Rorug06G0343000

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009883
Physical Location & Seq
Reverse (-)
49387498 .. 49388220
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0343000.1

Sequence Viewer

Length: 309 bp
ATGGAGAAGGTTTTAAGATTGGCATCGGCGAATGATGTGGTGATTTTTAGCAAGAGCTCATGTTGCCTGTGCTATGCAGTCAACATTCTATTTCAGGAGATTGGTGTGCGCCCTTCACTTAATGAGCTCGACAATGACCCTGACGGCAGGGAAATGGAGAAGTGTCTTATGAGGATGGGGTGCTCTGCAGTTCCAGCTGTGTTCATAGGTGGAACACTGATCGGATCAACCAATGAAGTCATGTCCCTCCACCTAAAAGGCCAACTGATCCCAAAACTGAAGTCTTATGAGCAAAACGCTACGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

102

Amino Acids

11.14

Weight (kDa)

5.74

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 74 9.5e-10 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 232, 262
AcuI CTGAAG 1 cut(s) 299
AluBI AGCT 3 cut(s) 57, 127, 197
AluI AGCT 3 cut(s) 57, 127, 197
Alw21I GWGCWC 3 cut(s) 59, 129, 185
AlwI GGATC 2 cut(s) 232, 262
AoxI GGCC 1 cut(s) 259
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AspLEI GCGC 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 52
BanII GRGCYC 2 cut(s) 59, 129
Bbv12I GWGCWC 3 cut(s) 59, 129, 185
BccI CCATC 1 cut(s) 169
BceAI ACGGC 1 cut(s) 160
BfmI CTRYAG 1 cut(s) 186
BmsI GCATC 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 22
Bse8I GATNNNNATC 1 cut(s) 22
BseGI GGATG 1 cut(s) 180
BseJI GATNNNNATC 1 cut(s) 22
BshFI GGCC 1 cut(s) 261
BsiHKAI GWGCWC 3 cut(s) 59, 129, 185
BslFI GGGAC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 1 cut(s) 261
Bsp1286I GDGCHC 3 cut(s) 59, 129, 185
Bsp143I GATC 3 cut(s) 219, 224, 267
BspANI GGCC 1 cut(s) 261
BspMAI CTGCAG 1 cut(s) 190
BspPI GGATC 2 cut(s) 232, 262
BssMI GATC 3 cut(s) 219, 224, 267
BstF5I GGATG 1 cut(s) 180
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 3 cut(s) 222, 227, 270
BstMBI GATC 3 cut(s) 219, 224, 267
BstMWI GCNNNNNNNGC 2 cut(s) 63, 194
BstSFI CTRYAG 1 cut(s) 186
BsuRI GGCC 1 cut(s) 261
BtsCI GGATG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 215
CfoI GCGC 1 cut(s) 111
CviAII CATG 2 cut(s) 60, 241
CviJI RGCY 4 cut(s) 57, 127, 197, 261
CviKI_1 RGCY 4 cut(s) 57, 127, 197, 261
DpnI GATC 3 cut(s) 221, 226, 269
DpnII GATC 3 cut(s) 219, 224, 267
Ecl136II GAGCTC 2 cut(s) 57, 127
Eco24I GRGCYC 2 cut(s) 59, 129
Eco53kI GAGCTC 2 cut(s) 57, 127
Eco57I CTGAAG 1 cut(s) 299
EcoICRI GAGCTC 2 cut(s) 57, 127
EcoT38I GRGCYC 2 cut(s) 59, 129
FaeI CATG 2 cut(s) 63, 244
FaiI YATR 6 cut(s) 61, 75, 170, 206, 242, 288
FaqI GGGAC 1 cut(s) 229
FatI CATG 2 cut(s) 59, 240
FokI GGATG 1 cut(s) 187
FriOI GRGCYC 2 cut(s) 59, 129
GlaI GCGC 1 cut(s) 110
HaeIII GGCC 1 cut(s) 261
HhaI GCGC 1 cut(s) 111
Hin1II CATG 2 cut(s) 63, 244
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 224
Hpy188III TCNNGA 2 cut(s) 95, 306
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 123
HpyCH4IV ACGT 1 cut(s) 302
HpyCH4V TGCA 2 cut(s) 77, 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 194
HpySE526I ACGT 1 cut(s) 302
Hsp92II CATG 2 cut(s) 63, 244
HspAI GCGC 1 cut(s) 109
Kzo9I GATC 3 cut(s) 219, 224, 267
LpnPI CCDG 5 cut(s) 80, 80, 133, 153, 207
LweI GCATC 1 cut(s) 32
MaeII ACGT 1 cut(s) 302
MalI GATC 3 cut(s) 221, 226, 269
MboI GATC 3 cut(s) 219, 224, 267
MhlI GDGCHC 3 cut(s) 59, 129, 185
MnlI CCTC 2 cut(s) 165, 257
MseI TTAA 2 cut(s) 14, 120
MspA1I CMGCKG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 63, 194
NdeII GATC 3 cut(s) 219, 224, 267
NlaIII CATG 2 cut(s) 63, 244
Psp124BI GAGCTC 2 cut(s) 59, 129
PstI CTGCAG 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 197
SacI GAGCTC 2 cut(s) 59, 129
SaqAI TTAA 2 cut(s) 14, 120
Sau3AI GATC 3 cut(s) 219, 224, 267
SduI GDGCHC 3 cut(s) 59, 129, 185
SetI ASST 7 cut(s) 12, 59, 129, 199, 211, 255, 305
SfaNI GCATC 1 cut(s) 32
SfcI CTRYAG 1 cut(s) 186
SgeI CNNG 9 cut(s) 64, 72, 79, 107, 140, 152, 160, 206, 253
SstI GAGCTC 2 cut(s) 59, 129
TaiI ACGT 1 cut(s) 305
TaqI TCGA 1 cut(s) 129
Tru1I TTAA 2 cut(s) 14, 120
Tru9I TTAA 2 cut(s) 14, 120
TscAI CASTG 1 cut(s) 222
TspDTI ATGAA 2 cut(s) 193, 249
TspRI CASTG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.