Rh6BG446800

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0009883
Physical Location & Seq
Forward (+)
66204762 .. 66207078
2317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG446800.1

Sequence Viewer

Length: 972 bp
ATGGTTCTGCTTCATCTTCCACGAAGCCACATCTCCCTCTTCACCCACTTCACTCACTTCTCAAAACCCAAACCCCCCACAAACCTAAACCCCATCTTCACCTCCACCCTCTTCTCCTCCCCCAAATCCACTCTCTCAGTCTCGGAGCCCATCCCCATCCCCATCCCCATCTCGCCTCTCCCAGAATCCCACATCGAACCAACCCTAGAAGAGTTCCATACCCAACTCGAAATCCCGCTCGAGAAGCTCTTCGTGCCGCCGGAGACCGAGCTCAAGTACACCGAATCCGGTGCCCTGAGCACGAGAATCTTGAAGGGGTCGAATATTTTGCTGAGCAAGTATGCTAGGGATGCTCAGGTGACTCAAGCCGAGTTTGTGAAGAGTAGTGTGAGGACTGAGGATTGCCCGGCCAATGGTCTGCCGGAGTTTGCTCTCGTCGGACGGTCAAATGTCGGCAAGTCGTCGCTGCTTAACTCGCTTGTGCGTCGGAAGAAGCTAGCTTTGACGTCCAAGAAGCCTGGGAAAACACAATGCATCAATCATTTTCGGATCAATGATAGCTGGTATTTGGTGGATTTGCCCGGCTACGGGTATGCAGCTGCACCGCAGGAACTTAGAACTGATTGGGTGAAGTTTACTAAAGACTACTTCCTGAATAGGTCAACATTAGTTTCAGTTTTCCTTCTCATCGATGCCAGTATTCCTGCCAAAAAGATTGATCTGGAGTATGCTAGTTGGCTGGGCCAGAATCAGATCCCCATGACATTAATATTCACCAAATGTGACAAGCGGAAGAAGAAAAGACATGGAGGAAAAAGAGCAGAAGAAAATGTGAACGATTTTCAGGAGTTAATTCGTGGCTTCTTCCAGACAACACCACCATGGATTATGACCAGCAGCTTTACCAATCAGGGTCGTGATGAGATGTTATTGCATATGGCTCAGCTGCGGAATTATTGGCTTAAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

323

Amino Acids

36.81

Weight (kDa)

