Rh2DG674300

Surfeit locus protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0007923
Physical Location & Seq
Forward (+)
89618445 .. 89622664
4220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG674300.1

Sequence Viewer

Length: 747 bp
ATGGCCACGAGTGAGGAGAAGACCAGCAATACTAAAGAAGGGAACAACCTACTGGGCTCGCCGACCTTCAAGGACCTCGATAATGGTCGCTTCCAGTGCGTCGAGACTGGCCACCAATTACTGGCCAAAGACATTGAATCCTATTCTCAGAGCAAACGGTGCCGTTTGGGTCTCATCGAATTCGCACTCGCTCATAAGAAACCTCCTCTCAACATGTTCAAGCAGGACCCTCTTTCTCGTTCAAAGTTGGTGTGTAAGCTAACCGAGGATACCATCAATAAGTCAGAGGAACACATTTGGAAGCATATTAATGGGAAACGATTCCTCAACAAACTGGAAGAAATGGAAGAACAAAAGTTAACAGTAAATGAAATGGAAGAAGAGCTAGATGATCACAAACCTGATAAAGTATCTAAGCCAGGCAAAGATGGTGCCAGGAAGGAGAAAAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGCAAAGGAGGAGGATGATGGTGATGATGAGATTATCTCTGAAATACCCAAGTCTCCTAGTGAGGAAAATGATTCTGAAGAAGCTGAGTTCTGGATCCCTCCACCAGGAGCACGTTGGGATTTTGATGATGGCGGTGACAGATGGGGTTCCGATTCAGAGTCAGAGAGCAATGACGAGAAGAAAAGTGGCGAGGTTGATGGAATTGGTATGGATTTAAATCTGAACTTTGGGTTTAATTCTATATGCTTTCTTTGTTTCCAACTTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURF2

Protein Analysis

248

Amino Acids

28.32

Weight (kDa)

4.91

Isoelectric Point (pI)

