RLG00000022186

Surfeit locus protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0007923
Physical Location & Seq
Forward (+)
81601644 .. 81603446
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022186

Sequence Viewer

Length: 588 bp
ATGTTCAAGCAGGACCCTCTTTCTCGTTCAAAGTTGGTGTGTAAGCTAACCGAGGATACCATCAATAAGTCAGAGGAACACATTTGGAAGCATATTAATGGGAAACGATTCCTCAACAAACTGGAAGAAATGGAAGAACAAAAGCTAACAGTAAATGAAATGGAAGAAGAGCTGGATGATCACAAACCTAAGCCAGGCAAAGATGGTGCCAGGAAGGAGAAAAAGGAGAAGAAAAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGCAAAGGAGGAGGATGATGGTGATGATGAGATTATCTCTGAAATACCCAAGTCTCCTAGTGAGGAAAATGATTCTGAAGAAGCTGAGTTCTGGATCCCCCCACCAGGAGCACGTTGGGATTTTGATGATGGCGGTGACAGATGGGGTTCCGATTCAGAGTCAGAGAGCAATGACGAGAACAAAAGTGGCGAGGTTGATGGAATTGTTGAAGATGATGATGAGGAGTCAGAAGAGATCTCAATGCGGACAAAAAGAATGTCCATAGAAATTGGACCAAGCAGCTTTGCATCCAGAAAGAAGAAGAGTAAAAAGAACACTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURF2

Protein Analysis

196

Amino Acids

22.53

Weight (kDa)

4.8

Isoelectric Point (pI)