9.48

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 143 - 260 9.7e-19 50S ribosome-binding GTPase
FeoB_N PF02421 143 - 268 6.8e-06 Ferrous iron transport protein B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 290
AccBSI CCGCTC 1 cut(s) 238
AciI CCGC 5 cut(s) 236, 257, 605, 790, 949
AclWI GGATC 2 cut(s) 557, 748
AcoI YGGCCR 1 cut(s) 408
AcyI GRCGYC 1 cut(s) 506
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 3 cut(s) 413, 587, 588
AflII CTTAAG 1 cut(s) 962
AgsI TTSAA 1 cut(s) 313
AjnI CCWGG 1 cut(s) 517
AluBI AGCT 8 cut(s) 247, 271, 496, 500, 561, 599, 900, 946
AluI AGCT 8 cut(s) 247, 271, 496, 500, 561, 599, 900, 946
Alw21I GWGCWC 2 cut(s) 273, 302
Alw26I GTCTC 2 cut(s) 145, 257
AlwI GGATC 2 cut(s) 557, 748
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 2 cut(s) 408, 742
ApeKI GCWGC 5 cut(s) 466, 596, 599, 897, 946
AseI ATTAAT 1 cut(s) 767
Asp700I GAANNNNTTC 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 742
AsuC2I CCSGG 2 cut(s) 407, 582
AsuHPI GGTGA 5 cut(s) 34, 91, 370, 640, 766
AsuNHI GCTAGC 1 cut(s) 496
AvaI CYCGRG 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 295
BanI GGYRCC 1 cut(s) 290
BanII GRGCYC 2 cut(s) 150, 273
BauI CACGAG 1 cut(s) 301
Bbv12I GWGCWC 2 cut(s) 273, 302
BbvI GCAGC 5 cut(s) 453, 586, 608, 909, 933
BccI CCATC 5 cut(s) 101, 158, 164, 170, 176
BcgI CGANNNNNNTGC 4 cut(s) 272, 306, 310, 344
BciT130I CCWGG 1 cut(s) 519
BcnI CCSGG 2 cut(s) 407, 582
BcoDI GTCTC 2 cut(s) 145, 257
BfaI CTAG 5 cut(s) 206, 345, 497, 732, 970
BfrI CTTAAG 1 cut(s) 962
BisI GCNGC 6 cut(s) 257, 467, 597, 600, 898, 947
BlpI GCTNAGC 2 cut(s) 332, 942
BlsI GCNGC 6 cut(s) 258, 468, 598, 601, 899, 948
Bme1390I CCNGG 3 cut(s) 407, 519, 582
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 742
BmiI GGNNCC 2 cut(s) 147, 292
BmrFI CCNGG 3 cut(s) 407, 519, 582
BmsI GCATC 3 cut(s) 340, 543, 682
BmtI GCTAGC 1 cut(s) 500
BpmI CTGGAG 1 cut(s) 743
Bpu10I CCTNAGC 2 cut(s) 296, 354
Bpu1102I GCTNAGC 2 cut(s) 332, 942
BpuEI CTTGAG 2 cut(s) 257, 348
BpuMI CCSGG 2 cut(s) 407, 582
Bsa29I ATCGAT 1 cut(s) 690
BsaHI GRCGYC 1 cut(s) 506
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 518, 881
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 3 cut(s) 413, 587, 588
Bse1I ACTGG 1 cut(s) 696
BseBI CCWGG 1 cut(s) 519
BseCI ATCGAT 1 cut(s) 690
BseDI CCNNGG 2 cut(s) 518, 881
BseGI GGATG 4 cut(s) 150, 156, 162, 355
BseLI CCNNNNNNNGG 3 cut(s) 413, 587, 588
BseMII CTCAG 6 cut(s) 150, 287, 323, 368, 387, 956
BseNI ACTGG 1 cut(s) 696
BseRI GAGGAG 1 cut(s) 106
BseSI GKGCMC 1 cut(s) 295
BseXI GCAGC 5 cut(s) 453, 586, 608, 909, 933
BseYI CCCAGC 1 cut(s) 739
BsgI GTGCAG 1 cut(s) 585
BshFI GGCC 2 cut(s) 410, 744
BshNI GGYRCC 1 cut(s) 290
BshVI ATCGAT 1 cut(s) 690
BsiHKAI GWGCWC 2 cut(s) 273, 302
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 5 cut(s) 260, 288, 407, 422, 582
BslI CCNNNNNNNGG 3 cut(s) 413, 587, 588
BsmAI GTCTC 2 cut(s) 145, 257
BsnI GGCC 2 cut(s) 410, 744
Bso31I GGTCTC 1 cut(s) 257
BsoBI CYCGRG 1 cut(s) 239
Bsp1286I GDGCHC 4 cut(s) 150, 273, 295, 302
Bsp143I GATC 3 cut(s) 549, 718, 753
Bsp1720I GCTNAGC 2 cut(s) 332, 942
Bsp19I CCATGG 1 cut(s) 881
BspACI CCGC 5 cut(s) 236, 257, 605, 790, 949
BspANI GGCC 2 cut(s) 410, 744
BspCNI CTCAG 6 cut(s) 149, 288, 324, 367, 388, 955
