FvH4_6g51920

Surfeit locus protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007923
Physical Location & Seq
Forward (+)
38404854 .. 38407136
2283 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51920.t1

Sequence Viewer

Length: 792 bp
ATGGCGACGAGTGAGGAGAAGACCAAAGAAGGGAACAACCTACTGGGGTCGCCAACCTTCAAGGAGCTCGACAATGGTCGCTTCCAGTGCGTCGAGACTGGGCACCAATTGCTTGCCAAAGACATTGAAACCTACTCTCAGAGCAAACGGTGTCGTTTGGGTCTCATCGAATTCGCACTCTCTCATAATAAACCTCCTCTCAACATGTTCAAGCAGGACCCTCTTTCTCGTTCAAAGTTGGTGTGTAAGCTAACGGAGGATACCATCAATAAGTCGGAGGAACACATTTGGAAGCATATCAATGGGAAACGATTCCTCAACAGACTGGAGGAAATGGAAGAAGGAAAGCTAAATTTAAATAAAATGGAAGAAGAGCTGGATGATCAGGAACCTGAGAAAGCATCTAAGCCTGGCAAAGATGGAGCCAGGAAGGAGAAGAAGGAGAAGAAAAAGAAGAAGAAAAAGGAGGTGAAGGTGGAGGAGGACGGTGATGATGAGATTATCTCTGAAACACCCAAGTCTCATAGTGAGGAAAGTGATTCTGAAGAAGCTGAGTTTTGGATCCCTCCACCAGGAGCACGCTGGGATTTTGATGATGGCGGTGACAGATGGGGATCTGATTCGGAGTCAGAGAGCAATGATGAGAACAAAAGTGATGAGGTTGATGGAATTGTTGAAGATGGTGACGAGGAGTCAGAAGAGATCTCAATGCGGACAAAAAGAATGTCCATAGAAATTGGACCAAGCAGCTTTGCCTCAAGAAAGAAGAAGAGTAAGAAGAACACTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURF2

Protein Analysis

264

Amino Acids

30.04

Weight (kDa)

5.08

Isoelectric Point (pI)

