Rw2G053230

Surfeit locus protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0007923
Physical Location & Seq
Forward (+)
81052154 .. 81055605
3452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G053230.1

Sequence Viewer

Length: 810 bp
ATGGCCACGAGTGAGGAGAAGACCAACAATACTAAAGAAGGAAACAACCTACTGGGCTCGCCGACCTTCAAGGAGCTCGATAATGGTCGCTTCCAGTGCGTCGAGACTGGCCACCAATTACTGGCCAAAGACATTGAATCCTATTCTCAGAGCAAACGGTGCCGTTTGGGTCTCATCGAATTCGCACTCTCTCATAAGAAACCTCCTCTCAACATGTTCAAGCAGGACCCTCTTTCTCGTTCAAAGTTGGTGTGTAAGCTAACCGAGGATACCATCAATAAGTCAGAGGAACACATTTGGAAGCATATTAATGGGAAACGATTCCTCAACAAACTGGAAGAAATGGAAGAACAAAAGTTAACAGTAAATGAAATGGAAGAAGAGCTGGATGATCACAAACCTGATAAAGTATCTAAGCCAGGCAAAGATGGTGCCAGGAAGGAGAAAAAGGAGAAGAAAAAGAAGAAGAAGAAGAAGAAGGAGGAGGCAAAGGAGGAGGATGATGGTGATGATGAGATTATCTCTGAAATACCCAAGTCTCCTAGTGAGGAAAATGATTCTGAAGAAGCTGAGTTCTGGATCCCTCCACCAGGAGCACGTTGGGATTTTGATGATGGCGGTGACAGATGGGGTTCCGATTCAGAGTCAGAGAGCAATGACGAGAACAAAAGTGGCGAGGTTGATGGAATTGTTGAAGATGATGATGAGGAGTCAGAAGAGATCTCAATGCGGACAAAAAGAATGTCCATAGAAATTGGACCAAGCAGCTTTGCTTCCAGAAAGAAGAAGAGTAAAAAGGACACTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURF2

Protein Analysis

269

Amino Acids

30.78

Weight (kDa)

5.09

Isoelectric Point (pI)