BspDI ATCGAT 1 cut(s) 690
BspLI GGNNCC 2 cut(s) 147, 292
BspOI GCTAGC 1 cut(s) 500
BspPI GGATC 2 cut(s) 557, 748
BspQI GCTCTTC 1 cut(s) 254
BspT107I GGYRCC 1 cut(s) 290
BspTI CTTAAG 1 cut(s) 962
BspTNI GGTCTC 1 cut(s) 257
BsrBI CCGCTC 1 cut(s) 238
BsrI ACTGG 1 cut(s) 696
BssECI CCNNGG 2 cut(s) 518, 881
BssMI GATC 3 cut(s) 549, 718, 753
BssNI GRCGYC 1 cut(s) 506
BssSI CACGAG 1 cut(s) 301
BssT1I CCWWGG 1 cut(s) 881
Bst2BI CACGAG 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 1 cut(s) 444
Bst6I CTCTTC 5 cut(s) 44, 116, 204, 254, 374
BstACI GRCGYC 1 cut(s) 506
BstAFI CTTAAG 1 cut(s) 962
BstC8I GCNNGC 1 cut(s) 498
BstDEI CTNAG 7 cut(s) 136, 296, 332, 354, 396, 614, 942
BstDSI CCRYGG 1 cut(s) 881
BstF5I GGATG 4 cut(s) 150, 156, 162, 355
BstKTI GATC 3 cut(s) 552, 721, 756
BstMAI GTCTC 2 cut(s) 145, 257
BstMBI GATC 3 cut(s) 549, 718, 753
BstMWI GCNNNNNNNGC 4 cut(s) 244, 253, 350, 475
BstNI CCWGG 1 cut(s) 519
BstSCI CCNGG 3 cut(s) 405, 517, 580
BstSLI GKGCMC 1 cut(s) 295
BstV1I GCAGC 5 cut(s) 453, 586, 608, 909, 933
BstX2I RGATCY 1 cut(s) 753
BstYI RGATCY 1 cut(s) 753
Bsu15I ATCGAT 1 cut(s) 690
BsuRI GGCC 2 cut(s) 410, 744
BsuTUI ATCGAT 1 cut(s) 690
BtgI CCRYGG 1 cut(s) 881
BtsCI GGATG 4 cut(s) 150, 156, 162, 355
Cac8I GCNNGC 1 cut(s) 498
Cfr13I GGNCC 1 cut(s) 742
ClaI ATCGAT 1 cut(s) 690
CseI GACGC 1 cut(s) 473
Csp6I GTAC 1 cut(s) 277
CviAII CATG 3 cut(s) 760, 806, 882
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 7 cut(s) 136, 296, 332, 354, 396, 614, 942
DpnI GATC 3 cut(s) 551, 720, 755
DpnII GATC 3 cut(s) 549, 718, 753
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 5 cut(s) 44, 116, 204, 254, 374
EarI CTCTTC 5 cut(s) 44, 116, 204, 254, 374
Ecl136II GAGCTC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 881
Eco24I GRGCYC 2 cut(s) 150, 273
Eco31I GGTCTC 1 cut(s) 257
Eco53kI GAGCTC 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 881
EcoT22I ATGCAT 1 cut(s) 536
EcoT38I GRGCYC 2 cut(s) 150, 273
ErhI CCWWGG 1 cut(s) 881
FaeI CATG 3 cut(s) 763, 809, 885
FatI CATG 3 cut(s) 759, 805, 881
FauI CCCGC 1 cut(s) 243
FauNDI CATATG 1 cut(s) 936
Fnu4HI GCNGC 6 cut(s) 257, 467, 597, 600, 898, 947
FokI GGATG 4 cut(s) 137, 143, 149, 362
FriOI GRGCYC 2 cut(s) 150, 273
Fsp4HI GCNGC 6 cut(s) 257, 467, 597, 600, 898, 947
FspBI CTAG 5 cut(s) 206, 345, 497, 732, 970
GluI GCNGC 6 cut(s) 257, 467, 597, 600, 898, 947
GsaI CCCAGC 1 cut(s) 743
GsuI CTGGAG 1 cut(s) 743
HaeIII GGCC 2 cut(s) 410, 744
HapII CCGG 5 cut(s) 260, 288, 407, 422, 582
HgaI GACGC 1 cut(s) 473
Hin1I GRCGYC 1 cut(s) 506
Hin1II CATG 3 cut(s) 763, 809, 885
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HinfI GANTC 5 cut(s) 185, 284, 306, 361, 748
HpaII CCGG 5 cut(s) 260, 288, 407, 422, 582
HphI GGTGA 5 cut(s) 34, 91, 370, 640, 766
Hpy166II GTNNAC 4 cut(s) 279, 636, 663, 835
Hpy188I TCNGA 5 cut(s) 145, 440, 489, 549, 753
Hpy188III TCNNGA 7 cut(s) 241, 310, 652, 722, 845, 868, 917
Hpy8I GTNNAC 4 cut(s) 279, 636, 663, 835
Hpy99I CGWCG 3 cut(s) 440, 466, 489
HpyAV CCTTC 2 cut(s) 307, 692
HpyCH4III ACNGT 1 cut(s) 444
HpyCH4IV ACGT 1 cut(s) 506
HpyCH4V TGCA 4 cut(s) 534, 596, 602, 934
HpyF10VI GCNNNNNNNGC 4 cut(s) 244, 253, 350, 475
HpyF3I CTNAG 7 cut(s) 136, 296, 332, 354, 396, 614, 942
HpySE526I ACGT 1 cut(s) 506
Hsp92I GRCGYC 1 cut(s) 506