68.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURF2 PF05477 8 - 259 2.9e-58 Surfeit locus protein 2 (SURF2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 102
AciI CCGC 2 cut(s) 600, 712
AclWI GGATC 3 cut(s) 556, 569, 622
AcsI RAATTY 2 cut(s) 170, 352
AcuI CTGAAG 1 cut(s) 564
AfiI CCNNNNNNNGG 2 cut(s) 30, 572
AflIII ACRYGT 1 cut(s) 204
AgsI TTSAA 5 cut(s) 61, 128, 211, 234, 677
AhdI GACNNNNNGTC 1 cut(s) 691
AjnI CCWGG 3 cut(s) 409, 425, 571
AluBI AGCT 6 cut(s) 67, 250, 349, 376, 551, 750
AluI AGCT 6 cut(s) 67, 250, 349, 376, 551, 750
Alw21I GWGCWC 2 cut(s) 69, 580
Alw26I GTCTC 3 cut(s) 89, 167, 525
AlwI GGATC 3 cut(s) 556, 569, 622
ApeKI GCWGC 1 cut(s) 747
ApoI RAATTY 2 cut(s) 170, 352
ArsI GACNNNNNNTTYG 2 cut(s) 710, 742
Asp700I GAANNNNTTC 1 cut(s) 311
AspS9I GGNCC 2 cut(s) 217, 740
AsuHPI GGTGA 4 cut(s) 481, 500, 614, 695
AvaII GGWCC 2 cut(s) 217, 740
BaeGI GKGCMC 1 cut(s) 105
BamHI GGATCC 1 cut(s) 561
BanI GGYRCC 1 cut(s) 102
BanII GRGCYC 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 26
Bbv12I GWGCWC 2 cut(s) 69, 580
BbvI GCAGC 1 cut(s) 759
BccI CCATC 6 cut(s) 272, 413, 590, 603, 659, 674
BciT130I CCWGG 3 cut(s) 411, 427, 573
BciVI GTATCC 1 cut(s) 253
BclI TGATCA 1 cut(s) 382
BcoDI GTCTC 3 cut(s) 89, 167, 525
BfuI GTATCC 1 cut(s) 253
BglII AGATCT 1 cut(s) 702
BisI GCNGC 1 cut(s) 748
BlsI GCNGC 1 cut(s) 749
Bme1390I CCNGG 3 cut(s) 411, 427, 573
Bme18I GGWCC 2 cut(s) 217, 740
BmeRI GACNNNNNGTC 1 cut(s) 691
BmgT120I GGNCC 2 cut(s) 217, 740
BmiI GGNNCC 5 cut(s) 104, 219, 390, 424, 563
BmrFI CCNGG 3 cut(s) 411, 427, 573
BmrI ACTGGG 2 cut(s) 53, 108
BmsI GCATC 1 cut(s) 410
BmuI ACTGGG 2 cut(s) 53, 108
BoxI GACNNNNGTC 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 26
BplI GAGNNNNNCTC 2 cut(s) 488, 520
BpmI CTGGAG 1 cut(s) 347
BpuEI CTTGAG 1 cut(s) 742
BsaBI GATNNNNATC 1 cut(s) 613
BsaI GGTCTC 1 cut(s) 167
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 572
Bse1I ACTGG 4 cut(s) 48, 85, 103, 330
Bse3DI GCAATG 1 cut(s) 643
Bse8I GATNNNNATC 1 cut(s) 613
BseBI CCWGG 3 cut(s) 411, 427, 573
BseGI GGATG 1 cut(s) 385
BseJI GATNNNNATC 1 cut(s) 613
BseLI CCNNNNNNNGG 2 cut(s) 30, 572
BseMI GCAATG 1 cut(s) 643
BseMII CTCAG 3 cut(s) 152, 384, 543
BseNI ACTGG 4 cut(s) 48, 85, 103, 330
BseRI GAGGAG 4 cut(s) 29, 186, 494, 704
BseSI GKGCMC 1 cut(s) 105
BseXI GCAGC 1 cut(s) 759
BseYI CCCAGC 1 cut(s) 582
BshNI GGYRCC 1 cut(s) 102
BsiHKAI GWGCWC 2 cut(s) 69, 580
BslI CCNNNNNNNGG 2 cut(s) 30, 572
BsmAI GTCTC 3 cut(s) 89, 167, 525
Bso31I GGTCTC 1 cut(s) 167
Bsp1286I GDGCHC 3 cut(s) 69, 105, 580
Bsp143I GATC 4 cut(s) 382, 561, 614, 702
BspACI CCGC 2 cut(s) 600, 712
BspCNI CTCAG 3 cut(s) 151, 385, 544
BspLI GGNNCC 5 cut(s) 104, 219, 390, 424, 563
BspPI GGATC 3 cut(s) 556, 569, 622
BspQI GCTCTTC 1 cut(s) 366
BspT107I GGYRCC 1 cut(s) 102
BspTNI GGTCTC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 643
BsrI ACTGG 4 cut(s) 48, 85, 103, 330
BssMI GATC 4 cut(s) 382, 561, 614, 702
Bst2UI CCWGG 3 cut(s) 411, 427, 573
Bst4CI ACNGT 2 cut(s) 150, 488
Bst6I CTCTTC 3 cut(s) 366, 693, 764
BstAPI GCANNNNNTGC 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 114, 580
BstDEI CTNAG 4 cut(s) 138, 393, 405, 552
BstENI CCTNNNNNAGG 1 cut(s) 570
BstF5I GGATG 1 cut(s) 385
BstKTI GATC 4 cut(s) 385, 564, 617, 705
BstMAI GTCTC 3 cut(s) 89, 167, 525
BstMBI GATC 4 cut(s) 382, 561, 614, 702
BstMWI GCNNNNNNNGC 2 cut(s) 87, 109
BstNI CCWGG 3 cut(s) 411, 427, 573
BstNSI RCATGY 1 cut(s) 208
BstPAI GACNNNNGTC 1 cut(s) 75
BstSCI CCNGG 3 cut(s) 409, 425, 571
BstSLI GKGCMC 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 759
BstV2I GAAGAC 1 cut(s) 26
BstX2I RGATCY 3 cut(s) 561, 614, 702
BstYI RGATCY 3 cut(s) 561, 614, 702
BsuI GTATCC 1 cut(s) 253
BtsCI GGATG 1 cut(s) 385
BtsI GCAGTG 1 cut(s) 783
BtsIMutI CAGTG 2 cut(s) 92, 783
Cac8I GCNNGC 2 cut(s) 114, 580
Cfr13I GGNCC 2 cut(s) 217, 740
CseI GACGC 1 cut(s) 79
CviAII CATG 2 cut(s) 205, 789
CviJI RGCY 8 cut(s) 67, 250, 349, 376, 409, 425, 551, 750
CviKI_1 RGCY 8 cut(s) 67, 250, 349, 376, 409, 425, 551, 750
DdeI CTNAG 4 cut(s) 138, 393, 405, 552
DpnI GATC 4 cut(s) 384, 563, 616, 704