78.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURF2 PF05477 1 - 191 4.9e-34 Surfeit locus protein 2 (SURF2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 206
AciI CCGC 2 cut(s) 396, 508
AclWI GGATC 2 cut(s) 352, 365
AcuI CTGAAG 1 cut(s) 360
AfiI CCNNNNNNNGG 2 cut(s) 194, 368
AgsI TTSAA 3 cut(s) 7, 30, 473
AjnI CCWGG 3 cut(s) 193, 209, 367
AluBI AGCT 5 cut(s) 46, 145, 172, 347, 546
AluI AGCT 5 cut(s) 46, 145, 172, 347, 546
Alw21I GWGCWC 1 cut(s) 376
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 2 cut(s) 352, 365
ApeKI GCWGC 1 cut(s) 543
ArsI GACNNNNNNTTYG 2 cut(s) 506, 538
AseI ATTAAT 1 cut(s) 96
Asp700I GAANNNNTTC 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 13, 536
AsuHPI GGTGA 2 cut(s) 296, 410
AvaII GGWCC 2 cut(s) 13, 536
BamHI GGATCC 1 cut(s) 357
BanI GGYRCC 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 376
BbvI GCAGC 1 cut(s) 555
BccI CCATC 6 cut(s) 68, 197, 275, 386, 399, 455
BciT130I CCWGG 3 cut(s) 195, 211, 369
BciVI GTATCC 1 cut(s) 49
BclI TGATCA 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 321
BfaI CTAG 1 cut(s) 321
BfuI GTATCC 1 cut(s) 49
BglII AGATCT 1 cut(s) 498
BisI GCNGC 1 cut(s) 544
BlsI GCNGC 1 cut(s) 545
Bme1390I CCNGG 3 cut(s) 195, 211, 369
Bme18I GGWCC 2 cut(s) 13, 536
BmgT120I GGNCC 2 cut(s) 13, 536
BmiI GGNNCC 4 cut(s) 15, 208, 359, 412
BmrFI CCNGG 3 cut(s) 195, 211, 369
BmsI GCATC 1 cut(s) 560
BplI GAGNNNNNCTC 2 cut(s) 284, 316
Bpu10I CCTNAGC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 368
Bse1I ACTGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 439
BseBI CCWGG 3 cut(s) 195, 211, 369
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 3 cut(s) 181, 283, 551
BseLI CCNNNNNNNGG 2 cut(s) 194, 368
BseMI GCAATG 1 cut(s) 439
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 5 cut(s) 269, 272, 275, 287, 500
BseXI GCAGC 1 cut(s) 555
BshNI GGYRCC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 376
BslI CCNNNNNNNGG 2 cut(s) 194, 368
BsmAI GTCTC 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 376
Bsp143I GATC 3 cut(s) 178, 357, 498
BspACI CCGC 2 cut(s) 396, 508
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 4 cut(s) 15, 208, 359, 412
BspPI GGATC 2 cut(s) 352, 365
BspQI GCTCTTC 1 cut(s) 162
BspT107I GGYRCC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 439
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 3 cut(s) 178, 357, 498
Bst2UI CCWGG 3 cut(s) 195, 211, 369
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 3 cut(s) 162, 489, 560
BstDEI CTNAG 2 cut(s) 189, 348
BstENI CCTNNNNNAGG 1 cut(s) 192
BstF5I GGATG 3 cut(s) 181, 283, 551
BstKTI GATC 3 cut(s) 181, 360, 501
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 3 cut(s) 178, 357, 498
BstNI CCWGG 3 cut(s) 195, 211, 369
BstSCI CCNGG 3 cut(s) 193, 209, 367
BstV1I GCAGC 1 cut(s) 555
BstX2I RGATCY 2 cut(s) 357, 498
BstYI RGATCY 2 cut(s) 357, 498
BsuI GTATCC 1 cut(s) 49
BtsCI GGATG 3 cut(s) 181, 283, 551
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 1 cut(s) 579
Cfr13I GGNCC 2 cut(s) 13, 536
CviAII CATG 1 cut(s) 585
CviJI RGCY 6 cut(s) 46, 145, 172, 193, 347, 546
CviKI_1 RGCY 6 cut(s) 46, 145, 172, 193, 347, 546
DdeI CTNAG 2 cut(s) 189, 348
DpnI GATC 3 cut(s) 180, 359, 500
DpnII GATC 3 cut(s) 178, 357, 498
Eam1104I CTCTTC 3 cut(s) 162, 489, 560
EarI CTCTTC 3 cut(s) 162, 489, 560
Eco47I GGWCC 2 cut(s) 13, 536
Eco57I CTGAAG 1 cut(s) 360
EcoNI CCTNNNNNAGG 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 13
EcoRII CCWGG 3 cut(s) 193, 209, 367
FaeI CATG 1 cut(s) 588
FaiI YATR 3 cut(s) 93, 527, 586
FatI CATG 1 cut(s) 584
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 544
FokI GGATG 3 cut(s) 188, 290, 538
Fsp4HI GCNGC 1 cut(s) 544
FspBI CTAG 1 cut(s) 321
GluI GCNGC 1 cut(s) 544
Hin1II CATG 1 cut(s) 588
HinfI GANTC 5 cut(s) 108, 335, 416, 422, 488
HphI GGTGA 2 cut(s) 296, 410
Hpy188I TCNGA 7 cut(s) 73, 304, 340, 415, 421, 427, 493
Hpy188III TCNNGA 2 cut(s) 355, 555
HpyAV CCTTC 2 cut(s) 208, 244
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 2 cut(s) 551, 584
HpyF3I CTNAG 2 cut(s) 189, 348
HpySE526I ACGT 1 cut(s) 376
Hsp92II CATG 1 cut(s) 588
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 3 cut(s) 178, 357, 498
LguI GCTCTTC 1 cut(s) 162
LmnI GCTCC 1 cut(s) 371
Lsp1109I GCAGC 1 cut(s) 555
LweI GCATC 1 cut(s) 560
MaeI CTAG 1 cut(s) 321
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 1 cut(s) 398
MalI GATC 3 cut(s) 180, 359, 500
MboI GATC 3 cut(s) 178, 357, 498
MflI RGATCY 2 cut(s) 357, 498
MhlI GDGCHC 1 cut(s) 376
MluCI AATT 2 cut(s) 465, 531
MlyI GAGTC 2 cut(s) 431, 497
MroXI GAANNNNTTC 1 cut(s) 107
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 96
MspR9I CCNGG 3 cut(s) 195, 211, 369
MvaI CCWGG 3 cut(s) 195, 211, 369
NdeII GATC 3 cut(s) 178, 357, 498
NlaIII CATG 1 cut(s) 588
NlaIV GGNNCC 4 cut(s) 15, 208, 359, 412
NmuCI GTSAC 1 cut(s) 398
PciSI GCTCTTC 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 3 cut(s) 108, 335, 416
PkrI GCNGC 1 cut(s) 545
PleI GAGTC 2 cut(s) 430, 496
PpsI GAGTC 2 cut(s) 430, 496
PpuMI RGGWCCY 1 cut(s) 13
PshBI ATTAAT 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 13
Psp6I CCWGG 3 cut(s) 193, 209, 367
PspGI CCWGG 3 cut(s) 193, 209, 367
PspN4I GGNNCC 4 cut(s) 15, 208, 359, 412
PspPI GGNCC 2 cut(s) 13, 536
PspPPI RGGWCCY 1 cut(s) 13
PsuI RGATCY 2 cut(s) 357, 498
RseI CAYNNNNRTG 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 544
Sau3AI GATC 3 cut(s) 178, 357, 498
Sau96I GGNCC 2 cut(s) 13, 536
SchI GAGTC 2 cut(s) 431, 497
ScrFI CCNGG 3 cut(s) 195, 211, 369
SduI GDGCHC 1 cut(s) 376
SetI ASST 8 cut(s) 48, 147, 174, 190, 349, 379, 459, 548
SfaNI GCATC 1 cut(s) 560
SinI GGWCC 2 cut(s) 13, 536
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 2 cut(s) 465, 531
SsiI CCGC 2 cut(s) 396, 508
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 3 cut(s) 193, 209, 367
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 1 cut(s) 379
TasI AATT 2 cut(s) 465, 531
TfiI GAWTC 3 cut(s) 108, 335, 416
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 586
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 1 cut(s) 543
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 1 cut(s) 171
TspRI CASTG 1 cut(s) 586
VpaK11BI GGWCC 2 cut(s) 13, 536
VspI ATTAAT 1 cut(s) 96
XagI CCTNNNNNAGG 1 cut(s) 192
XcmI CCANNNNNNNNNTGG 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.