam1104I CTCTTC 2 cut(s) 189, 423
EarI CTCTTC 2 cut(s) 189, 423
Eco130I CCWWGG 1 cut(s) 496
Eco24I GRGCYC 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 958
EcoRI GAATTC 1 cut(s) 420
EcoRII CCWGG 2 cut(s) 83, 552
EcoT14I CCWWGG 1 cut(s) 496
EcoT38I GRGCYC 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 496
FaeI CATG 2 cut(s) 644, 759
FaqI GGGAC 1 cut(s) 944
FatI CATG 2 cut(s) 640, 755
FblI GTMKAC 1 cut(s) 816
Fnu4HI GCNGC 5 cut(s) 141, 144, 265, 405, 624
FokI GGATG 3 cut(s) 20, 31, 413
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 5 cut(s) 141, 144, 265, 405, 624
FspBI CTAG 3 cut(s) 360, 476, 770
GlaI GCGC 1 cut(s) 547
GluI GCNGC 5 cut(s) 141, 144, 265, 405, 624
GsuI CTGGAG 2 cut(s) 67, 597
HaeIII GGCC 1 cut(s) 314
HhaI GCGC 1 cut(s) 548
Hin1II CATG 2 cut(s) 644, 759
Hin6I GCGC 1 cut(s) 546
HinP1I GCGC 1 cut(s) 546
HincII GTYRAC 2 cut(s) 341, 747
HindII GTYRAC 2 cut(s) 341, 747
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 3 cut(s) 692, 701, 743
HphI GGTGA 5 cut(s) 293, 560, 579, 701, 950
Hpy166II GTNNAC 3 cut(s) 341, 747, 817
Hpy188I TCNGA 6 cut(s) 25, 37, 49, 673, 697, 865
Hpy188III TCNNGA 8 cut(s) 68, 204, 296, 395, 425, 576, 611, 822
Hpy8I GTNNAC 3 cut(s) 341, 747, 817
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 1 cut(s) 731
HpyCH4V TGCA 6 cut(s) 112, 143, 248, 353, 404, 644
HpyF10VI GCNNNNNNNGC 4 cut(s) 85, 264, 543, 940
HpyF3I CTNAG 8 cut(s) 24, 174, 216, 345, 393, 442, 820, 864
Hsp92II CATG 2 cut(s) 644, 759
HspAI GCGC 1 cut(s) 546
Kzo9I GATC 4 cut(s) 41, 451, 556, 824
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 1 cut(s) 412
Lsp1109I GCAGC 5 cut(s) 127, 155, 276, 416, 610
LweI GCATC 2 cut(s) 257, 391
MaeI CTAG 3 cut(s) 360, 476, 770
MalI GATC 4 cut(s) 43, 453, 558, 826
MboI GATC 4 cut(s) 41, 451, 556, 824
MboII GAAGA 6 cut(s) 206, 251, 440, 476, 576, 879
MfeI CAATTG 1 cut(s) 128
MhlI GDGCHC 2 cut(s) 394, 945
MluCI AATT 7 cut(s) 123, 128, 420, 507, 724, 859, 949
MlyI GAGTC 1 cut(s) 752
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 9 cut(s) 31, 184, 272, 391, 548, 572, 627, 665, 755
MseI TTAA 4 cut(s) 222, 510, 785, 798
MspA1I CMGCKG 1 cut(s) 562
MspR9I CCNGG 2 cut(s) 85, 554
MunI CAATTG 1 cut(s) 128
Mva1269I GAATGC 2 cut(s) 355, 926
MvaI CCWGG 2 cut(s) 85, 554
MvnI CGCG 2 cut(s) 69, 546
MwoI GCNNNNNNNGC 4 cut(s) 85, 264, 543, 940
NdeII GATC 4 cut(s) 41, 451, 556, 824
NlaIII CATG 2 cut(s) 644, 759
NlaIV GGNNCC 1 cut(s) 960
NruI TCGCGA 1 cut(s) 69
NspI RCATGY 1 cut(s) 644
PaeI GCATGC 1 cut(s) 644
PaqCI CACCTGC 1 cut(s) 175
PciSI GCTCTTC 1 cut(s) 423
PctI GAATGC 2 cut(s) 355, 926
PfeI GAWTC 2 cut(s) 692, 701
PflFI GACNNNGTC 1 cut(s) 31
PfoI TCCNGGA 1 cut(s) 552
PkrI GCNGC 5 cut(s) 142, 145, 266, 406, 625
Ple19I CGATCG 1 cut(s) 454
PleI GAGTC 1 cut(s) 751
PpsI GAGTC 1 cut(s) 751
PshBI ATTAAT 1 cut(s) 510
Psp6I CCWGG 2 cut(s) 83, 552
PspGI CCWGG 2 cut(s) 83, 552
PspN4I GGNNCC 1 cut(s) 960
PspPI GGNCC 1 cut(s) 958
PstI CTGCAG 1 cut(s) 145
PsyI GACNNNGTC 1 cut(s) 31
PvuI CGATCG 1 cut(s) 454
PvuII CAGCTG 1 cut(s) 562
RruI TCGCGA 1 cut(s) 69
RsaI GTAC 1 cut(s) 857
RsaNI GTAC 1 cut(s) 856
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 4 cut(s) 222, 510, 785, 798
SatI GCNGC 5 cut(s) 141, 144, 265, 405, 624
Sau3AI GATC 4 cut(s) 41, 451, 556, 824
Sau96I GGNCC 1 cut(s) 958
SchI GAGTC 1 cut(s) 752
ScrFI CCNGG 2 cut(s) 85, 554
SduI GDGCHC 2 cut(s) 394, 945
SfaNI GCATC 2 cut(s) 257, 391
SfcI CTRYAG 2 cut(s) 141, 259
SinI GGWCC 1 cut(s) 958
SphI GCATGC 1 cut(s) 644
Sse9I AATT 7 cut(s) 123, 128, 420, 507, 724, 859, 949
SsiI CCGC 1 cut(s) 544
SspMI CTAG 3 cut(s) 360, 476, 770
StyD4I CCNGG 2 cut(s) 83, 552
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 1 cut(s) 731
TaqI TCGA 4 cut(s) 205, 454, 610, 896
TasI AATT 7 cut(s) 123, 128, 420, 507, 724, 859, 949
TatI WGTACW 1 cut(s) 855
TfiI GAWTC 2 cut(s) 692, 701
Tru1I TTAA 4 cut(s) 222, 510, 785, 798
Tru9I TTAA 4 cut(s) 222, 510, 785, 798
TscAI CASTG 1 cut(s) 797
TseI GCWGC 5 cut(s) 140, 143, 264, 404, 623
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 1 cut(s) 797
Tth111I GACNNNGTC 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 958
VspI ATTAAT 1 cut(s) 510
XapI RAATTY 2 cut(s) 123, 420
XceI RCATGY 1 cut(s) 644
XmiI GTMKAC 1 cut(s) 816
XspI CTAG 3 cut(s) 360, 476, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.