58.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURF2 PF05477 12 - 223 4.1e-51 Surfeit locus protein 2 (SURF2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 159, 431
AccB7I CCANNNNNTGG 1 cut(s) 121
AciI CCGC 1 cut(s) 609
AclWI GGATC 2 cut(s) 565, 578
AcoI YGGCCR 3 cut(s) 3, 109, 123
AcsI RAATTY 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 573
AfiI CCNNNNNNNGG 2 cut(s) 121, 581
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 4 cut(s) 70, 137, 220, 243
AjnI CCWGG 3 cut(s) 418, 434, 580
AluBI AGCT 3 cut(s) 259, 385, 560
AluI AGCT 3 cut(s) 259, 385, 560
Alw21I GWGCWC 1 cut(s) 589
Alw26I GTCTC 3 cut(s) 98, 176, 534
AlwI GGATC 2 cut(s) 565, 578
AoxI GGCC 3 cut(s) 3, 109, 123
ApoI RAATTY 1 cut(s) 179
AseI ATTAAT 1 cut(s) 309
Asp700I GAANNNNTTC 1 cut(s) 320
AspS9I GGNCC 2 cut(s) 73, 226
AsuHPI GGTGA 2 cut(s) 509, 623
AvaII GGWCC 2 cut(s) 73, 226
BalI TGGCCA 3 cut(s) 5, 111, 125
BamHI GGATCC 1 cut(s) 570
BanI GGYRCC 2 cut(s) 159, 431
BanII GRGCYC 1 cut(s) 59
BauI CACGAG 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 589
BccI CCATC 6 cut(s) 281, 422, 488, 599, 612, 668
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 3 cut(s) 420, 436, 582
BciVI GTATCC 1 cut(s) 262
BclI TGATCA 1 cut(s) 391
BcoDI GTCTC 3 cut(s) 98, 176, 534
BfaI CTAG 2 cut(s) 386, 534
BfuI GTATCC 1 cut(s) 262
Bme1390I CCNGG 3 cut(s) 420, 436, 582
Bme18I GGWCC 2 cut(s) 73, 226
BmgT120I GGNCC 2 cut(s) 73, 226
BmiI GGNNCC 5 cut(s) 161, 228, 433, 572, 625
BmrFI CCNGG 3 cut(s) 420, 436, 582
BmrI ACTGGG 1 cut(s) 62
BmuI ACTGGG 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 26
BplI GAGNNNNNCTC 2 cut(s) 497, 529
BsaBI GATNNNNATC 1 cut(s) 693
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 581
Bse1I ACTGG 5 cut(s) 57, 94, 112, 126, 339
Bse3DI GCAATG 1 cut(s) 652
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 3 cut(s) 420, 436, 582
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 496
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 2 cut(s) 121, 581
BseMI GCAATG 1 cut(s) 652
BseMII CTCAG 2 cut(s) 161, 552
BseNI ACTGG 5 cut(s) 57, 94, 112, 126, 339
BseRI GAGGAG 5 cut(s) 29, 195, 485, 488, 500
BshFI GGCC 3 cut(s) 5, 111, 125
BshNI GGYRCC 2 cut(s) 159, 431
BsiHKAI GWGCWC 1 cut(s) 589
BslI CCNNNNNNNGG 2 cut(s) 121, 581
BsmAI GTCTC 3 cut(s) 98, 176, 534
BsnI GGCC 3 cut(s) 5, 111, 125
Bso31I GGTCTC 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 59, 589
Bsp143I GATC 2 cut(s) 391, 570
BspACI CCGC 1 cut(s) 609
BspANI GGCC 3 cut(s) 5, 111, 125
BspCNI CTCAG 2 cut(s) 160, 553
BspLI GGNNCC 5 cut(s) 161, 228, 433, 572, 625
BspPI GGATC 2 cut(s) 565, 578
BspQI GCTCTTC 1 cut(s) 375
BspT107I GGYRCC 2 cut(s) 159, 431
BspTNI GGTCTC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 652
BsrI ACTGG 5 cut(s) 57, 94, 112, 126, 339
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 2 cut(s) 391, 570
BssSI CACGAG 1 cut(s) 7
Bst2BI CACGAG 1 cut(s) 7
Bst2UI CCWGG 3 cut(s) 420, 436, 582
Bst4CI ACNGT 2 cut(s) 159, 364
Bst6I CTCTTC 1 cut(s) 375
BstAPI GCANNNNNTGC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 3 cut(s) 147, 414, 561
BstENI CCTNNNNNAGG 1 cut(s) 579
BstF5I GGATG 1 cut(s) 496
BstKTI GATC 2 cut(s) 394, 573
BstMAI GTCTC 3 cut(s) 98, 176, 534
BstMBI GATC 2 cut(s) 391, 570
BstMWI GCNNNNNNNGC 2 cut(s) 96, 159
BstNI CCWGG 3 cut(s) 420, 436, 582
BstNSI RCATGY 1 cut(s) 217
BstSCI CCNGG 3 cut(s) 418, 434, 580
BstV2I GAAGAC 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 570
BstYI RGATCY 1 cut(s) 570
BsuI GTATCC 1 cut(s) 262
BsuRI GGCC 3 cut(s) 5, 111, 125
BtsCI GGATG 1 cut(s) 496
BtsIMutI CAGTG 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 73, 226
CseI GACGC 1 cut(s) 88
CviAII CATG 1 cut(s) 214
CviJI RGCY 8 cut(s) 5, 57, 111, 125, 259, 385, 418, 560
CviKI_1 RGCY 8 cut(s) 5, 57, 111, 125, 259, 385, 418, 560
DdeI CTNAG 3 cut(s) 147, 414, 561
DpnI GATC 2 cut(s) 393, 572
