Rmu_co8494563.1_g000001

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8494563.1
OG0009883
Physical Location & Seq
Forward (+)
588 .. 2479
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8494563.1_g000001.1.cds

Sequence Viewer

Length: 963 bp
atggttctgcttcatcatcttccacgaagccacatctccctcttcacccacttcactcacttgtcaaaacccaaacccccctcaaacctaaaccccatcttcacctccaccctcttctcctcccccaaatccactctctcagtctcggagcccatccccatctcgcctctcccagaatcccacatcgaaccaaccctagaagagttccatacccaactcgaaatcccgctcgagaagctcttcgtgccgccggagaccgagctcaagtacaccgaatccggtgccctgagcacgagaatcttgaaggggtcgaatattttgctgagcaagtatgctagggatgctcaggtgactcaagccgagtttgtgaagagtagtgtgaggactgaggattgcccggccaatggtctgccggagtttgcgctcgtcggacggtcaaatgtcggcaagtcgtcgctgcttaactcgcttgtgcgtcggaagaagctagctttgacgtccaagaagcctgggaaaacacaatgcatcaatcattttcggatcaatgatagctggtatttggtggatttgcccggctacgggtatgcagctgcaccgcaggaacttagaactgattgggtgaaatttactaaagactacttcctgaataggtcaacattagtttcagttttccttctcatcgatgccagtattcctgccaaaaagattgatctggagtatgctagttggctgggccagaatcagatccccatgacattaatattcaccaaatgtgacaagcggaagaagaaaagacatggaggaaaaagagcagaagaaaatgtgaacgattttcaggagttaattcgtggcttcttccagaccacaccaccatggattatgaccagcagctttaccaatcagggtcgtgatgagatgttattgcatatggctcagctgcggaattattggcttaagcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

320

Amino Acids

36.48

Weight (kDa)

