AT5G14440

BEST Arabidopsis thaliana protein match is Surfeit locus protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007923
Physical Location & Seq
Reverse (-)
4655903 .. 4657907
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14440.2

Sequence Viewer

Length: 879 bp
ATGGCGGCGACAGAGGAAGAGGTGACGACGACGAAGGAAGGCGCCGACCTATTGGGGAAGCCAAAGTATAAGAAACTCGAGAACGGGAGATTTAAATGCGTGCAGACGGGTCACGAGCTACTCGAGAAAGACAAGAAGGTCTATTCACAGAGTAAACGATGCCGTTTAGGGCTTATTGATTATGCCTTATCTCATAGCAAGCCTCCTCTTAACTTGTTCGAACAAGATCCTAACGCTCGCTCAAAACTGAAATGTAAGCTAACGGGCGATACGGTAAACAAGACTGAGGAACATATTTGGAAGCATATCACTGGACGGCGCTTCCTCAACAGATTAGAGGAGAAGGAACGAGAGAAAGAGTCTGGATCTATTCCAGCGGAAGGTGGAGAAACACCGGCGAAGGAAAATGGCGTAGAGGATGAAGATAAGAAAAAGAAGAAGAAGAAGAATAATAAGAAGAAGAAAAACAAGAAGTCAGTTGAAAAGAAAAAGAATGGAGAGGATGTTGCTGATGAAATCGAACATGAAAATGATGAAGCTGTTGAGGAGGAGCTTGAGTTTTGGATGCCTCCAGATGGAGAGAGGTGGGACTTTGATGATGGAAGAGACCGGTGGGGCTCAGATTCAGACTCAGATGTGGAAATGAATGAGGAAACAGATCCCATAGGTGAATTTGATGAAGATGGAGAGATTAGTATGGAAGAGTCCATACTAATAGGTGAAGTTGATGAAGATGGCAAGATTGTTTTGGATGACACTCATGCCAGCAGCAACAAGAGGAAACATGAAGAACTCGGTTCCAGTGACCTTCCTTCGAAGAAGAAGAATAAGAAGAAGAAAAAGAAGAAGAATGTCGAAGCAACATCGTCGTCATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURF2

Protein Analysis

292

Amino Acids

33.4

Weight (kDa)

5.48

Isoelectric Point (pI)

