FvH4_2g36200

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009883
Physical Location & Seq
Forward (+)
26543568 .. 26546388
2821 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36200.t1

Sequence Viewer

Length: 966 bp
ATGGTTCTGCTTCATCATCTTCCACGTAGCCACCTCTCCCTCTTCACCCACTTCACACACTTCTCAAAACCCAAACCCCCCACAACCCTAAACCCCATCTTCACCTCCACCCTCTTCTCCTCCCCCAAATCCACTCTCTCAGTCTCAGACCCCATCCCCATCCCCATCCCCACCCCAGATTCCCACATCGAAACAGCCCTCGAAGACTTCCATACCCAATTCGAAATCCCGCTCGAGAAGCTCTTCGTGCCGCCGGAGACGGAGATAAAGTACACCGAGTCCGGTGCCCTGAGCACCAGAATCTTGAAGGGGTCGAACATTTTGCTGAGCAAGTATGCTACGGATGCTCAGGTGACACAGGCTGAGTTTGTGAAGAGCAGTGTGAGGACTGAGGATTGCCCGGCGAATCCTCTGCCGGAGTTTGCGCTCGTCGGACGGTCAAATGTAGGCAAGTCCTCGCTGCTTAACTCGCTTGTAAGGAGAAAGAAGCTAGCTTTGACCTCCAAGAAGCCTGGAAAAACACAGTGCATCAATCATTTCCGGATCAATGATAGCTGGTATTTAGTGGATTTGCCAGGTTACGGGTATGCAGCTGCACCACAGGAACTTAGAACTGATTGGGTGAAGTTTACTAAAGACTACTTCCTGAATAGGTCAACATTAGTTTCGGTTTTCCTTCTCATCGATGCCAGCATTCCTGCCAAAAAGATTGATCTGGAGTATGCTAGTTGGCTGGGCCAGAATCAGATCCCTATGACATTGATATTCACCAAATGTGACAAGCGGAAGAAGAAAAGAAATGGAGGAAAAAGAGCAGAAGAAAATGTAAACGACTTTCAGGAGTTAATTCGTGGCTACTTCGACACAACACCGCCATGGATCATGACCAGCAGCCTCACCAATCAGGGTCGAGATGAGATGTTATTGCACATGGCTCAGCTGCGGAACTATTGGCTTAAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

322

Amino Acids

36.52

Weight (kDa)