9.48

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 500
AccB1I GGYRCC 1 cut(s) 281
AccBSI CCGCTC 1 cut(s) 229
AciI CCGC 5 cut(s) 227, 248, 596, 781, 940
AclWI GGATC 2 cut(s) 548, 739
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 1 cut(s) 623
AcyI GRCGYC 1 cut(s) 497
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 3 cut(s) 404, 578, 579
AflII CTTAAG 1 cut(s) 953
AgsI TTSAA 1 cut(s) 304
AjnI CCWGG 1 cut(s) 508
AluBI AGCT 8 cut(s) 238, 262, 487, 491, 552, 590, 891, 937
AluI AGCT 8 cut(s) 238, 262, 487, 491, 552, 590, 891, 937
Alw21I GWGCWC 2 cut(s) 264, 293
Alw26I GTCTC 2 cut(s) 148, 248
AlwI GGATC 2 cut(s) 548, 739
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 2 cut(s) 399, 733
ApeKI GCWGC 5 cut(s) 457, 587, 590, 888, 937
ApoI RAATTY 1 cut(s) 623
AseI ATTAAT 1 cut(s) 758
Asp700I GAANNNNTTC 1 cut(s) 239
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 1 cut(s) 733
AsuC2I CCSGG 2 cut(s) 398, 573
AsuHPI GGTGA 5 cut(s) 37, 94, 361, 631, 757
AsuNHI GCTAGC 1 cut(s) 487
AvaI CYCGRG 1 cut(s) 230
BaeGI GKGCMC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 281
BanII GRGCYC 2 cut(s) 153, 264
BauI CACGAG 1 cut(s) 292
Bbv12I GWGCWC 2 cut(s) 264, 293
BbvI GCAGC 5 cut(s) 444, 577, 599, 900, 924
BccI CCATC 3 cut(s) 104, 161, 167
BcgI CGANNNNNNTGC 4 cut(s) 263, 297, 301, 335
BciT130I CCWGG 1 cut(s) 510
BcnI CCSGG 2 cut(s) 398, 573
BcoDI GTCTC 2 cut(s) 148, 248
BfaI CTAG 5 cut(s) 197, 336, 488, 723, 961
BfrI CTTAAG 1 cut(s) 953
BisI GCNGC 6 cut(s) 248, 458, 588, 591, 889, 938
BlpI GCTNAGC 2 cut(s) 323, 933
BlsI GCNGC 6 cut(s) 249, 459, 589, 592, 890, 939
Bme1390I CCNGG 3 cut(s) 398, 510, 573
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 733
BmiI GGNNCC 2 cut(s) 150, 283
BmrFI CCNGG 3 cut(s) 398, 510, 573
BmsI GCATC 3 cut(s) 331, 534, 673
BmtI GCTAGC 1 cut(s) 491
BpmI CTGGAG 1 cut(s) 734
Bpu10I CCTNAGC 2 cut(s) 287, 345
Bpu1102I GCTNAGC 2 cut(s) 323, 933
BpuEI CTTGAG 2 cut(s) 248, 339
BpuMI CCSGG 2 cut(s) 398, 573
Bsa29I ATCGAT 1 cut(s) 681
BsaHI GRCGYC 1 cut(s) 497
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 2 cut(s) 509, 872
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 3 cut(s) 404, 578, 579
Bse1I ACTGG 1 cut(s) 687
BseBI CCWGG 1 cut(s) 510
BseCI ATCGAT 1 cut(s) 681
BseDI CCNNGG 2 cut(s) 509, 872
BseGI GGATG 2 cut(s) 153, 346
BseLI CCNNNNNNNGG 3 cut(s) 404, 578, 579
BseMII CTCAG 6 cut(s) 153, 278, 314, 359, 378, 947
BseNI ACTGG 1 cut(s) 687
BseRI GAGGAG 1 cut(s) 109
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 5 cut(s) 444, 577, 599, 900, 924
BseYI CCCAGC 1 cut(s) 730
BsgI GTGCAG 1 cut(s) 576
BshFI GGCC 2 cut(s) 401, 735
BshNI GGYRCC 1 cut(s) 281
BshVI ATCGAT 1 cut(s) 681
BsiHKAI GWGCWC 2 cut(s) 264, 293
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 5 cut(s) 251, 279, 398, 413, 573
BslI CCNNNNNNNGG 3 cut(s) 404, 578, 579
BsmAI GTCTC 2 cut(s) 148, 248
BsnI GGCC 2 cut(s) 401, 735
Bso31I GGTCTC 1 cut(s) 248
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 4 cut(s) 153, 264, 286, 293
Bsp143I GATC 3 cut(s) 540, 709, 744
Bsp1720I GCTNAGC 2 cut(s) 323, 933
Bsp19I CCATGG 1 cut(s) 872
BspACI CCGC 5 cut(s) 227, 248, 596, 781, 940
BspANI GGCC 2 cut(s) 401, 735
BspCNI CTCAG 6 cut(s) 152, 279, 315, 358, 379, 946
BspDI ATCGAT 1 cut(s) 681
BspLI GGNNCC 2 cut(s) 150, 283
BspOI GCTAGC 1 cut(s) 491
