Rw6G039650

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0009883
Physical Location & Seq
Reverse (-)
63632626 .. 63635111
2486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G039650.1

Sequence Viewer

Length: 960 bp
ATGGTTCTGCTTCATCTTCCACGAAGCCACATCTCCCTCTTCACCCACTTCACCCACTTCTCAAAACCCAAACCCCCCACAAACCTAAACCCCATCTTCACCTCCACCCTCTTCTCCTCCCCCAAATCCACTCTCTCAGTCTCGGAGCCCATCCCCATCTCGCCTCTCCCAGAATCCCACATCGAACCAACCCTAGAAGAGTTCCATACCCAACTCGAAATCCCGCTCGAGAAGCTCTTCGTGCCGCCGGAGACGGAGCTCAAGTACACCGAATCCGGTGCCCTGAGCACGAGAATCTTGAAGGGGTCGAATATTTTGCTGAGCAAGTATGCTAGGGATGCTCAGGTGACTCAAGCCGAGTTTGTGAAGAGTAGTGTGAGGACTGAGGATTGCCCGGCCAATGGTCTGCCGGAGTTTGCGCTCGTCGGACGGTCAAATGTCGGCAAGTCGTCGCTGCTTAACTCGCTTGTGCGTCGGAAGAAGCTAGCTTTGACGTCCAAGAAGCCTGGGAAAACACAATGCATCAATCATTTTCGGATCAATGATAGCTGGTATTTGGTGGATTTGCCCGGCTACGGGTATGCAGCTGCACCGCAGGAACTTAGAACTGATTGGGTGAAGTTTACTAAAGATTACTTCCTGAAGAGGTCAACATTAGTTTCAGTTTTCCTTCTCATCGATGCCAGTATTCCTGCCAAAAAGATTGATCTGGAGTATGCTAGTTGGCTGGGCCAGAATCAGATCCCCATGACATTAATATTCACCAAATGTGACAAGCGGAAGAAGAAAAGACATGGAGGAAAAAGAGCAGAAGAAAATGTGAACGATTTTCAGGAGTTAATTCGTGGCTTCTTCCAGACCACACCACCATGGATTATGACCAGCAGCTTTACCAATCAGGGTCGTGATGAGATGTTATTGCATATGGCTCAGCTGCGGAATTATTGGCTTAAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

319

Amino Acids

36.4

Weight (kDa)