66.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURF2 PF05477 12 - 265 2.1e-55 Surfeit locus protein 2 (SURF2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 159, 431
AccB7I CCANNNNNTGG 1 cut(s) 121
AciI CCGC 2 cut(s) 618, 730
AclWI GGATC 2 cut(s) 574, 587
AcoI YGGCCR 3 cut(s) 3, 109, 123
AcsI RAATTY 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 582
AfiI CCNNNNNNNGG 2 cut(s) 121, 590
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 5 cut(s) 70, 137, 220, 243, 695
AjnI CCWGG 3 cut(s) 418, 434, 589
AluBI AGCT 5 cut(s) 76, 259, 385, 569, 768
AluI AGCT 5 cut(s) 76, 259, 385, 569, 768
Alw21I GWGCWC 2 cut(s) 78, 598
Alw26I GTCTC 3 cut(s) 98, 176, 543
AlwI GGATC 2 cut(s) 574, 587
AoxI GGCC 3 cut(s) 3, 109, 123
ApeKI GCWGC 1 cut(s) 765
ApoI RAATTY 1 cut(s) 179
ArsI GACNNNNNNTTYG 2 cut(s) 728, 760
AseI ATTAAT 1 cut(s) 309
Asp700I GAANNNNTTC 1 cut(s) 320
AspS9I GGNCC 2 cut(s) 226, 758
AsuHPI GGTGA 2 cut(s) 518, 632
AvaII GGWCC 2 cut(s) 226, 758
BalI TGGCCA 3 cut(s) 5, 111, 125
BamHI GGATCC 1 cut(s) 579
BanI GGYRCC 2 cut(s) 159, 431
BanII GRGCYC 2 cut(s) 59, 78
BauI CACGAG 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 26
Bbv12I GWGCWC 2 cut(s) 78, 598
BbvI GCAGC 1 cut(s) 777
BccI CCATC 6 cut(s) 281, 422, 497, 608, 621, 677
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 3 cut(s) 420, 436, 591
BciVI GTATCC 1 cut(s) 262
BclI TGATCA 1 cut(s) 391
BcoDI GTCTC 3 cut(s) 98, 176, 543
BfaI CTAG 1 cut(s) 543
BfuI GTATCC 1 cut(s) 262
BglII AGATCT 1 cut(s) 720
BisI GCNGC 1 cut(s) 766
BlsI GCNGC 1 cut(s) 767
Bme1390I CCNGG 3 cut(s) 420, 436, 591
Bme18I GGWCC 2 cut(s) 226, 758
BmgT120I GGNCC 2 cut(s) 226, 758
BmiI GGNNCC 5 cut(s) 161, 228, 433, 581, 634
BmrFI CCNGG 3 cut(s) 420, 436, 591
BmrI ACTGGG 1 cut(s) 62
BmuI ACTGGG 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 26
BplI GAGNNNNNCTC 2 cut(s) 506, 538
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 590
Bse1I ACTGG 5 cut(s) 57, 94, 112, 126, 339
Bse3DI GCAATG 1 cut(s) 661
BseBI CCWGG 3 cut(s) 420, 436, 591
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 2 cut(s) 394, 505
BseLI CCNNNNNNNGG 2 cut(s) 121, 590
BseMI GCAATG 1 cut(s) 661
BseMII CTCAG 2 cut(s) 161, 561
BseNI ACTGG 5 cut(s) 57, 94, 112, 126, 339
BseRI GAGGAG 5 cut(s) 29, 195, 497, 509, 722
BseXI GCAGC 1 cut(s) 777
BshFI GGCC 3 cut(s) 5, 111, 125
BshNI GGYRCC 2 cut(s) 159, 431
BsiHKAI GWGCWC 2 cut(s) 78, 598
BslI CCNNNNNNNGG 2 cut(s) 121, 590
BsmAI GTCTC 3 cut(s) 98, 176, 543
BsnI GGCC 3 cut(s) 5, 111, 125
Bso31I GGTCTC 1 cut(s) 176
Bsp1286I GDGCHC 3 cut(s) 59, 78, 598
Bsp143I GATC 3 cut(s) 391, 579, 720
BspACI CCGC 2 cut(s) 618, 730
BspANI GGCC 3 cut(s) 5, 111, 125
BspCNI CTCAG 2 cut(s) 160, 562
BspLI GGNNCC 5 cut(s) 161, 228, 433, 581, 634
BspPI GGATC 2 cut(s) 574, 587