BspPI GGATC 2 cut(s) 548, 739
BspQI GCTCTTC 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 281
BspTI CTTAAG 1 cut(s) 953
BspTNI GGTCTC 1 cut(s) 248
BsrBI CCGCTC 1 cut(s) 229
BsrI ACTGG 1 cut(s) 687
BssECI CCNNGG 2 cut(s) 509, 872
BssMI GATC 3 cut(s) 540, 709, 744
BssNI GRCGYC 1 cut(s) 497
BssSI CACGAG 1 cut(s) 292
BssT1I CCWWGG 1 cut(s) 872
Bst2BI CACGAG 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 1 cut(s) 435
Bst6I CTCTTC 5 cut(s) 47, 119, 195, 245, 365
BstACI GRCGYC 1 cut(s) 497
BstAFI CTTAAG 1 cut(s) 953
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 7 cut(s) 139, 287, 323, 345, 387, 605, 933
BstDSI CCRYGG 1 cut(s) 872
BstF5I GGATG 2 cut(s) 153, 346
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 3 cut(s) 543, 712, 747
BstMAI GTCTC 2 cut(s) 148, 248
BstMBI GATC 3 cut(s) 540, 709, 744
BstMWI GCNNNNNNNGC 4 cut(s) 235, 244, 341, 466
BstNI CCWGG 1 cut(s) 510
BstSCI CCNGG 3 cut(s) 396, 508, 571
BstSLI GKGCMC 1 cut(s) 286
BstV1I GCAGC 5 cut(s) 444, 577, 599, 900, 924
BstX2I RGATCY 1 cut(s) 744
BstYI RGATCY 1 cut(s) 744
Bsu15I ATCGAT 1 cut(s) 681
BsuRI GGCC 2 cut(s) 401, 735
BsuTUI ATCGAT 1 cut(s) 681
BtgI CCRYGG 1 cut(s) 872
BtsCI GGATG 2 cut(s) 153, 346
Cac8I GCNNGC 1 cut(s) 489
CfoI GCGC 1 cut(s) 424
Cfr13I GGNCC 1 cut(s) 733
ClaI ATCGAT 1 cut(s) 681
CseI GACGC 1 cut(s) 464
Csp6I GTAC 1 cut(s) 268
CviAII CATG 3 cut(s) 751, 797, 873
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 7 cut(s) 139, 287, 323, 345, 387, 605, 933
DpnI GATC 3 cut(s) 542, 711, 746
DpnII GATC 3 cut(s) 540, 709, 744
EaeI YGGCCR 1 cut(s) 399
Eam1104I CTCTTC 5 cut(s) 47, 119, 195, 245, 365
EarI CTCTTC 5 cut(s) 47, 119, 195, 245, 365
Ecl136II GAGCTC 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 872
Eco24I GRGCYC 2 cut(s) 153, 264
Eco31I GGTCTC 1 cut(s) 248
Eco53kI GAGCTC 1 cut(s) 262
Eco88I CYCGRG 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 872
EcoT22I ATGCAT 1 cut(s) 527
EcoT38I GRGCYC 2 cut(s) 153, 264
ErhI CCWWGG 1 cut(s) 872
FaeI CATG 3 cut(s) 754, 800, 876
FatI CATG 3 cut(s) 750, 796, 872
FauI CCCGC 1 cut(s) 234
FauNDI CATATG 1 cut(s) 927
Fnu4HI GCNGC 6 cut(s) 248, 458, 588, 591, 889, 938
FokI GGATG 2 cut(s) 140, 353
FriOI GRGCYC 2 cut(s) 153, 264
Fsp4HI GCNGC 6 cut(s) 248, 458, 588, 591, 889, 938
FspBI CTAG 5 cut(s) 197, 336, 488, 723, 961
GlaI GCGC 1 cut(s) 423
GluI GCNGC 6 cut(s) 248, 458, 588, 591, 889, 938
GsaI CCCAGC 1 cut(s) 734
GsuI CTGGAG 1 cut(s) 734
HaeIII GGCC 2 cut(s) 401, 735
HapII CCGG 5 cut(s) 251, 279, 398, 413, 573
HgaI GACGC 1 cut(s) 464
HhaI GCGC 1 cut(s) 424
Hin1I GRCGYC 1 cut(s) 497
Hin1II CATG 3 cut(s) 754, 800, 876
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HincII GTYRAC 1 cut(s) 654
HindII GTYRAC 1 cut(s) 654
HinfI GANTC 5 cut(s) 176, 275, 297, 352, 739
HpaII CCGG 5 cut(s) 251, 279, 398, 413, 573
HphI GGTGA 5 cut(s) 37, 94, 361, 631, 757
Hpy166II GTNNAC 3 cut(s) 270, 654, 826
Hpy188I TCNGA 5 cut(s) 148, 431, 480, 540, 744
Hpy188III TCNNGA 7 cut(s) 232, 301, 643, 713, 836, 859, 908
Hpy8I GTNNAC 3 cut(s) 270, 654, 826
Hpy99I CGWCG 3 cut(s) 431, 457, 480
HpyAV CCTTC 2 cut(s) 298, 683
HpyCH4III ACNGT 1 cut(s) 435
HpyCH4IV ACGT 1 cut(s) 497
HpyCH4V TGCA 4 cut(s) 525, 587, 593, 925
HpyF10VI GCNNNNNNNGC 4 cut(s) 235, 244, 341, 466
HpyF3I CTNAG 7 cut(s) 139, 287, 323, 345, 387, 605, 933
HpySE526I ACGT 1 cut(s) 497