9.33

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 141 - 258 9.6e-19 50S ribosome-binding GTPase
FeoB_N PF02421 141 - 266 7.3e-06 Ferrous iron transport protein B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 284
AccBSI CCGCTC 1 cut(s) 232
AccIII TCCGGA 1 cut(s) 540
AciI CCGC 5 cut(s) 230, 251, 784, 872, 943
AclWI GGATC 3 cut(s) 551, 742, 887
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 581
AflII CTTAAG 1 cut(s) 956
AgsI TTSAA 1 cut(s) 307
AjnI CCWGG 2 cut(s) 511, 574
AluBI AGCT 6 cut(s) 241, 490, 494, 555, 593, 940
AluI AGCT 6 cut(s) 241, 490, 494, 555, 593, 940
Alw21I GWGCWC 1 cut(s) 296
Alw26I GTCTC 2 cut(s) 148, 251
AlwI GGATC 3 cut(s) 551, 742, 887
Ama87I CYCGRG 1 cut(s) 233
Aor13HI TCCGGA 1 cut(s) 540
AoxI GGCC 1 cut(s) 736
ApeKI GCWGC 5 cut(s) 460, 590, 593, 891, 940
Asp700I GAANNNNTTC 1 cut(s) 242
AspLEI GCGC 1 cut(s) 427
AspS9I GGNCC 1 cut(s) 736
AsuC2I CCSGG 1 cut(s) 401
AsuHPI GGTGA 6 cut(s) 37, 94, 364, 634, 760, 889
AsuII TTCGAA 1 cut(s) 222
AsuNHI GCTAGC 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 289
BanI GGYRCC 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 296
BbvI GCAGC 5 cut(s) 447, 580, 602, 903, 927
BccI CCATC 4 cut(s) 104, 161, 167, 173
BcgI CGANNNNNNTGC 6 cut(s) 266, 300, 304, 338, 394, 428
BciT130I CCWGG 2 cut(s) 513, 576
BcnI CCSGG 1 cut(s) 401
BcoDI GTCTC 2 cut(s) 148, 251
BfaI CTAG 3 cut(s) 491, 726, 964
BfrI CTTAAG 1 cut(s) 956
BisI GCNGC 6 cut(s) 251, 461, 591, 594, 892, 941
BlpI GCTNAGC 2 cut(s) 326, 936
BlsI GCNGC 6 cut(s) 252, 462, 592, 595, 893, 942
Bme1390I CCNGG 3 cut(s) 401, 513, 576
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 736
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 3 cut(s) 401, 513, 576
BmsI GCATC 3 cut(s) 334, 537, 676
BmtI GCTAGC 1 cut(s) 494
BpiI GAAGAC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 737
Bpu10I CCTNAGC 2 cut(s) 290, 348
Bpu1102I GCTNAGC 2 cut(s) 326, 936
Bpu14I TTCGAA 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 401
Bsa29I ATCGAT 1 cut(s) 684
BsaAI YACGTR 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 875
BsaWI WCCGGW 2 cut(s) 281, 540
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 581
BseAI TCCGGA 1 cut(s) 540
BseBI CCWGG 2 cut(s) 513, 576
BseCI ATCGAT 1 cut(s) 684
BseDI CCNNGG 1 cut(s) 875
BseGI GGATG 4 cut(s) 153, 159, 165, 349
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMII CTCAG 8 cut(s) 153, 159, 281, 317, 354, 362, 381, 950
BseRI GAGGAG 1 cut(s) 109
BseSI GKGCMC 1 cut(s) 289
BseXI GCAGC 5 cut(s) 447, 580, 602, 903, 927
BseYI CCCAGC 1 cut(s) 733
BsgI GTGCAG 1 cut(s) 579
BshFI GGCC 1 cut(s) 738
BshNI GGYRCC 1 cut(s) 284
BshVI ATCGAT 1 cut(s) 684
BsiHKAI GWGCWC 1 cut(s) 296
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 5 cut(s) 254, 282, 401, 416, 541
BslI CCNNNNNNNGG 1 cut(s) 581
BsmAI GTCTC 2 cut(s) 148, 251
BsmBI CGTCTC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 693
BsnI GGCC 1 cut(s) 738
BsoBI CYCGRG 1 cut(s) 233
Bsp119I TTCGAA 1 cut(s) 222
Bsp1286I GDGCHC 2 cut(s) 289, 296
Bsp13I TCCGGA 1 cut(s) 540
Bsp143I GATC 4 cut(s) 543, 712, 747, 879
Bsp1720I GCTNAGC 2 cut(s) 326, 936
Bsp19I CCATGG 1 cut(s) 875
BspACI CCGC 5 cut(s) 230, 251, 784, 872, 943
BspANI GGCC 1 cut(s) 738
BspCNI CTCAG 8 cut(s) 152, 158, 282, 318, 355, 361, 382, 949