BspQI GCTCTTC 1 cut(s) 375
BspT107I GGYRCC 2 cut(s) 159, 431
BspTNI GGTCTC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 661
BsrI ACTGG 5 cut(s) 57, 94, 112, 126, 339
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 3 cut(s) 391, 579, 720
BssSI CACGAG 1 cut(s) 7
Bst2BI CACGAG 1 cut(s) 7
Bst2UI CCWGG 3 cut(s) 420, 436, 591
Bst4CI ACNGT 2 cut(s) 159, 364
Bst6I CTCTTC 3 cut(s) 375, 711, 782
BstAPI GCANNNNNTGC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 3 cut(s) 147, 414, 570
BstENI CCTNNNNNAGG 1 cut(s) 588
BstF5I GGATG 2 cut(s) 394, 505
BstKTI GATC 3 cut(s) 394, 582, 723
BstMAI GTCTC 3 cut(s) 98, 176, 543
BstMBI GATC 3 cut(s) 391, 579, 720
BstMWI GCNNNNNNNGC 2 cut(s) 96, 159
BstNI CCWGG 3 cut(s) 420, 436, 591
BstNSI RCATGY 1 cut(s) 217
BstSCI CCNGG 3 cut(s) 418, 434, 589
BstV1I GCAGC 1 cut(s) 777
BstV2I GAAGAC 1 cut(s) 26
BstX2I RGATCY 2 cut(s) 579, 720
BstYI RGATCY 2 cut(s) 579, 720
BsuI GTATCC 1 cut(s) 262
BsuRI GGCC 3 cut(s) 5, 111, 125
BtsCI GGATG 2 cut(s) 394, 505
BtsI GCAGTG 1 cut(s) 801
BtsIMutI CAGTG 2 cut(s) 101, 801
Cac8I GCNNGC 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 226, 758
CseI GACGC 1 cut(s) 88
CviAII CATG 2 cut(s) 214, 807
DdeI CTNAG 3 cut(s) 147, 414, 570
DpnI GATC 3 cut(s) 393, 581, 722
DpnII GATC 3 cut(s) 391, 579, 720
EaeI YGGCCR 3 cut(s) 3, 109, 123
Eam1104I CTCTTC 3 cut(s) 375, 711, 782
EarI CTCTTC 3 cut(s) 375, 711, 782
Ecl136II GAGCTC 1 cut(s) 76
Eco24I GRGCYC 2 cut(s) 59, 78
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 2 cut(s) 226, 758
Eco53kI GAGCTC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 582
EcoICRI GAGCTC 1 cut(s) 76
EcoNI CCTNNNNNAGG 1 cut(s) 588
EcoO109I RGGNCCY 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 179
EcoRII CCWGG 3 cut(s) 418, 434, 589
EcoT38I GRGCYC 2 cut(s) 59, 78
FaeI CATG 2 cut(s) 217, 810
FaiI YATR 5 cut(s) 195, 215, 306, 749, 808
FatI CATG 2 cut(s) 213, 806
FbaI TGATCA 1 cut(s) 391
Fnu4HI GCNGC 1 cut(s) 766
FokI GGATG 2 cut(s) 401, 512
FriOI GRGCYC 2 cut(s) 59, 78
Fsp4HI GCNGC 1 cut(s) 766
FspBI CTAG 1 cut(s) 543
GluI GCNGC 1 cut(s) 766
HaeIII GGCC 3 cut(s) 5, 111, 125
HgaI GACGC 1 cut(s) 88
Hin1II CATG 2 cut(s) 217, 810
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HinfI GANTC 6 cut(s) 137, 321, 557, 638, 644, 710
HpaI GTTAAC 1 cut(s) 360
HphI GGTGA 2 cut(s) 518, 632
Hpy166II GTNNAC 1 cut(s) 360
Hpy188I TCNGA 8 cut(s) 150, 286, 526, 562, 637, 643, 649, 715
Hpy188III TCNNGA 3 cut(s) 103, 577, 777
Hpy8I GTNNAC 1 cut(s) 360
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 4 cut(s) 32, 76, 433, 472
HpyCH4III ACNGT 2 cut(s) 159, 364
HpyCH4IV ACGT 1 cut(s) 598
HpyCH4V TGCA 1 cut(s) 806
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 159
HpyF3I CTNAG 3 cut(s) 147, 414, 570
HpySE526I ACGT 1 cut(s) 598