Hsp92I GRCGYC 1 cut(s) 497
Hsp92II CATG 3 cut(s) 754, 800, 876
HspAI GCGC 1 cut(s) 422
Kzo9I GATC 3 cut(s) 540, 709, 744
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 1 cut(s) 148
Lsp1109I GCAGC 5 cut(s) 444, 577, 599, 900, 924
LweI GCATC 3 cut(s) 331, 534, 673
MaeI CTAG 5 cut(s) 197, 336, 488, 723, 961
MaeII ACGT 1 cut(s) 497
MaeIII GTNAC 2 cut(s) 349, 773
MalI GATC 3 cut(s) 542, 711, 746
MbiI CCGCTC 1 cut(s) 229
MboI GATC 3 cut(s) 540, 709, 744
MflI RGATCY 1 cut(s) 744
MhlI GDGCHC 4 cut(s) 153, 264, 286, 293
MluCI AATT 3 cut(s) 623, 843, 943
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 2 cut(s) 409, 458
MnlI CCTC 9 cut(s) 50, 91, 115, 122, 130, 177, 375, 382, 794
Mph1103I ATGCAT 1 cut(s) 527
MroXI GAANNNNTTC 1 cut(s) 239
MseI TTAA 4 cut(s) 462, 758, 842, 954
MslI CAYNNNNRTG 1 cut(s) 871
MspA1I CMGCKG 2 cut(s) 590, 937
MspCI CTTAAG 1 cut(s) 953
MspI CCGG 5 cut(s) 251, 279, 398, 413, 573
MspR9I CCNGG 3 cut(s) 398, 510, 573
MvaI CCWGG 1 cut(s) 510
MwoI GCNNNNNNNGC 4 cut(s) 235, 244, 341, 466
NciI CCSGG 2 cut(s) 398, 573
NcoI CCATGG 1 cut(s) 872
NdeI CATATG 1 cut(s) 927
NdeII GATC 3 cut(s) 540, 709, 744
NheI GCTAGC 1 cut(s) 487
NlaIII CATG 3 cut(s) 754, 800, 876
NlaIV GGNNCC 2 cut(s) 150, 283
NmeAIII GCCGAG 1 cut(s) 385
NmuCI GTSAC 2 cut(s) 349, 773
NsiI ATGCAT 1 cut(s) 527
PaeR7I CTCGAG 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 239
PfeI GAWTC 4 cut(s) 176, 275, 297, 739
PkrI GCNGC 6 cut(s) 249, 459, 589, 592, 890, 939
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PshBI ATTAAT 1 cut(s) 758
Psp124BI GAGCTC 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 508
PspFI CCCAGC 1 cut(s) 730
PspGI CCWGG 1 cut(s) 508
PspN4I GGNNCC 2 cut(s) 150, 283
PspPI GGNCC 1 cut(s) 733
PsuI RGATCY 1 cut(s) 744
PvuII CAGCTG 2 cut(s) 590, 937
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 871
SacI GAGCTC 1 cut(s) 264
SapI GCTCTTC 1 cut(s) 245
SaqAI TTAA 4 cut(s) 462, 758, 842, 954
SatI GCNGC 6 cut(s) 248, 458, 588, 591, 889, 938
Sau3AI GATC 3 cut(s) 540, 709, 744
Sau96I GGNCC 1 cut(s) 733
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 3 cut(s) 398, 510, 573
SduI GDGCHC 4 cut(s) 153, 264, 286, 293
SfaNI GCATC 3 cut(s) 331, 534, 673
Sfr274I CTCGAG 1 cut(s) 230
SlaI CTCGAG 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 871
SmlI CTYRAG 4 cut(s) 230, 263, 354, 953
SmoI CTYRAG 4 cut(s) 230, 263, 354, 953
Sse9I AATT 3 cut(s) 623, 843, 943
SsiI CCGC 5 cut(s) 227, 248, 596, 781, 940
SspI AATATT 2 cut(s) 316, 762
SspMI CTAG 5 cut(s) 197, 336, 488, 723, 961
SstI GAGCTC 1 cut(s) 264
StyD4I CCNGG 3 cut(s) 396, 508, 571
StyI CCWWGG 1 cut(s) 872
TaaI ACNGT 1 cut(s) 435
TaiI ACGT 1 cut(s) 500
TaqI TCGA 5 cut(s) 186, 219, 231, 311, 681
TaqII GACCGA 1 cut(s) 272
TasI AATT 3 cut(s) 623, 843, 943
TatI WGTACW 1 cut(s) 267
TauI GCSGC 1 cut(s) 250
TfiI GAWTC 4 cut(s) 176, 275, 297, 739
Tru1I TTAA 4 cut(s) 462, 758, 842, 954
Tru9I TTAA 4 cut(s) 462, 758, 842, 954
TseFI GTSAC 2 cut(s) 349, 773
TseI GCWGC 5 cut(s) 457, 587, 590, 888, 937
Tsp45I GTSAC 2 cut(s) 349, 773
Vha464I CTTAAG 1 cut(s) 953
VspI ATTAAT 1 cut(s) 758
XapI RAATTY 1 cut(s) 623
XhoI CTCGAG 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 239
XspI CTAG 5 cut(s) 197, 336, 488, 723, 961
ZraI GACGTC 1 cut(s) 498
Zsp2I ATGCAT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.