9.53

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 139 - 256 1.1e-18 50S ribosome-binding GTPase
FeoB_N PF02421 139 - 264 6.8e-06 Ferrous iron transport protein B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 497
AccB1I GGYRCC 1 cut(s) 278
AccBSI CCGCTC 1 cut(s) 226
AciI CCGC 5 cut(s) 224, 245, 593, 778, 937
AclWI GGATC 2 cut(s) 545, 736
AcoI YGGCCR 1 cut(s) 396
AcuI CTGAAG 1 cut(s) 662
AcyI GRCGYC 1 cut(s) 494
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 3 cut(s) 401, 575, 576
AflII CTTAAG 1 cut(s) 950
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 1 cut(s) 505
AluBI AGCT 8 cut(s) 235, 259, 484, 488, 549, 587, 888, 934
AluI AGCT 8 cut(s) 235, 259, 484, 488, 549, 587, 888, 934
Alw21I GWGCWC 2 cut(s) 261, 290
Alw26I GTCTC 2 cut(s) 145, 245
AlwI GGATC 2 cut(s) 545, 736
Ama87I CYCGRG 1 cut(s) 227
AoxI GGCC 2 cut(s) 396, 730
ApeKI GCWGC 5 cut(s) 454, 584, 587, 885, 934
AseI ATTAAT 1 cut(s) 755
Asp700I GAANNNNTTC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 421
AspS9I GGNCC 1 cut(s) 730
AsuC2I CCSGG 2 cut(s) 395, 570
AsuHPI GGTGA 6 cut(s) 34, 43, 91, 358, 628, 754
AsuNHI GCTAGC 1 cut(s) 484
AvaI CYCGRG 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 283
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 2 cut(s) 150, 261
BauI CACGAG 1 cut(s) 289
Bbv12I GWGCWC 2 cut(s) 261, 290
BbvI GCAGC 5 cut(s) 441, 574, 596, 897, 921
BccI CCATC 3 cut(s) 101, 158, 164
BcgI CGANNNNNNTGC 4 cut(s) 260, 294, 298, 332
BciT130I CCWGG 1 cut(s) 507
BcnI CCSGG 2 cut(s) 395, 570
BcoDI GTCTC 2 cut(s) 145, 245
BfaI CTAG 5 cut(s) 194, 333, 485, 720, 958
BfrI CTTAAG 1 cut(s) 950
BisI GCNGC 6 cut(s) 245, 455, 585, 588, 886, 935
BlpI GCTNAGC 2 cut(s) 320, 930
BlsI GCNGC 6 cut(s) 246, 456, 586, 589, 887, 936
Bme1390I CCNGG 3 cut(s) 395, 507, 570
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 730
BmiI GGNNCC 2 cut(s) 147, 280
BmrFI CCNGG 3 cut(s) 395, 507, 570
BmsI GCATC 3 cut(s) 328, 531, 670
BmtI GCTAGC 1 cut(s) 488
BpmI CTGGAG 1 cut(s) 731
Bpu10I CCTNAGC 2 cut(s) 284, 342
Bpu1102I GCTNAGC 2 cut(s) 320, 930
BpuEI CTTGAG 2 cut(s) 245, 336
BpuMI CCSGG 2 cut(s) 395, 570
Bsa29I ATCGAT 1 cut(s) 678
BsaHI GRCGYC 1 cut(s) 494
BsaJI CCNNGG 2 cut(s) 506, 869
BsaWI WCCGGW 1 cut(s) 275
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 3 cut(s) 401, 575, 576
Bse1I ACTGG 1 cut(s) 684
BseBI CCWGG 1 cut(s) 507
BseCI ATCGAT 1 cut(s) 678
BseDI CCNNGG 2 cut(s) 506, 869
BseGI GGATG 2 cut(s) 150, 343
BseLI CCNNNNNNNGG 3 cut(s) 401, 575, 576
BseMII CTCAG 6 cut(s) 150, 275, 311, 356, 375, 944
BseNI ACTGG 1 cut(s) 684
BseRI GAGGAG 1 cut(s) 106
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 5 cut(s) 441, 574, 596, 897, 921
BseYI CCCAGC 1 cut(s) 727
BsgI GTGCAG 1 cut(s) 573
BshFI GGCC 2 cut(s) 398, 732
BshNI GGYRCC 1 cut(s) 278
BshVI ATCGAT 1 cut(s) 678
BsiHKAI GWGCWC 2 cut(s) 261, 290
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 5 cut(s) 248, 276, 395, 410, 570
BslI CCNNNNNNNGG 3 cut(s) 401, 575, 576
BsmAI GTCTC 2 cut(s) 145, 245
BsmBI CGTCTC 1 cut(s) 245
BsnI GGCC 2 cut(s) 398, 732
BsoBI CYCGRG 1 cut(s) 227
Bsp1286I GDGCHC 4 cut(s) 150, 261, 283, 290
Bsp143I GATC 3 cut(s) 537, 706, 741
Bsp1720I GCTNAGC 2 cut(s) 320, 930
Bsp19I CCATGG 1 cut(s) 869
BspACI CCGC 5 cut(s) 224, 245, 593, 778, 937
BspANI GGCC 2 cut(s) 398, 732
BspCNI CTCAG 6 cut(s) 149, 276, 312, 355, 376, 943
BspDI ATCGAT 1 cut(s) 678