49.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURF2 PF05477 11 - 229 1.3e-42 Surfeit locus protein 2 (SURF2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
AccB1I GGYRCC 1 cut(s) 41
AciI CCGC 2 cut(s) 5, 377
AclWI GGATC 3 cut(s) 221, 373, 653
AcsI RAATTY 1 cut(s) 671
AcyI GRCGYC 1 cut(s) 42
AfiI CCNNNNNNNGG 2 cut(s) 380, 575
AgeI ACCGGT 1 cut(s) 609
AgsI TTSAA 1 cut(s) 482
AluBI AGCT 4 cut(s) 118, 259, 539, 553
AluI AGCT 4 cut(s) 118, 259, 539, 553
Alw26I GTCTC 1 cut(s) 600
AlwI GGATC 3 cut(s) 221, 373, 653
Ama87I CYCGRG 2 cut(s) 77, 122
ApeKI GCWGC 1 cut(s) 768
ApoI RAATTY 1 cut(s) 671
AsiGI ACCGGT 1 cut(s) 609
AspLEI GCGC 2 cut(s) 44, 321
AsuHPI GGTGA 3 cut(s) 34, 680, 731
AsuII TTCGAA 2 cut(s) 219, 815
AvaI CYCGRG 2 cut(s) 77, 122
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 620
BarI GAAGNNNNNNTAC 2 cut(s) 693, 725
BauI CACGAG 1 cut(s) 113
BbvI GCAGC 1 cut(s) 780
BccI CCATC 4 cut(s) 569, 593, 677, 728
BceAI ACGGC 2 cut(s) 147, 332
BcgI CGANNNNNNTGC 1 cut(s) 849
BcoDI GTCTC 1 cut(s) 600
BfoI RGCGCY 2 cut(s) 45, 322
BisI GCNGC 2 cut(s) 6, 769
BlsI GCNGC 2 cut(s) 7, 770
BmeT110I CYCGRG 2 cut(s) 77, 122
BmiI GGNNCC 2 cut(s) 43, 799
BmsI GCATC 2 cut(s) 149, 555
BpmI CTGGAG 1 cut(s) 555
Bpu14I TTCGAA 2 cut(s) 219, 815
BpuEI CTTGAG 1 cut(s) 575
BsaHI GRCGYC 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 600
BsaWI WCCGGW 1 cut(s) 609
BsaXI ACNNNNNCTCC 4 cut(s) 489, 519, 542, 572
Bsc4I CCNNNNNNNGG 2 cut(s) 380, 575
Bse118I RCCGGY 2 cut(s) 394, 609
Bse1I ACTGG 2 cut(s) 316, 801
BseGI GGATG 4 cut(s) 424, 508, 570, 757
BseLI CCNNNNNNNGG 2 cut(s) 380, 575
BseMII CTCAG 3 cut(s) 276, 633, 645
BseNI ACTGG 2 cut(s) 316, 801
BseRI GAGGAG 4 cut(s) 195, 353, 560, 563
BseXI GCAGC 1 cut(s) 780
BsgI GTGCAG 1 cut(s) 122
BshNI GGYRCC 1 cut(s) 41
BshTI ACCGGT 1 cut(s) 609
BsiHKCI CYCGRG 2 cut(s) 77, 122
BsiSI CCGG 2 cut(s) 395, 610
BslFI GGGAC 1 cut(s) 602
BslI CCNNNNNNNGG 2 cut(s) 380, 575
BsmAI GTCTC 1 cut(s) 600
BsmFI GGGAC 1 cut(s) 602
Bso31I GGTCTC 1 cut(s) 600
BsoBI CYCGRG 2 cut(s) 77, 122
Bsp119I TTCGAA 2 cut(s) 219, 815
Bsp1286I GDGCHC 1 cut(s) 620
Bsp143I GATC 3 cut(s) 226, 365, 658
BspACI CCGC 2 cut(s) 5, 377
BspCNI CTCAG 3 cut(s) 277, 632, 644
BspLI GGNNCC 2 cut(s) 43, 799
BspPI GGATC 3 cut(s) 221, 373, 653
BspT104I TTCGAA 2 cut(s) 219, 815
BspT107I GGYRCC 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 600
BsrFI RCCGGY 2 cut(s) 394, 609
BsrI ACTGG 2 cut(s) 316, 801
BssAI RCCGGY 2 cut(s) 394, 609
BssMI GATC 3 cut(s) 226, 365, 658
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 1 cut(s) 113
Bst2BI CACGAG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 3 cut(s) 12, 598, 696
BstACI GRCGYC 1 cut(s) 42
BstBI TTCGAA 2 cut(s) 219, 815
BstC8I GCNNGC 4 cut(s) 101, 200, 238, 766
BstDEI CTNAG 3 cut(s) 285, 619, 631
BstF5I GGATG 4 cut(s) 424, 508, 570, 757
BstH2I RGCGCY 2 cut(s) 45, 322
BstHHI GCGC 2 cut(s) 44, 321
BstKTI GATC 3 cut(s) 229, 368, 661
BstMAI GTCTC 1 cut(s) 600
BstMBI GATC 3 cut(s) 226, 365, 658
BstV1I GCAGC 1 cut(s) 780
BstX2I RGATCY 3 cut(s) 226, 365, 658
BstYI RGATCY 3 cut(s) 226, 365, 658
BtsCI GGATG 4 cut(s) 424, 508, 570, 757
BtsIMutI CAGTG 2 cut(s) 309, 808
Cac8I GCNNGC 4 cut(s) 101, 200, 238, 766
CfoI GCGC 2 cut(s) 44, 321
Cfr10I RCCGGY 2 cut(s) 394, 609
CspAI ACCGGT 1 cut(s) 609
CviAII CATG 3 cut(s) 524, 761, 785
CviJI RGCY 8 cut(s) 61, 118, 172, 202, 259, 539, 553, 618
CviKI_1 RGCY 8 cut(s) 61, 118, 172, 202, 259, 539, 553, 618
DdeI CTNAG 3 cut(s) 285, 619, 631
DinI GGCGCC 1 cut(s) 43
DpnI GATC 3 cut(s) 228, 367, 660
DpnII GATC 3 cut(s) 226, 365, 658
DraI TTTAAA 1 cut(s) 94