Hsp92II CATG 3 cut(s) 763, 809, 885
Kzo9I GATC 3 cut(s) 549, 718, 753
LguI GCTCTTC 1 cut(s) 254
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 5 cut(s) 453, 586, 608, 909, 933
LweI GCATC 3 cut(s) 340, 543, 682
MaeI CTAG 5 cut(s) 206, 345, 497, 732, 970
MaeII ACGT 1 cut(s) 506
MaeIII GTNAC 2 cut(s) 358, 782
MalI GATC 3 cut(s) 551, 720, 755
MbiI CCGCTC 1 cut(s) 238
MboI GATC 3 cut(s) 549, 718, 753
MflI RGATCY 1 cut(s) 753
MhlI GDGCHC 4 cut(s) 150, 273, 295, 302
MluCI AATT 2 cut(s) 852, 952
MlyI GAGTC 1 cut(s) 355
MmeI TCCRAC 2 cut(s) 418, 467
MnlI CCTC 8 cut(s) 47, 112, 119, 127, 186, 384, 391, 803
Mph1103I ATGCAT 1 cut(s) 536
MroXI GAANNNNTTC 1 cut(s) 248
MseI TTAA 4 cut(s) 471, 767, 851, 963
MslI CAYNNNNRTG 1 cut(s) 880
MspA1I CMGCKG 2 cut(s) 599, 946
MspCI CTTAAG 1 cut(s) 962
MspI CCGG 5 cut(s) 260, 288, 407, 422, 582
MspR9I CCNGG 3 cut(s) 407, 519, 582
MvaI CCWGG 1 cut(s) 519
MwoI GCNNNNNNNGC 4 cut(s) 244, 253, 350, 475
NciI CCSGG 2 cut(s) 407, 582
NcoI CCATGG 1 cut(s) 881
NdeI CATATG 1 cut(s) 936
NdeII GATC 3 cut(s) 549, 718, 753
NheI GCTAGC 1 cut(s) 496
NlaIII CATG 3 cut(s) 763, 809, 885
NlaIV GGNNCC 2 cut(s) 147, 292
NmeAIII GCCGAG 1 cut(s) 394
NmuCI GTSAC 2 cut(s) 358, 782
NsiI ATGCAT 1 cut(s) 536
PaeR7I CTCGAG 1 cut(s) 239
PciSI GCTCTTC 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 4 cut(s) 185, 284, 306, 748
PkrI GCNGC 6 cut(s) 258, 468, 598, 601, 899, 948
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
PshBI ATTAAT 1 cut(s) 767
Psp124BI GAGCTC 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 517
PspFI CCCAGC 1 cut(s) 739
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 2 cut(s) 147, 292
PspPI GGNCC 1 cut(s) 742
PsuI RGATCY 1 cut(s) 753
PvuII CAGCTG 2 cut(s) 599, 946
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 880
SacI GAGCTC 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 254
SaqAI TTAA 4 cut(s) 471, 767, 851, 963
SatI GCNGC 6 cut(s) 257, 467, 597, 600, 898, 947
Sau3AI GATC 3 cut(s) 549, 718, 753
Sau96I GGNCC 1 cut(s) 742
SchI GAGTC 1 cut(s) 355
ScrFI CCNGG 3 cut(s) 407, 519, 582
SduI GDGCHC 4 cut(s) 150, 273, 295, 302
SfaNI GCATC 3 cut(s) 340, 543, 682
Sfr274I CTCGAG 1 cut(s) 239
SlaI CTCGAG 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 880
SmlI CTYRAG 4 cut(s) 239, 272, 363, 962
SmoI CTYRAG 4 cut(s) 239, 272, 363, 962
Sse9I AATT 2 cut(s) 852, 952
SsiI CCGC 5 cut(s) 236, 257, 605, 790, 949
SspI AATATT 2 cut(s) 325, 771
SspMI CTAG 5 cut(s) 206, 345, 497, 732, 970
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 3 cut(s) 405, 517, 580
StyI CCWWGG 1 cut(s) 881
TaaI ACNGT 1 cut(s) 444
TaiI ACGT 1 cut(s) 509
TaqI TCGA 5 cut(s) 195, 228, 240, 320, 690
TaqII GACCGA 1 cut(s) 281
TasI AATT 2 cut(s) 852, 952
TatI WGTACW 1 cut(s) 276
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 4 cut(s) 185, 284, 306, 748
Tru1I TTAA 4 cut(s) 471, 767, 851, 963
Tru9I TTAA 4 cut(s) 471, 767, 851, 963
TseFI GTSAC 2 cut(s) 358, 782
TseI GCWGC 5 cut(s) 466, 596, 599, 897, 946
Tsp45I GTSAC 2 cut(s) 358, 782
Vha464I CTTAAG 1 cut(s) 962
VspI ATTAAT 1 cut(s) 767
XhoI CTCGAG 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 5 cut(s) 206, 345, 497, 732, 970
ZraI GACGTC 1 cut(s) 507
Zsp2I ATGCAT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.