BspLI GGNNCC 2 cut(s) 147, 280
BspOI GCTAGC 1 cut(s) 488
BspPI GGATC 2 cut(s) 545, 736
BspQI GCTCTTC 1 cut(s) 242
BspT107I GGYRCC 1 cut(s) 278
BspTI CTTAAG 1 cut(s) 950
BsrBI CCGCTC 1 cut(s) 226
BsrI ACTGG 1 cut(s) 684
BssECI CCNNGG 2 cut(s) 506, 869
BssMI GATC 3 cut(s) 537, 706, 741
BssNI GRCGYC 1 cut(s) 494
BssSI CACGAG 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 869
Bst2BI CACGAG 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 507
Bst4CI ACNGT 1 cut(s) 432
Bst6I CTCTTC 6 cut(s) 44, 116, 192, 242, 362, 638
BstACI GRCGYC 1 cut(s) 494
BstAFI CTTAAG 1 cut(s) 950
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 7 cut(s) 136, 284, 320, 342, 384, 602, 930
BstDSI CCRYGG 1 cut(s) 869
BstF5I GGATG 2 cut(s) 150, 343
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 3 cut(s) 540, 709, 744
BstMAI GTCTC 2 cut(s) 145, 245
BstMBI GATC 3 cut(s) 537, 706, 741
BstMWI GCNNNNNNNGC 4 cut(s) 232, 241, 338, 463
BstNI CCWGG 1 cut(s) 507
BstSCI CCNGG 3 cut(s) 393, 505, 568
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 5 cut(s) 441, 574, 596, 897, 921
BstX2I RGATCY 1 cut(s) 741
BstYI RGATCY 1 cut(s) 741
Bsu15I ATCGAT 1 cut(s) 678
BsuRI GGCC 2 cut(s) 398, 732
BsuTUI ATCGAT 1 cut(s) 678
BtgI CCRYGG 1 cut(s) 869
BtsCI GGATG 2 cut(s) 150, 343
Cac8I GCNNGC 1 cut(s) 486
CfoI GCGC 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 730
ClaI ATCGAT 1 cut(s) 678
CseI GACGC 1 cut(s) 461
Csp6I GTAC 1 cut(s) 265
CviAII CATG 3 cut(s) 748, 794, 870
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 7 cut(s) 136, 284, 320, 342, 384, 602, 930
DpnI GATC 3 cut(s) 539, 708, 743
DpnII GATC 3 cut(s) 537, 706, 741
EaeI YGGCCR 1 cut(s) 396
Eam1104I CTCTTC 6 cut(s) 44, 116, 192, 242, 362, 638
EarI CTCTTC 6 cut(s) 44, 116, 192, 242, 362, 638
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 869
Eco24I GRGCYC 2 cut(s) 150, 261
Eco53kI GAGCTC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 662
Eco88I CYCGRG 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 869
EcoT22I ATGCAT 1 cut(s) 524
EcoT38I GRGCYC 2 cut(s) 150, 261
ErhI CCWWGG 1 cut(s) 869
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 3 cut(s) 751, 797, 873
FatI CATG 3 cut(s) 747, 793, 869
FauI CCCGC 1 cut(s) 231
FauNDI CATATG 1 cut(s) 924
Fnu4HI GCNGC 6 cut(s) 245, 455, 585, 588, 886, 935
FokI GGATG 2 cut(s) 137, 350
FriOI GRGCYC 2 cut(s) 150, 261
Fsp4HI GCNGC 6 cut(s) 245, 455, 585, 588, 886, 935
FspBI CTAG 5 cut(s) 194, 333, 485, 720, 958
GlaI GCGC 1 cut(s) 420
GluI GCNGC 6 cut(s) 245, 455, 585, 588, 886, 935
GsaI CCCAGC 1 cut(s) 731
GsuI CTGGAG 1 cut(s) 731
HaeIII GGCC 2 cut(s) 398, 732
HapII CCGG 5 cut(s) 248, 276, 395, 410, 570
HgaI GACGC 1 cut(s) 461
HhaI GCGC 1 cut(s) 421
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 3 cut(s) 751, 797, 873
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HinfI GANTC 5 cut(s) 173, 272, 294, 349, 736
HpaII CCGG 5 cut(s) 248, 276, 395, 410, 570
HphI GGTGA 6 cut(s) 34, 43, 91, 358, 628, 754
Hpy166II GTNNAC 4 cut(s) 267, 624, 651, 823
Hpy188I TCNGA 5 cut(s) 145, 428, 477, 537, 741
Hpy188III TCNNGA 7 cut(s) 229, 298, 640, 710, 833, 856, 905
Hpy8I GTNNAC 4 cut(s) 267, 624, 651, 823
Hpy99I CGWCG 3 cut(s) 428, 454, 477
HpyAV CCTTC 2 cut(s) 295, 680
HpyCH4III ACNGT 1 cut(s) 432
HpyCH4IV ACGT 1 cut(s) 494
HpyCH4V TGCA 4 cut(s) 522, 584, 590, 922
HpyF10VI GCNNNNNNNGC 4 cut(s) 232, 241, 338, 463
HpyF3I CTNAG 7 cut(s) 136, 284, 320, 342, 384, 602, 930