DpnII GATC 2 cut(s) 391, 570
DraI TTTAAA 1 cut(s) 693
EaeI YGGCCR 3 cut(s) 3, 109, 123
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 2 cut(s) 73, 226
Eco57I CTGAAG 1 cut(s) 573
EcoNI CCTNNNNNAGG 1 cut(s) 579
EcoO109I RGGNCCY 2 cut(s) 73, 226
EcoRI GAATTC 1 cut(s) 179
EcoRII CCWGG 3 cut(s) 418, 434, 580
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 1 cut(s) 217
FaiI YATR 7 cut(s) 195, 215, 306, 686, 719, 721, 745
FatI CATG 1 cut(s) 213
FbaI TGATCA 1 cut(s) 391
FokI GGATG 1 cut(s) 503
FriOI GRGCYC 1 cut(s) 59
FspBI CTAG 2 cut(s) 386, 534
HaeIII GGCC 3 cut(s) 5, 111, 125
HgaI GACGC 1 cut(s) 88
Hin1II CATG 1 cut(s) 217
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HinfI GANTC 5 cut(s) 137, 321, 548, 629, 635
HpaI GTTAAC 1 cut(s) 360
HphI GGTGA 2 cut(s) 509, 623
Hpy166II GTNNAC 1 cut(s) 360
Hpy188I TCNGA 8 cut(s) 150, 286, 517, 553, 628, 634, 640, 699
Hpy188III TCNNGA 2 cut(s) 103, 568
Hpy8I GTNNAC 1 cut(s) 360
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 4 cut(s) 32, 76, 433, 460
HpyCH4III ACNGT 2 cut(s) 159, 364
HpyCH4IV ACGT 1 cut(s) 589
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 159
HpyF3I CTNAG 3 cut(s) 147, 414, 561
HpySE526I ACGT 1 cut(s) 589
Hsp92II CATG 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 391
KspAI GTTAAC 1 cut(s) 360
Kzo9I GATC 2 cut(s) 391, 570
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 1 cut(s) 584
MaeI CTAG 2 cut(s) 386, 534
MaeII ACGT 1 cut(s) 589
MaeIII GTNAC 1 cut(s) 611
MalI GATC 2 cut(s) 393, 572
MboI GATC 2 cut(s) 391, 570
MflI RGATCY 1 cut(s) 570
MhlI GDGCHC 2 cut(s) 59, 589
MlsI TGGCCA 3 cut(s) 5, 111, 125
MluCI AATT 4 cut(s) 116, 179, 678, 712
MluNI TGGCCA 3 cut(s) 5, 111, 125
MlyI GAGTC 1 cut(s) 644
Mox20I TGGCCA 3 cut(s) 5, 111, 125
MroXI GAANNNNTTC 1 cut(s) 320
MscI TGGCCA 3 cut(s) 5, 111, 125
MseI TTAA 4 cut(s) 309, 359, 692, 711
MslI CAYNNNNRTG 1 cut(s) 309
Msp20I TGGCCA 3 cut(s) 5, 111, 125
MspR9I CCNGG 3 cut(s) 420, 436, 582
MvaI CCWGG 3 cut(s) 420, 436, 582
MwoI GCNNNNNNNGC 2 cut(s) 96, 159
NdeII GATC 2 cut(s) 391, 570
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 5 cut(s) 161, 228, 433, 572, 625
NmuCI GTSAC 1 cut(s) 611
NspI RCATGY 1 cut(s) 217
PciI ACATGT 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 4 cut(s) 137, 321, 548, 629
PflMI CCANNNNNTGG 1 cut(s) 121
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
PpuMI RGGWCCY 2 cut(s) 73, 226
PscI ACATGT 1 cut(s) 213
PshBI ATTAAT 1 cut(s) 309
Psp5II RGGWCCY 2 cut(s) 73, 226
Psp6I CCWGG 3 cut(s) 418, 434, 580
PspGI CCWGG 3 cut(s) 418, 434, 580
PspN4I GGNNCC 5 cut(s) 161, 228, 433, 572, 625
PspPI GGNCC 2 cut(s) 73, 226
PspPPI RGGWCCY 2 cut(s) 73, 226
PsuI RGATCY 1 cut(s) 570
RseI CAYNNNNRTG 1 cut(s) 309
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 4 cut(s) 309, 359, 692, 711
Sau3AI GATC 2 cut(s) 391, 570
Sau96I GGNCC 2 cut(s) 73, 226
SchI GAGTC 1 cut(s) 644
ScrFI CCNGG 3 cut(s) 420, 436, 582
SduI GDGCHC 2 cut(s) 59, 589
SinI GGWCC 2 cut(s) 73, 226
SmiI ATTTAAAT 1 cut(s) 693
SmiMI CAYNNNNRTG 1 cut(s) 309
Sse9I AATT 4 cut(s) 116, 179, 678, 712
SsiI CCGC 1 cut(s) 609
SspMI CTAG 2 cut(s) 386, 534
StyD4I CCNGG 3 cut(s) 418, 434, 580
SwaI ATTTAAAT 1 cut(s) 693
TaaI ACNGT 2 cut(s) 159, 364
TaiI ACGT 1 cut(s) 592
TaqI TCGA 3 cut(s) 78, 102, 177
TasI AATT 4 cut(s) 116, 179, 678, 712
TfiI GAWTC 4 cut(s) 137, 321, 548, 629
Tru1I TTAA 4 cut(s) 309, 359, 692, 711
Tru9I TTAA 4 cut(s) 309, 359, 692, 711
TscAI CASTG 1 cut(s) 101
TseFI GTSAC 1 cut(s) 611
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 1 cut(s) 384
TspRI CASTG 1 cut(s) 101
Van91I CCANNNNNTGG 1 cut(s) 121
VpaK11BI GGWCC 2 cut(s) 73, 226
VspI ATTAAT 1 cut(s) 309
XagI CCTNNNNNAGG 1 cut(s) 579
XapI RAATTY 1 cut(s) 179
XceI RCATGY 1 cut(s) 217
XcmI CCANNNNNNNNNTGG 1 cut(s) 588
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 2 cut(s) 386, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.