Hsp92II CATG 2 cut(s) 217, 810
Ksp22I TGATCA 1 cut(s) 391
KspAI GTTAAC 1 cut(s) 360
Kzo9I GATC 3 cut(s) 391, 579, 720
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 2 cut(s) 73, 593
Lsp1109I GCAGC 1 cut(s) 777
MaeI CTAG 1 cut(s) 543
MaeII ACGT 1 cut(s) 598
MaeIII GTNAC 1 cut(s) 620
MalI GATC 3 cut(s) 393, 581, 722
MboI GATC 3 cut(s) 391, 579, 720
MflI RGATCY 2 cut(s) 579, 720
MhlI GDGCHC 3 cut(s) 59, 78, 598
MlsI TGGCCA 3 cut(s) 5, 111, 125
MluCI AATT 4 cut(s) 116, 179, 687, 753
MluNI TGGCCA 3 cut(s) 5, 111, 125
MlyI GAGTC 2 cut(s) 653, 719
Mox20I TGGCCA 3 cut(s) 5, 111, 125
MroXI GAANNNNTTC 1 cut(s) 320
MscI TGGCCA 3 cut(s) 5, 111, 125
MseI TTAA 2 cut(s) 309, 359
MslI CAYNNNNRTG 1 cut(s) 309
Msp20I TGGCCA 3 cut(s) 5, 111, 125
MspR9I CCNGG 3 cut(s) 420, 436, 591
MvaI CCWGG 3 cut(s) 420, 436, 591
MwoI GCNNNNNNNGC 2 cut(s) 96, 159
NdeII GATC 3 cut(s) 391, 579, 720
NlaIII CATG 2 cut(s) 217, 810
NlaIV GGNNCC 5 cut(s) 161, 228, 433, 581, 634
NmuCI GTSAC 1 cut(s) 620
NspI RCATGY 1 cut(s) 217
PciI ACATGT 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 4 cut(s) 137, 321, 557, 638
PflMI CCANNNNNTGG 1 cut(s) 121
PkrI GCNGC 1 cut(s) 767
PleI GAGTC 2 cut(s) 652, 718
PpsI GAGTC 2 cut(s) 652, 718
PpuMI RGGWCCY 1 cut(s) 226
PscI ACATGT 1 cut(s) 213
PshBI ATTAAT 1 cut(s) 309
Psp124BI GAGCTC 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 3 cut(s) 418, 434, 589
PspGI CCWGG 3 cut(s) 418, 434, 589
PspN4I GGNNCC 5 cut(s) 161, 228, 433, 581, 634
PspPI GGNCC 2 cut(s) 226, 758
PspPPI RGGWCCY 1 cut(s) 226
PsuI RGATCY 2 cut(s) 579, 720
RseI CAYNNNNRTG 1 cut(s) 309
SacI GAGCTC 1 cut(s) 78
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 2 cut(s) 309, 359
SatI GCNGC 1 cut(s) 766
Sau3AI GATC 3 cut(s) 391, 579, 720
Sau96I GGNCC 2 cut(s) 226, 758
SchI GAGTC 2 cut(s) 653, 719
ScrFI CCNGG 3 cut(s) 420, 436, 591
SduI GDGCHC 3 cut(s) 59, 78, 598
SinI GGWCC 2 cut(s) 226, 758
SmiMI CAYNNNNRTG 1 cut(s) 309
Sse9I AATT 4 cut(s) 116, 179, 687, 753
SsiI CCGC 2 cut(s) 618, 730
SspMI CTAG 1 cut(s) 543
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 3 cut(s) 418, 434, 589
TaaI ACNGT 2 cut(s) 159, 364
TaiI ACGT 1 cut(s) 601
TaqI TCGA 3 cut(s) 78, 102, 177
TasI AATT 4 cut(s) 116, 179, 687, 753
TfiI GAWTC 4 cut(s) 137, 321, 557, 638
Tru1I TTAA 2 cut(s) 309, 359
Tru9I TTAA 2 cut(s) 309, 359
TscAI CASTG 2 cut(s) 101, 808
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 1 cut(s) 765
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 1 cut(s) 384
TspRI CASTG 2 cut(s) 101, 808
Van91I CCANNNNNTGG 1 cut(s) 121
VpaK11BI GGWCC 2 cut(s) 226, 758
VspI ATTAAT 1 cut(s) 309
XagI CCTNNNNNAGG 1 cut(s) 588
XapI RAATTY 1 cut(s) 179
XceI RCATGY 1 cut(s) 217
XcmI CCANNNNNNNNNTGG 1 cut(s) 597
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.