DpnII GATC 4 cut(s) 382, 561, 614, 702
DraI TTTAAA 1 cut(s) 357
DriI GACNNNNNGTC 1 cut(s) 691
Eam1104I CTCTTC 3 cut(s) 366, 693, 764
Eam1105I GACNNNNNGTC 1 cut(s) 691
EarI CTCTTC 3 cut(s) 366, 693, 764
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 167
Eco47I GGWCC 2 cut(s) 217, 740
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 564
EcoICRI GAGCTC 1 cut(s) 67
EcoNI CCTNNNNNAGG 1 cut(s) 570
EcoO109I RGGNCCY 1 cut(s) 217
EcoRI GAATTC 1 cut(s) 170
EcoRII CCWGG 3 cut(s) 409, 425, 571
EcoT38I GRGCYC 1 cut(s) 69
FaeI CATG 2 cut(s) 208, 792
FaiI YATR 6 cut(s) 186, 206, 297, 525, 731, 790
FatI CATG 2 cut(s) 204, 788
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 1 cut(s) 748
FokI GGATG 1 cut(s) 392
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 748
GluI GCNGC 1 cut(s) 748
GsaI CCCAGC 1 cut(s) 586
GsuI CTGGAG 1 cut(s) 347
HgaI GACGC 1 cut(s) 79
Hin1II CATG 2 cut(s) 208, 792
HinfI GANTC 5 cut(s) 312, 539, 620, 626, 692
HphI GGTGA 4 cut(s) 481, 500, 614, 695
Hpy188I TCNGA 8 cut(s) 141, 277, 508, 544, 619, 625, 631, 697
Hpy188III TCNNGA 3 cut(s) 94, 386, 759
Hpy99I CGWCG 2 cut(s) 10, 95
HpyAV CCTTC 6 cut(s) 23, 67, 335, 424, 433, 466
HpyCH4III ACNGT 2 cut(s) 150, 488
HpyCH4V TGCA 1 cut(s) 788
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 109
HpyF3I CTNAG 4 cut(s) 138, 393, 405, 552
Hsp92II CATG 2 cut(s) 208, 792
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 4 cut(s) 382, 561, 614, 702
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 3 cut(s) 64, 422, 575
Lsp1109I GCAGC 1 cut(s) 759
LweI GCATC 1 cut(s) 410
MaeIII GTNAC 2 cut(s) 602, 683
MalI GATC 4 cut(s) 384, 563, 616, 704
MboI GATC 4 cut(s) 382, 561, 614, 702
MfeI CAATTG 1 cut(s) 107
MflI RGATCY 3 cut(s) 561, 614, 702
MhlI GDGCHC 3 cut(s) 69, 105, 580
MluCI AATT 5 cut(s) 107, 170, 352, 669, 735
MlyI GAGTC 2 cut(s) 635, 701
MmeI TCCRAC 1 cut(s) 255
MroXI GAANNNNTTC 1 cut(s) 311
MseI TTAA 1 cut(s) 356
MslI CAYNNNNRTG 1 cut(s) 300
MspR9I CCNGG 3 cut(s) 411, 427, 573
MunI CAATTG 1 cut(s) 107
MvaI CCWGG 3 cut(s) 411, 427, 573
MwoI GCNNNNNNNGC 2 cut(s) 87, 109
NdeII GATC 4 cut(s) 382, 561, 614, 702
NlaIII CATG 2 cut(s) 208, 792
NlaIV GGNNCC 5 cut(s) 104, 219, 390, 424, 563
NmuCI GTSAC 2 cut(s) 602, 683
NspI RCATGY 1 cut(s) 208
PciI ACATGT 1 cut(s) 204
PciSI GCTCTTC 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 3 cut(s) 312, 539, 620
PkrI GCNGC 1 cut(s) 749
PleI GAGTC 2 cut(s) 634, 700
PpsI GAGTC 2 cut(s) 634, 700
PpuMI RGGWCCY 1 cut(s) 217
PscI ACATGT 1 cut(s) 204
PshAI GACNNNNGTC 1 cut(s) 75
Psp124BI GAGCTC 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 217
Psp6I CCWGG 3 cut(s) 409, 425, 571
PspFI CCCAGC 1 cut(s) 582
PspGI CCWGG 3 cut(s) 409, 425, 571
PspN4I GGNNCC 5 cut(s) 104, 219, 390, 424, 563
PspPI GGNCC 2 cut(s) 217, 740
PspPPI RGGWCCY 1 cut(s) 217
PsuI RGATCY 3 cut(s) 561, 614, 702
RseI CAYNNNNRTG 1 cut(s) 300
SacI GAGCTC 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 366
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 1 cut(s) 748
Sau3AI GATC 4 cut(s) 382, 561, 614, 702
Sau96I GGNCC 2 cut(s) 217, 740
SchI GAGTC 2 cut(s) 635, 701
ScrFI CCNGG 3 cut(s) 411, 427, 573
SduI GDGCHC 3 cut(s) 69, 105, 580
SfaNI GCATC 1 cut(s) 410
SinI GGWCC 2 cut(s) 217, 740
SmiI ATTTAAAT 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 757
SmoI CTYRAG 1 cut(s) 757
Sse9I AATT 5 cut(s) 107, 170, 352, 669, 735
SsiI CCGC 2 cut(s) 600, 712
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 3 cut(s) 409, 425, 571
SwaI ATTTAAAT 1 cut(s) 357
TaaI ACNGT 2 cut(s) 150, 488
TaqI TCGA 3 cut(s) 69, 93, 168
TasI AATT 5 cut(s) 107, 170, 352, 669, 735
TfiI GAWTC 3 cut(s) 312, 539, 620
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 2 cut(s) 92, 790
TseFI GTSAC 2 cut(s) 602, 683
TseI GCWGC 1 cut(s) 747
Tsp45I GTSAC 2 cut(s) 602, 683
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 2 cut(s) 92, 790
VpaK11BI GGWCC 2 cut(s) 217, 740
XagI CCTNNNNNAGG 1 cut(s) 570
XapI RAATTY 2 cut(s) 170, 352
XceI RCATGY 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 579
XmnI GAANNNNTTC 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.