BspDI ATCGAT 1 cut(s) 684
BspEI TCCGGA 1 cut(s) 540
BspHI TCATGA 1 cut(s) 882
BspLI GGNNCC 1 cut(s) 286
BspOI GCTAGC 1 cut(s) 494
BspPI GGATC 3 cut(s) 551, 742, 887
BspQI GCTCTTC 2 cut(s) 248, 368
BspT104I TTCGAA 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 284
BspTI CTTAAG 1 cut(s) 956
BsrBI CCGCTC 1 cut(s) 232
BssECI CCNNGG 1 cut(s) 875
BssMI GATC 4 cut(s) 543, 712, 747, 879
BssT1I CCWWGG 1 cut(s) 875
Bst2UI CCWGG 2 cut(s) 513, 576
Bst4CI ACNGT 2 cut(s) 438, 525
Bst6I CTCTTC 4 cut(s) 47, 119, 248, 368
BstAFI CTTAAG 1 cut(s) 956
BstBAI YACGTR 1 cut(s) 26
BstBI TTCGAA 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 492, 691
BstDEI CTNAG 9 cut(s) 139, 145, 290, 326, 348, 363, 390, 608, 936
BstDSI CCRYGG 1 cut(s) 875
BstF5I GGATG 4 cut(s) 153, 159, 165, 349
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 4 cut(s) 546, 715, 750, 882
BstMAI GTCTC 2 cut(s) 148, 251
BstMBI GATC 4 cut(s) 543, 712, 747, 879
BstMWI GCNNNNNNNGC 4 cut(s) 238, 247, 344, 469
BstNI CCWGG 2 cut(s) 513, 576
BstSCI CCNGG 3 cut(s) 399, 511, 574
BstSLI GKGCMC 1 cut(s) 289
BstV1I GCAGC 5 cut(s) 447, 580, 602, 903, 927
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 747
BstYI RGATCY 1 cut(s) 747
Bsu15I ATCGAT 1 cut(s) 684
BsuRI GGCC 1 cut(s) 738
BsuTUI ATCGAT 1 cut(s) 684
BtgI CCRYGG 1 cut(s) 875
BtsCI GGATG 4 cut(s) 153, 159, 165, 349
BtsI GCAGTG 1 cut(s) 385
BtsIMutI CAGTG 2 cut(s) 385, 530
Cac8I GCNNGC 2 cut(s) 492, 691
CciI TCATGA 1 cut(s) 882
CfoI GCGC 1 cut(s) 427
Cfr13I GGNCC 1 cut(s) 736
ClaI ATCGAT 1 cut(s) 684
Csp6I GTAC 1 cut(s) 271
CviAII CATG 3 cut(s) 876, 883, 931
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 9 cut(s) 139, 145, 290, 326, 348, 363, 390, 608, 936
DpnI GATC 4 cut(s) 545, 714, 749, 881
DpnII GATC 4 cut(s) 543, 712, 747, 879
Eam1104I CTCTTC 4 cut(s) 47, 119, 248, 368
EarI CTCTTC 4 cut(s) 47, 119, 248, 368
Eco130I CCWWGG 1 cut(s) 875
Eco88I CYCGRG 1 cut(s) 233
EcoRII CCWGG 2 cut(s) 511, 574
EcoT14I CCWWGG 1 cut(s) 875
ErhI CCWWGG 1 cut(s) 875
Esp3I CGTCTC 1 cut(s) 251
FaeI CATG 3 cut(s) 879, 886, 934
FaiI YATR 8 cut(s) 213, 336, 588, 723, 755, 877, 884, 932
FatI CATG 3 cut(s) 875, 882, 930
FauI CCCGC 1 cut(s) 237
Fnu4HI GCNGC 6 cut(s) 251, 461, 591, 594, 892, 941
FokI GGATG 4 cut(s) 140, 146, 152, 356
Fsp4HI GCNGC 6 cut(s) 251, 461, 591, 594, 892, 941
FspBI CTAG 3 cut(s) 491, 726, 964
GlaI GCGC 1 cut(s) 426
GluI GCNGC 6 cut(s) 251, 461, 591, 594, 892, 941
GsaI CCCAGC 1 cut(s) 737
GsuI CTGGAG 1 cut(s) 737
HaeIII GGCC 1 cut(s) 738
HapII CCGG 5 cut(s) 254, 282, 401, 416, 541
HhaI GCGC 1 cut(s) 427
Hin1II CATG 3 cut(s) 879, 886, 934
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HincII GTYRAC 1 cut(s) 657
HindII GTYRAC 1 cut(s) 657
HinfI GANTC 5 cut(s) 179, 278, 300, 406, 742
HpaII CCGG 5 cut(s) 254, 282, 401, 416, 541
HphI GGTGA 6 cut(s) 37, 94, 364, 634, 760, 889
Hpy166II GTNNAC 4 cut(s) 273, 630, 657, 829
Hpy188I TCNGA 3 cut(s) 148, 434, 747
Hpy188III TCNNGA 8 cut(s) 235, 304, 541, 646, 716, 839, 883, 911
Hpy8I GTNNAC 4 cut(s) 273, 630, 657, 829
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 2 cut(s) 301, 686
HpyCH4III ACNGT 2 cut(s) 438, 525
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 4 cut(s) 528, 590, 596, 928
HpyF10VI GCNNNNNNNGC 4 cut(s) 238, 247, 344, 469