HpySE526I ACGT 1 cut(s) 494
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 3 cut(s) 751, 797, 873
HspAI GCGC 1 cut(s) 419
Kzo9I GATC 3 cut(s) 537, 706, 741
LguI GCTCTTC 1 cut(s) 242
LmnI GCTCC 2 cut(s) 145, 256
Lsp1109I GCAGC 5 cut(s) 441, 574, 596, 897, 921
LweI GCATC 3 cut(s) 328, 531, 670
MaeI CTAG 5 cut(s) 194, 333, 485, 720, 958
MaeII ACGT 1 cut(s) 494
MaeIII GTNAC 2 cut(s) 346, 770
MalI GATC 3 cut(s) 539, 708, 743
MbiI CCGCTC 1 cut(s) 226
MboI GATC 3 cut(s) 537, 706, 741
MflI RGATCY 1 cut(s) 741
MhlI GDGCHC 4 cut(s) 150, 261, 283, 290
MluCI AATT 2 cut(s) 840, 940
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 2 cut(s) 406, 455
MnlI CCTC 9 cut(s) 47, 112, 119, 127, 174, 372, 379, 639, 791
Mph1103I ATGCAT 1 cut(s) 524
MroXI GAANNNNTTC 1 cut(s) 236
MseI TTAA 4 cut(s) 459, 755, 839, 951
MslI CAYNNNNRTG 1 cut(s) 868
MspA1I CMGCKG 2 cut(s) 587, 934
MspCI CTTAAG 1 cut(s) 950
MspI CCGG 5 cut(s) 248, 276, 395, 410, 570
MspR9I CCNGG 3 cut(s) 395, 507, 570
MvaI CCWGG 1 cut(s) 507
MwoI GCNNNNNNNGC 4 cut(s) 232, 241, 338, 463
NciI CCSGG 2 cut(s) 395, 570
NcoI CCATGG 1 cut(s) 869
NdeI CATATG 1 cut(s) 924
NdeII GATC 3 cut(s) 537, 706, 741
NheI GCTAGC 1 cut(s) 484
NlaIII CATG 3 cut(s) 751, 797, 873
NlaIV GGNNCC 2 cut(s) 147, 280
NmeAIII GCCGAG 1 cut(s) 382
NmuCI GTSAC 2 cut(s) 346, 770
NsiI ATGCAT 1 cut(s) 524
PaeR7I CTCGAG 1 cut(s) 227
PciSI GCTCTTC 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 236
PfeI GAWTC 4 cut(s) 173, 272, 294, 736
PkrI GCNGC 6 cut(s) 246, 456, 586, 589, 887, 936
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PshBI ATTAAT 1 cut(s) 755
Psp124BI GAGCTC 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 505
PspFI CCCAGC 1 cut(s) 727
PspGI CCWGG 1 cut(s) 505
PspN4I GGNNCC 2 cut(s) 147, 280
PspPI GGNCC 1 cut(s) 730
PsuI RGATCY 1 cut(s) 741
PvuII CAGCTG 2 cut(s) 587, 934
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
RseI CAYNNNNRTG 1 cut(s) 868
SacI GAGCTC 1 cut(s) 261
SapI GCTCTTC 1 cut(s) 242
SaqAI TTAA 4 cut(s) 459, 755, 839, 951
SatI GCNGC 6 cut(s) 245, 455, 585, 588, 886, 935
Sau3AI GATC 3 cut(s) 537, 706, 741
Sau96I GGNCC 1 cut(s) 730
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 3 cut(s) 395, 507, 570
SduI GDGCHC 4 cut(s) 150, 261, 283, 290
SfaNI GCATC 3 cut(s) 328, 531, 670
Sfr274I CTCGAG 1 cut(s) 227
SlaI CTCGAG 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 868
SmlI CTYRAG 4 cut(s) 227, 260, 351, 950
SmoI CTYRAG 4 cut(s) 227, 260, 351, 950
Sse9I AATT 2 cut(s) 840, 940
SsiI CCGC 5 cut(s) 224, 245, 593, 778, 937
SspI AATATT 2 cut(s) 313, 759
SspMI CTAG 5 cut(s) 194, 333, 485, 720, 958
SstI GAGCTC 1 cut(s) 261
StyD4I CCNGG 3 cut(s) 393, 505, 568
StyI CCWWGG 1 cut(s) 869
TaaI ACNGT 1 cut(s) 432
TaiI ACGT 1 cut(s) 497
TaqI TCGA 5 cut(s) 183, 216, 228, 308, 678
TasI AATT 2 cut(s) 840, 940
TatI WGTACW 1 cut(s) 264
TauI GCSGC 1 cut(s) 247
TfiI GAWTC 4 cut(s) 173, 272, 294, 736
Tru1I TTAA 4 cut(s) 459, 755, 839, 951
Tru9I TTAA 4 cut(s) 459, 755, 839, 951
TseFI GTSAC 2 cut(s) 346, 770
TseI GCWGC 5 cut(s) 454, 584, 587, 885, 934
Tsp45I GTSAC 2 cut(s) 346, 770
TspGWI ACGGA 1 cut(s) 269
Vha464I CTTAAG 1 cut(s) 950
VspI ATTAAT 1 cut(s) 755
XhoI CTCGAG 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 236
XspI CTAG 5 cut(s) 194, 333, 485, 720, 958
ZraI GACGTC 1 cut(s) 495
Zsp2I ATGCAT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.