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
Eam1104I CTCTTC 3 cut(s) 12, 598, 696
EarI CTCTTC 3 cut(s) 12, 598, 696
Eco24I GRGCYC 1 cut(s) 620
Eco31I GGTCTC 1 cut(s) 600
Eco88I CYCGRG 2 cut(s) 77, 122
EcoT38I GRGCYC 1 cut(s) 620
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
FaeI CATG 3 cut(s) 527, 764, 788
FaqI GGGAC 1 cut(s) 602
FatI CATG 3 cut(s) 523, 760, 784
Fnu4HI GCNGC 2 cut(s) 6, 769
FokI GGATG 4 cut(s) 431, 515, 577, 764
FriOI GRGCYC 1 cut(s) 620
Fsp4HI GCNGC 2 cut(s) 6, 769
GlaI GCGC 2 cut(s) 43, 320
GluI GCNGC 2 cut(s) 6, 769
GsuI CTGGAG 1 cut(s) 555
HaeII RGCGCY 2 cut(s) 45, 322
HapII CCGG 2 cut(s) 395, 610
HhaI GCGC 2 cut(s) 44, 321
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 3 cut(s) 527, 764, 788
Hin6I GCGC 2 cut(s) 42, 319
HinP1I GCGC 2 cut(s) 42, 319
HinfI GANTC 4 cut(s) 359, 623, 629, 704
HpaII CCGG 2 cut(s) 395, 610
HphI GGTGA 3 cut(s) 34, 680, 731
Hpy166II GTNNAC 2 cut(s) 155, 277
Hpy188I TCNGA 3 cut(s) 622, 628, 634
Hpy188III TCNNGA 5 cut(s) 79, 113, 124, 363, 572
Hpy8I GTNNAC 2 cut(s) 155, 277
Hpy99I CGWCG 3 cut(s) 31, 34, 871
HpyAV CCTTC 8 cut(s) 28, 32, 130, 337, 374, 394, 818, 822
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4V TGCA 1 cut(s) 103
HpyF3I CTNAG 3 cut(s) 285, 619, 631
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 3 cut(s) 527, 764, 788
HspAI GCGC 2 cut(s) 42, 319
KasI GGCGCC 1 cut(s) 41
Kzo9I GATC 3 cut(s) 226, 365, 658
LmnI GCTCC 1 cut(s) 550
LpnPI CCDG 8 cut(s) 297, 348, 387, 408, 585, 623, 778, 814
Lsp1109I GCAGC 1 cut(s) 780
LweI GCATC 2 cut(s) 149, 555
MaeIII GTNAC 3 cut(s) 22, 110, 803
MalI GATC 3 cut(s) 228, 367, 660
MboI GATC 3 cut(s) 226, 365, 658
MflI RGATCY 3 cut(s) 226, 365, 658
MhlI GDGCHC 1 cut(s) 620
MluCI AATT 1 cut(s) 671
Mly113I GGCGCC 1 cut(s) 42
MlyI GAGTC 3 cut(s) 368, 623, 713
MseI TTAA 3 cut(s) 93, 210, 877
MslI CAYNNNNRTG 1 cut(s) 528
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 2 cut(s) 395, 610
NarI GGCGCC 1 cut(s) 42
NdeII GATC 3 cut(s) 226, 365, 658
NlaIII CATG 3 cut(s) 527, 764, 788
NlaIV GGNNCC 2 cut(s) 43, 799
NmuCI GTSAC 3 cut(s) 22, 110, 803
NspV TTCGAA 2 cut(s) 219, 815
PaeR7I CTCGAG 2 cut(s) 77, 122
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 1 cut(s) 623
PinAI ACCGGT 1 cut(s) 609
PkrI GCNGC 2 cut(s) 7, 770
PleI GAGTC 3 cut(s) 367, 623, 712
PluTI GGCGCC 1 cut(s) 45
PpsI GAGTC 3 cut(s) 367, 623, 712
PspN4I GGNNCC 2 cut(s) 43, 799
PsuI RGATCY 3 cut(s) 226, 365, 658
RseI CAYNNNNRTG 1 cut(s) 528
SaqAI TTAA 3 cut(s) 93, 210, 877
SatI GCNGC 2 cut(s) 6, 769
Sau3AI GATC 3 cut(s) 226, 365, 658
SchI GAGTC 3 cut(s) 368, 623, 713
SduI GDGCHC 1 cut(s) 620
SfaNI GCATC 2 cut(s) 149, 555
SfoI GGCGCC 1 cut(s) 43
Sfr274I CTCGAG 2 cut(s) 77, 122
SfuI TTCGAA 2 cut(s) 219, 815
SgrAI CRCCGGYG 1 cut(s) 394
SlaI CTCGAG 2 cut(s) 77, 122
SmiI ATTTAAAT 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 528
SmlI CTYRAG 3 cut(s) 77, 122, 554
SmoI CTYRAG 3 cut(s) 77, 122, 554
Sse9I AATT 1 cut(s) 671
SsiI CCGC 2 cut(s) 5, 377
SspDI GGCGCC 1 cut(s) 41
SwaI ATTTAAAT 1 cut(s) 94
TaaI ACNGT 1 cut(s) 274
TaqI TCGA 6 cut(s) 78, 123, 219, 519, 815, 855
TasI AATT 1 cut(s) 671
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 623
Tru1I TTAA 3 cut(s) 93, 210, 877
Tru9I TTAA 3 cut(s) 93, 210, 877
TscAI CASTG 2 cut(s) 316, 808
TseFI GTSAC 3 cut(s) 22, 110, 803
TseI GCWGC 1 cut(s) 768
Tsp45I GTSAC 3 cut(s) 22, 110, 803
TspDTI ATGAA 8 cut(s) 435, 528, 540, 549, 659, 693, 744, 801
TspRI CASTG 2 cut(s) 316, 808
XapI RAATTY 1 cut(s) 671
XhoI CTCGAG 2 cut(s) 77, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.