HpyF3I CTNAG 9 cut(s) 139, 145, 290, 326, 348, 363, 390, 608, 936
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 3 cut(s) 879, 886, 934
HspAI GCGC 1 cut(s) 425
Kpn2I TCCGGA 1 cut(s) 540
Kzo9I GATC 4 cut(s) 543, 712, 747, 879
LguI GCTCTTC 2 cut(s) 248, 368
Lsp1109I GCAGC 5 cut(s) 447, 580, 602, 903, 927
LweI GCATC 3 cut(s) 334, 537, 676
MaeI CTAG 3 cut(s) 491, 726, 964
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 3 cut(s) 352, 578, 776
MalI GATC 4 cut(s) 545, 714, 749, 881
MbiI CCGCTC 1 cut(s) 232
MboI GATC 4 cut(s) 543, 712, 747, 879
MflI RGATCY 1 cut(s) 747
MhlI GDGCHC 2 cut(s) 289, 296
MluCI AATT 2 cut(s) 218, 846
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 1 cut(s) 412
MroI TCCGGA 1 cut(s) 540
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 3 cut(s) 465, 845, 957
MslI CAYNNNNRTG 1 cut(s) 874
MspA1I CMGCKG 2 cut(s) 593, 940
MspCI CTTAAG 1 cut(s) 956
MspI CCGG 5 cut(s) 254, 282, 401, 416, 541
MspR9I CCNGG 3 cut(s) 401, 513, 576
Mva1269I GAATGC 1 cut(s) 693
MvaI CCWGG 2 cut(s) 513, 576
MwoI GCNNNNNNNGC 4 cut(s) 238, 247, 344, 469
NciI CCSGG 1 cut(s) 401
NcoI CCATGG 1 cut(s) 875
NdeII GATC 4 cut(s) 543, 712, 747, 879
NheI GCTAGC 1 cut(s) 490
NlaIII CATG 3 cut(s) 879, 886, 934
NlaIV GGNNCC 1 cut(s) 286
NmuCI GTSAC 2 cut(s) 352, 776
NspV TTCGAA 1 cut(s) 222
PaeR7I CTCGAG 1 cut(s) 233
PagI TCATGA 1 cut(s) 882
PciSI GCTCTTC 2 cut(s) 248, 368
PctI GAATGC 1 cut(s) 693
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 4 cut(s) 179, 300, 406, 742
PkrI GCNGC 6 cut(s) 252, 462, 592, 595, 893, 942
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Ppu21I YACGTR 1 cut(s) 26
Psp6I CCWGG 2 cut(s) 511, 574
PspFI CCCAGC 1 cut(s) 733
PspGI CCWGG 2 cut(s) 511, 574
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 1 cut(s) 736
PsuI RGATCY 1 cut(s) 747
PvuII CAGCTG 2 cut(s) 593, 940
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
RseI CAYNNNNRTG 1 cut(s) 874
SapI GCTCTTC 2 cut(s) 248, 368
SaqAI TTAA 3 cut(s) 465, 845, 957
SatI GCNGC 6 cut(s) 251, 461, 591, 594, 892, 941
Sau3AI GATC 4 cut(s) 543, 712, 747, 879
Sau96I GGNCC 1 cut(s) 736
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 3 cut(s) 401, 513, 576
SduI GDGCHC 2 cut(s) 289, 296
SfaNI GCATC 3 cut(s) 334, 537, 676
Sfr274I CTCGAG 1 cut(s) 233
SfuI TTCGAA 1 cut(s) 222
SlaI CTCGAG 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 874
SmlI CTYRAG 2 cut(s) 233, 956
SmoI CTYRAG 2 cut(s) 233, 956
Sse9I AATT 2 cut(s) 218, 846
SsiI CCGC 5 cut(s) 230, 251, 784, 872, 943
SspMI CTAG 3 cut(s) 491, 726, 964
StyD4I CCNGG 3 cut(s) 399, 511, 574
StyI CCWWGG 1 cut(s) 875
TaaI ACNGT 2 cut(s) 438, 525
TaiI ACGT 1 cut(s) 28
TaqI TCGA 8 cut(s) 189, 201, 222, 234, 314, 684, 861, 910
TasI AATT 2 cut(s) 218, 846
TatI WGTACW 1 cut(s) 270
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 4 cut(s) 179, 300, 406, 742
Tru1I TTAA 3 cut(s) 465, 845, 957
Tru9I TTAA 3 cut(s) 465, 845, 957
TscAI CASTG 2 cut(s) 385, 530
TseFI GTSAC 2 cut(s) 352, 776
TseI GCWGC 5 cut(s) 460, 590, 593, 891, 940
Tsp45I GTSAC 2 cut(s) 352, 776
TspGWI ACGGA 2 cut(s) 275, 356
TspRI CASTG 2 cut(s) 385, 530
Vha464I CTTAAG 1 cut(s) 956
XhoI CTCGAG 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 3 cut(s) 491, 726, 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.